[med-svn] [libseqlib] 02/03: Explicitly add -I/usr/include

[Andreas Tille]

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tille pushed a commit to branch master
in repository libseqlib.

commit 36f17da62698af4dc7f25eb183c383bc78b7c9b1
Author: Andreas Tille <tille at debian.org>
Date:   Sun Jun 18 10:20:03 2017 +0200

    Explicitly add -I/usr/include
---
 debian/changelog                                 | 1 +
 debian/patches/dynamic_lib.patch                 | 2 +-
 debian/patches/use_debian_packaged_jsoncpp.patch | 4 ++--
 debian/patches/use_debian_packaged_ssw.patch     | 2 +-
 4 files changed, 5 insertions(+), 4 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index 7dc6eff..7ad7d68 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,6 +1,7 @@
 libseqlib (1.1.1+dfsg-2) UNRELEASED; urgency=medium
 
   * Build-Depends: liblzma-dev
+  * Explicitly add -I/usr/include
 
  -- Andreas Tille <tille at debian.org>  Sat, 17 Jun 2017 23:57:50 +0200
 
diff --git a/debian/patches/dynamic_lib.patch b/debian/patches/dynamic_lib.patch
index e3f5205..0917c5c 100644
--- a/debian/patches/dynamic_lib.patch
+++ b/debian/patches/dynamic_lib.patch
@@ -9,7 +9,7 @@ Description: Create dynamic library
 +lib_LTLIBRARIES  = libseqlib.la
  
 -libseqlib_a_CPPFLAGS = -I../ -I../htslib -I/usr/include/fml -Wno-sign-compare
-+libseqlib_la_CPPFLAGS = `pkg-config --cflags htslib` -I/usr/include/fml -Wno-sign-compare
++libseqlib_la_CPPFLAGS = -I/usr/include `pkg-config --cflags htslib` -I/usr/include/fml -Wno-sign-compare
  
 -libseqlib_a_SOURCES =   FastqReader.cpp BFC.cpp ReadFilter.cpp SeqPlot.cpp jsoncpp.cpp ssw_cpp.cpp ssw.c \
 +libseqlib_la_SOURCES =   FastqReader.cpp BFC.cpp ReadFilter.cpp SeqPlot.cpp jsoncpp.cpp ssw_cpp.cpp ssw.c \
diff --git a/debian/patches/use_debian_packaged_jsoncpp.patch b/debian/patches/use_debian_packaged_jsoncpp.patch
index 9433063..f9ef394 100644
--- a/debian/patches/use_debian_packaged_jsoncpp.patch
+++ b/debian/patches/use_debian_packaged_jsoncpp.patch
@@ -7,8 +7,8 @@ Description: Do not use code copy of jsoncpp
 @@ -1,8 +1,8 @@
  lib_LTLIBRARIES  = libseqlib.la
  
--libseqlib_la_CPPFLAGS = `pkg-config --cflags htslib` -I/usr/include/fml -Wno-sign-compare
-+libseqlib_la_CPPFLAGS = `pkg-config --cflags htslib` -I/usr/include/fml `pkg-config --cflags jsoncpp` -Wno-sign-compare
+-libseqlib_la_CPPFLAGS = -I/usr/include `pkg-config --cflags htslib` -I/usr/include/fml -Wno-sign-compare
++libseqlib_la_CPPFLAGS = -I/usr/include `pkg-config --cflags htslib` -I/usr/include/fml `pkg-config --cflags jsoncpp` -Wno-sign-compare
  
 -libseqlib_la_SOURCES =   FastqReader.cpp BFC.cpp ReadFilter.cpp SeqPlot.cpp jsoncpp.cpp ssw_cpp.cpp ssw.c \
 +libseqlib_la_SOURCES =   FastqReader.cpp BFC.cpp ReadFilter.cpp SeqPlot.cpp ssw_cpp.cpp ssw.c \
diff --git a/debian/patches/use_debian_packaged_ssw.patch b/debian/patches/use_debian_packaged_ssw.patch
index d67b079..3912174 100644
--- a/debian/patches/use_debian_packaged_ssw.patch
+++ b/debian/patches/use_debian_packaged_ssw.patch
@@ -14,7 +14,7 @@ Description: Do not use code copy of libssw
 +++ b/src/Makefile.am
 @@ -2,7 +2,7 @@ lib_LTLIBRARIES  = libseqlib.la
  
- libseqlib_la_CPPFLAGS = `pkg-config --cflags htslib` -I/usr/include/fml `pkg-config --cflags jsoncpp` -Wno-sign-compare
+ libseqlib_la_CPPFLAGS = -I/usr/include `pkg-config --cflags htslib` -I/usr/include/fml `pkg-config --cflags jsoncpp` -Wno-sign-compare
  
 -libseqlib_la_SOURCES =   FastqReader.cpp BFC.cpp ReadFilter.cpp SeqPlot.cpp ssw_cpp.cpp ssw.c \
 +libseqlib_la_SOURCES =   FastqReader.cpp BFC.cpp ReadFilter.cpp SeqPlot.cpp \

-- 
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