[med-svn] [ariba] branch master updated (20ef99a -> d4a96be)

[Sascha Steinbiss]

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satta pushed a change to branch master
in repository ariba.

      from  20ef99a   upload to unstable
       new  5fd2631   New upstream version 2.10.0+ds
       new  6c17042   Merge tag 'upstream/2.10.0+ds'
       new  d4a96be   new upstream release

The 3 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 ariba/__init__.py                                  |  1 +
 ariba/flag.py                                      |  3 ++
 ariba/mic_plotter.py                               |  2 +-
 ariba/ref_preparer.py                              |  8 ++++-
 ariba/reference_data.py                            | 19 +++++++----
 ariba/report_filter.py                             |  3 ++
 ariba/report_flag_expander.py                      | 37 ++++++++++++++++++++++
 ariba/tasks/__init__.py                            |  1 +
 ariba/tasks/expandflag.py                          |  8 +++++
 .../01.filter.check_genes.log                      | 10 +++---
 .../data/reference_data_test_remove_bad_genes.log  | 10 +++---
 ariba/tests/data/report_flag_expander.run.in.tsv   |  3 ++
 ariba/tests/data/report_flag_expander.run.out.tsv  |  3 ++
 ariba/tests/flag_test.py                           |  8 +++++
 ariba/tests/reference_data_test.py                 | 17 ++++++----
 ariba/tests/report_filter_test.py                  | 15 +++++++++
 ariba/tests/report_flag_expander_test.py           | 20 ++++++++++++
 debian/changelog                                   |  6 ++++
 scripts/ariba                                      | 12 +++++++
 setup.py                                           |  2 +-
 20 files changed, 163 insertions(+), 25 deletions(-)
 create mode 100644 ariba/report_flag_expander.py
 create mode 100644 ariba/tasks/expandflag.py
 create mode 100644 ariba/tests/data/report_flag_expander.run.in.tsv
 create mode 100644 ariba/tests/data/report_flag_expander.run.out.tsv
 create mode 100644 ariba/tests/report_flag_expander_test.py

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