[med-svn] [bio-tradis] branch master updated (862c8c6 -> 73b61ed)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch master
in repository bio-tradis.

      from  862c8c6   Manually enhanced manpages
       new  456d70e   Upload to new
       new  cfe3f7b   ftpmaster considers this GPL-3 rather than GPL-3+
       new  179704f   Package is Architecture: all
       new  844a577   New upstream version 1.3.3+dfsg
       new  941391b   Merge tag 'upstream/1.3.3+dfsg'
       new  9da8c6e   New upstream version
       new  c3e16e5   Standards-Version: 4.0.0 (no changes needed)
       new  73b61ed   Upload to unstable

The 8 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 README.md                                    | 47 +++++++++++++++-------------
 bin/tradis_essentiality.R                    | 24 +++++++-------
 debian/changelog                             | 19 +++++++++--
 debian/control                               |  4 +--
 debian/copyright                             |  9 +++---
 dist.ini                                     |  2 +-
 lib/Bio/Tradis/AddTagsToSeq.pm               | 13 +++++---
 lib/Bio/Tradis/CombinePlots.pm               |  5 +--
 lib/Bio/Tradis/CommandLine/TradisAnalysis.pm |  6 ++--
 lib/Bio/Tradis/CommandLine/TradisBam.pm      | 15 +++++----
 t/Bio/Tradis/AddTagsToSeq.t                  | 21 +++++++------
 t/Bio/Tradis/CombinePlots.t                  | 32 +++++++++----------
 t/Bio/Tradis/CommandLine/TradisAnalysis.t    |  1 -
 t/Bio/Tradis/FilterTags.t                    | 26 +++++++--------
 t/Bio/Tradis/Map.t                           |  8 ++---
 t/Bio/Tradis/Parser/Bam.t                    |  1 -
 t/Bio/Tradis/Parser/Cigar.t                  |  1 -
 t/Bio/Tradis/Parser/Fastq.t                  |  2 --
 t/Bio/Tradis/RemoveTags.t                    | 20 ++++++------
 t/Bio/Tradis/RunTradis.t                     | 45 +++++++++++++-------------
 t/Bio/Tradis/TradisPlot.t                    |  9 ++++--
 21 files changed, 168 insertions(+), 142 deletions(-)

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