[med-svn] [eagle] branch master updated (9d1f5e6 -> cc0cf0e)

[Dylan Aïssi]

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bob.dybian-guest pushed a change to branch master
in repository eagle.

      from  9d1f5e6   Remove the test which creates a false positive in the autopkgtest by emitting some warnings. (Closes: #842356)
       new  e12c01b   Imported Upstream version 2.3.1
       new  cc0cf0e   Merge tag 'upstream/2.3.1'

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Summary of changes:
 example/example.log          |  70 ++++++++++++++++++++---------------------
 example/example_ref.log      |  21 +++++++------
 example/example_vcf.log      |  72 +++++++++++++++++++++----------------------
 example/phased.vcf.gz        | Bin 200389 -> 200385 bytes
 example/target.phased.vcf.gz | Bin 21049 -> 21050 bytes
 src/Eagle.cpp                |   8 +++++
 src/Eagle.hpp                |   4 +--
 src/EagleImpMiss.cpp         |   1 +
 src/EagleMain.cpp            |  16 +++++-----
 src/EaglePBWT.cpp            |  11 ++++---
 src/EagleParams.cpp          |  16 +++++++---
 src/FileUtils.cpp            |   4 +--
 src/GenoData.cpp             |   6 +++-
 src/HapHedge.cpp             |   2 +-
 src/MapInterpolater.cpp      |   8 ++++-
 src/SyncedVcfData.cpp        |  44 +++++++++++++++++++-------
 src/Version.hpp              |   4 +--
 17 files changed, 170 insertions(+), 117 deletions(-)

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