[med-svn] [circlator] branch master updated (92736a6 -> 90dbc22)
Sascha Steinbiss
satta at debian.org
Fri Jun 23 10:15:16 UTC 2017
This is an automated email from the git hooks/post-receive script.
satta pushed a change to branch master
in repository circlator.
from 92736a6 new upstream release
new e6369ca New upstream version 1.5.1
new db03f09 Merge tag 'upstream/1.5.1'
new e25e6d8 new upstream release
new 90dbc22 support Canu as alternative assembler
The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
AUTHORS | 2 +
circlator/assemble.py | 69 +++++++++++++++--
circlator/assembly.py | 90 +++++++++++++++-------
circlator/bamfilter.py | 32 +++++++-
circlator/common.py | 3 +
circlator/external_progs.py | 17 +++-
circlator/merge.py | 25 ++++--
circlator/tasks/all.py | 17 +++-
circlator/tasks/assemble.py | 6 +-
circlator/tasks/bam2reads.py | 2 +
circlator/tasks/merge.py | 8 ++
circlator/tests/assemble_test.py | 33 ++++++++
circlator/tests/assembly_test.py | 30 +++++---
.../assemble_test_rename_canu_contigs.expect.fa | 8 ++
.../data/assemble_test_rename_canu_contigs.in.fa | 8 ++
.../assembly_test_circular_contigs_from_canu.gfa | 14 ++++
circlator/versions.py | 4 +-
debian/changelog | 9 +++
debian/control | 4 +-
install_dependencies.sh | 10 +++
setup.py | 4 +-
21 files changed, 326 insertions(+), 69 deletions(-)
create mode 100644 circlator/tests/data/assemble_test_rename_canu_contigs.expect.fa
create mode 100644 circlator/tests/data/assemble_test_rename_canu_contigs.in.fa
create mode 100644 circlator/tests/data/assembly_test_circular_contigs_from_canu.gfa
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