[med-svn] [bio-tradis] branch upstream updated (0363438 -> 844a577)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch upstream
in repository bio-tradis.

      from  0363438   New upstream version 1.3.1+dfsg
       new  844a577   New upstream version 1.3.3+dfsg

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 README.md                                    | 47 +++++++++++++++-------------
 bin/tradis_essentiality.R                    | 24 +++++++-------
 dist.ini                                     |  2 +-
 lib/Bio/Tradis/AddTagsToSeq.pm               | 13 +++++---
 lib/Bio/Tradis/CombinePlots.pm               |  5 +--
 lib/Bio/Tradis/CommandLine/TradisAnalysis.pm |  6 ++--
 lib/Bio/Tradis/CommandLine/TradisBam.pm      | 15 +++++----
 t/Bio/Tradis/AddTagsToSeq.t                  | 21 +++++++------
 t/Bio/Tradis/CombinePlots.t                  | 32 +++++++++----------
 t/Bio/Tradis/CommandLine/TradisAnalysis.t    |  1 -
 t/Bio/Tradis/FilterTags.t                    | 26 +++++++--------
 t/Bio/Tradis/Map.t                           |  8 ++---
 t/Bio/Tradis/Parser/Bam.t                    |  1 -
 t/Bio/Tradis/Parser/Cigar.t                  |  1 -
 t/Bio/Tradis/Parser/Fastq.t                  |  2 --
 t/Bio/Tradis/RemoveTags.t                    | 20 ++++++------
 t/Bio/Tradis/RunTradis.t                     | 45 +++++++++++++-------------
 t/Bio/Tradis/TradisPlot.t                    |  9 ++++--
 18 files changed, 146 insertions(+), 132 deletions(-)

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