[med-svn] [python-cogent] annotated tag upstream/1.9 created (now c339b96)

[Andreas Tille]

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tille pushed a change to annotated tag upstream/1.9
in repository python-cogent.

        at  c339b96   (tag)
   tagging  7e5a3a61e6d00e0c4878c8c515fe3a4c790880a0 (commit)
 tagged by  Andreas Tille
        on  Fri Jun 16 10:44:48 2017 +0200

- Log -----------------------------------------------------------------
Upstream version 1.9

Andreas Tille (53):
      Applied changes of NMU
      Commit current state of packaging
      Clarified license of two remaining non-free files and moved package to main; use python-support instead of python-central
      Build ocumentation as html, use short dh rules file instead of cdbs to simplify moving around the docs; uploaded to main instead of non-free
      Move to dh_python2 and thus remove Python 2.5 dependency, debhelper 8
      Citation of the day
      Fix Vcs fields globally in all remaining packages because I'm bored by warnings in logfiles when investigating machine readable files of not yet uploaded packages
      Add -f option to rm statements to not fail if files to be remove do not exist
      cme fix dpkg-control; Priority: optional (except for *-dbg)
      DEP5
      Adapted to Github to make sure we will notice new releases
      DEP3
      README.source removed since redundant
      Refreshed patches
      Start working on the test suite
      Keep on working with the unit test
      Try running the test suite but several issues, patches deactivated for the moment
      cme fix dpkg-control
      Adapt to the naming scheme of cd-hit inside Debian
      Switch from python-support to pybuild
      Upload to unstable
      * Build-Depends: bwa [any-amd64] and exclude bwa tests for other
      Some polishing and upload to unstable
      Also deal with infernal that only exists on [any-amd64 any-i386]
      I now checked whether Build-Depends are available on all architectures ... hopefully correct now
      Ignore a few test failures on certain architectures to at least document the problem debian/README.source was created
      Hopefully last try of this series - if some arch might remain in failing I'll consider removing this arch
      Last attempt to burn autobuilders cpu cycles by excluding randomly failing tests :-(
      mothur does not exist on s390x
      exclude test failed on i386 also on kfreebsd-i386
      Fix watch file, new upstream version
      Fix homepage, cme fix dpkg-control
      revert cd-hit name change in Debian
      hardening=+bindnow, Build-Depends: cdbfasta
      Refresh patch
      Exclude some cd-hit tests since python-cogent requires an old version of cd-hit (see issue #101)
      Do real testing after lost testcases are excluded
      Drop unused patches
      Upload to unstable
      Properly test fasttree
      Exclude some tests on some architectures
      Try to support rdp_classifier (but failed - no idea why)
      Upload to unstable
      (Build-)Depends python-matplotlib, Some more tests for certain architectures excluded
      Need to exclude further tests on armhf and mips
      Update d/README.Debian with todo list
      Debhelper 10
      d/watch: version=4
      Skip some tests that do not run reproducibly at build time
      * Skip more tests to enable build on mips & mips64el
      Skip another test to enable build on mips
      Skip test with incompatibilities to Numpy 1.12.0~b1
      New upstream version 1.9

James McCoy (1):
      Move debian/upstream to debian/upstream/metadata

Nadiya Sitdykov (1):
      add autopkgtest test-suite (without tests known to fail)

Steffen Moeller (12):
      Initial attempt to package pycogent.
      Series of updates towards lintian-cleanliness
      Fixed debian/watch
      :) corrected for wrong location of source folder
      Series of updates.
      PyCogent is now fully functional from what I observe.
      Cleanup and rename.
      Improving build dependencies.
      Correcting for group management.
      Uploaded new version after confirmation by upstream that redistribution is ok - it has to go to non-free because of a limit to academia
      Update to 1.5.1 of python-cogent
      Updated to 1.5.1-2

Thorsten Alteholz (1):
      new upstream version

Tim Booth (2):
      New upstream, and I needed the new python-cogent to support the latest QIIME
      Patches to get cogent working with newer cd-hit and parsinsert

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