[med-svn] [maffilter] 03/08: Merge tag 'upstream/1.2.1'

[Andreas Tille]

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tille pushed a commit to branch master
in repository maffilter.

commit 115992b3affa28130c9444c72cb654a510755692
Merge: e281e4f 9a5e284
Author: Andreas Tille <tille at debian.org>
Date:   Thu Jun 22 08:54:18 2017 +0200

    Merge tag 'upstream/1.2.1'
    
    Upstream version 1.2.1

 AUTHORS.txt => AUTHORS                             |   0
 CMakeLists.txt                                     | 277 +++-----
 COPYING.txt                                        | 506 ---------------
 ChangeLog                                          |  44 +-
 INSTALL.txt => INSTALL                             |   2 +-
 LICENSE                                            | 674 ++++++++++++++++++++
 MafFilter/CMakeLists.txt                           |  23 +-
 MafFilter/MafFilter.cpp                            | 605 ++++++++++++++++--
 MafFilter/SystemCallMafIterator.cpp                |  84 +++
 MafFilter/SystemCallMafIterator.h                  | 110 ++++
 MafFilter/TreeBuildingSystemCallMafIterator.cpp    |  82 +++
 MafFilter/TreeBuildingSystemCallMafIterator.h      | 115 ++++
 buildBin.sh                                        |   7 +
 doc/CMakeLists.txt                                 |  80 ++-
 doc/maffilter.texi                                 | 695 +++++++++++++++++----
 ...projected.chr22.subset.nogap.cleaned_aln.maf.gz | Bin 0 -> 13206362 bytes
 examples/UCSC46ways/MafFilter.bpp                  |   2 +-
 examples/UCSC46ways/README                         |   1 +
 ...Mgraminicolav2.FrozenGeneCatalog20080910.gff.gz | Bin 0 -> 809905 bytes
 examples/Ztritici/tba_refIPO323.maf.gz             | Bin 0 -> 60513136 bytes
 maffilter.spec                                     |  66 +-
 man/CMakeLists.txt                                 |  47 +-
 man/{maffilter.1.txt => maffilter.1}               |   2 +-
 23 files changed, 2470 insertions(+), 952 deletions(-)

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