[med-svn] [bio-tradis] 05/08: Merge tag 'upstream/1.3.3+dfsg'

[Andreas Tille]

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tille pushed a commit to branch master
in repository bio-tradis.

commit 941391b2f4a1ba85aaf76271fce670df36b3a6ed
Merge: 179704f 844a577
Author: Andreas Tille <tille at debian.org>
Date:   Thu Jun 22 15:54:39 2017 +0200

    Merge tag 'upstream/1.3.3+dfsg'
    
    Upstream version 1.3.3+dfsg

 README.md                                    | 47 +++++++++++++++-------------
 bin/tradis_essentiality.R                    | 24 +++++++-------
 dist.ini                                     |  2 +-
 lib/Bio/Tradis/AddTagsToSeq.pm               | 13 +++++---
 lib/Bio/Tradis/CombinePlots.pm               |  5 +--
 lib/Bio/Tradis/CommandLine/TradisAnalysis.pm |  6 ++--
 lib/Bio/Tradis/CommandLine/TradisBam.pm      | 15 +++++----
 t/Bio/Tradis/AddTagsToSeq.t                  | 21 +++++++------
 t/Bio/Tradis/CombinePlots.t                  | 32 +++++++++----------
 t/Bio/Tradis/CommandLine/TradisAnalysis.t    |  1 -
 t/Bio/Tradis/FilterTags.t                    | 26 +++++++--------
 t/Bio/Tradis/Map.t                           |  8 ++---
 t/Bio/Tradis/Parser/Bam.t                    |  1 -
 t/Bio/Tradis/Parser/Cigar.t                  |  1 -
 t/Bio/Tradis/Parser/Fastq.t                  |  2 --
 t/Bio/Tradis/RemoveTags.t                    | 20 ++++++------
 t/Bio/Tradis/RunTradis.t                     | 45 +++++++++++++-------------
 t/Bio/Tradis/TradisPlot.t                    |  9 ++++--
 18 files changed, 146 insertions(+), 132 deletions(-)

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