[med-svn] [eagle] branch upstream updated (8715418 -> e12c01b)

[Dylan Aïssi]

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bob.dybian-guest pushed a change to branch upstream
in repository eagle.

      from  8715418   Imported Upstream version 2.3
       new  e12c01b   Imported Upstream version 2.3.1

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
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Summary of changes:
 example/example.log          |  70 ++++++++++++++++++++---------------------
 example/example_ref.log      |  21 +++++++------
 example/example_vcf.log      |  72 +++++++++++++++++++++----------------------
 example/phased.vcf.gz        | Bin 200389 -> 200385 bytes
 example/target.phased.vcf.gz | Bin 21049 -> 21050 bytes
 src/Eagle.cpp                |   8 +++++
 src/Eagle.hpp                |   4 +--
 src/EagleImpMiss.cpp         |   1 +
 src/EagleMain.cpp            |  16 +++++-----
 src/EaglePBWT.cpp            |  11 ++++---
 src/EagleParams.cpp          |  16 +++++++---
 src/FileUtils.cpp            |   4 +--
 src/GenoData.cpp             |   6 +++-
 src/HapHedge.cpp             |   2 +-
 src/MapInterpolater.cpp      |   8 ++++-
 src/SyncedVcfData.cpp        |  44 +++++++++++++++++++-------
 src/Version.hpp              |   4 +--
 17 files changed, 170 insertions(+), 117 deletions(-)

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