[med-svn] [phyml] annotated tag debian/3%3.3.20170530+dfsg-2 created (now 15d4ef9)
Graham Inggs
ginggs at moszumanska.debian.org
Fri Jun 30 12:37:27 UTC 2017
This is an automated email from the git hooks/post-receive script.
ginggs pushed a change to annotated tag debian/3%3.3.20170530+dfsg-2
in repository phyml.
at 15d4ef9 (tag)
tagging fa87036ac864eee51dce34816862d7f2efa4dfeb (commit)
replaces upstream/3.3.20170530+dfsg
tagged by Graham Inggs
on Fri Jun 30 14:05:24 2017 +0200
- Log -----------------------------------------------------------------
Debian release 3:3.3.20170530+dfsg-2
Andreas Tille (64):
Merge tag 'upstream/20120412'
Re-add debian/ dir
Merge tag 'upstream/20141029+dfsg'
enable building using libhmsbeagle
Move to Git
Remove more unneeded files once we are at it
Update patches
Adapt to upstream tarball changes
Using libhmsbeagle changes binary name - so we need to work around this name change
Fix install procedure
Do not uselessly link against libstdc++
Info about the versioning from upstream
DEP5
Names will be used above the changes usually, spelling in README.Debian
Enable MPI version of phyml
DEP3 header
Mention paralellised version
Upload to unstable
Wrapper script to call mpi version with same name if the machine has more than one processor
Fix changelog entry
Add missing Depends: openmpi-bin
Use compression options in d/watch
Merge tag 'upstream/3.2.20160530+dfsg'
New upstream version
Fix Vcs-Git
Fix missing declaration
Avoid initialisation an array with a scalar value
Imported Upstream version 3.2.0+dfsg
Adapt patched to previous version
hardening=+all,-pie (Build fails with +pie)
Wrapper to use MPI if appropriate
Upload to unstable
Add pocl-opencl-icd to autopkgtest dependencies to emulate CPU-based ICD
debhelper 10
d/watch: version=4
Use chrpath to remove RPATH from binary
Use "OMPI_MCA_plm_rsh_agent=/bin/false" in test, upload to unstable
Fix wrapper to correctly use mpirun
Close bug + upload to unstable
Also provide version without beagle library since it causes trouble on machines without according graphics hardware
Provide link /usr/bin/phyml-beagle
Enable to switch of MPI version via environment variable since there are circumstances when it leads to wrong results
Close bugs
Add manpage
Make sure we can do multiprocessing at all before attempting to use it
Test single processor and MPI in autopkgtest
Fix manpage link
Upload to unstable
Fix bug in wrapper script
Add todo for past-Stretch release
New upstream version
Introduce phyml-beagle package
Updated version 3.3.20170530+dfsg from 'upstream/3.3.20170530+dfsg'
Refresh patches
Fix gcc-7 issue
Fix all instances
Some fixes to build with BEAGLE
Normalise patches
Remove patch that was merged into other file
Upstream confirmed that beagle is not supported
Standards-Version: 4.0.0 (no changes needed)
Do not disable PIE
Do not build phytime since it is not supported any more
Upload to unstable
Canberk Koç (1):
Autopkgtest fixed
Graham Inggs (3):
Do not emit -march=native
Drop autopkgtest dependency on pocl-opencl-icd
Prepare for upload to unstable
Kevin Murray (15):
Fix watch link to github archives
Merge tag 'upstream/3.2.0+dfsg'
New version in d/ch
Add myself to uploaders
Fix typo in README.debian
target unstable
Build missing symbols by adding -DPHYREX to CFLAGS
Nuke out of date upstream metadata
Use secure vcs-git
Merge releases, document CPPFLAGS hack
Fix VCS link
New release in d/ch
Add patch to use debian version not date
Fix no-configure-ac-date patch syntax error
Bump standards-version
cbk-guest (1):
autopkgtest added
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