[med-svn] [eagle] 02/02: Merge tag 'upstream/2.3.1'

[Dylan Aïssi]

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bob.dybian-guest pushed a commit to branch master
in repository eagle.

commit cc0cf0e4d30f25267b3f825478037f60b16e1429
Merge: 9d1f5e6 e12c01b
Author: Dylan Aïssi <bob.dybian at gmail.com>
Date:   Sun Mar 5 22:40:35 2017 +0100

    Merge tag 'upstream/2.3.1'
    
    Upstream version 2.3.1

 example/example.log          |  70 ++++++++++++++++++++---------------------
 example/example_ref.log      |  21 +++++++------
 example/example_vcf.log      |  72 +++++++++++++++++++++----------------------
 example/phased.vcf.gz        | Bin 200389 -> 200385 bytes
 example/target.phased.vcf.gz | Bin 21049 -> 21050 bytes
 src/Eagle.cpp                |   8 +++++
 src/Eagle.hpp                |   4 +--
 src/EagleImpMiss.cpp         |   1 +
 src/EagleMain.cpp            |  16 +++++-----
 src/EaglePBWT.cpp            |  11 ++++---
 src/EagleParams.cpp          |  16 +++++++---
 src/FileUtils.cpp            |   4 +--
 src/GenoData.cpp             |   6 +++-
 src/HapHedge.cpp             |   2 +-
 src/MapInterpolater.cpp      |   8 ++++-
 src/SyncedVcfData.cpp        |  44 +++++++++++++++++++-------
 src/Version.hpp              |   4 +--
 17 files changed, 170 insertions(+), 117 deletions(-)

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