[med-svn] [paleomix] branch master updated (64e1fa3 -> b96def7)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch master
in repository paleomix.

      from  64e1fa3   Add autopkgtest
       new  3ec2633   Somehow also test bwa - not finished
       new  843ac8d   Add ITP number
       new  977e063   Add lintian overrides for false positives
       new  1e49ab9   Manpages
       new  13c0a6e   Manual edits of auto generated manpages
       new  c37dcdc   Fix lintian overrides
       new  0cae395   Upload to instable
       new  b96def7   Add missing license statement

The 8 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 debian/changelog                   |   6 +-
 debian/copyright                   |  16 +++++
 debian/createmanpages              |  52 ++++++++++++++
 debian/lintian-overrides           |   4 ++
 debian/manpages                    |   1 +
 debian/mans/bam_pipeline.1         |  49 +++++++++++++
 debian/mans/bam_rmdup_collapsed.1  |  44 ++++++++++++
 debian/mans/conv_gtf_to_bed.1      |  59 ++++++++++++++++
 debian/mans/paleomix.1             |  90 +++++++++++++++++++++++
 debian/mans/phylo_pipeline.1       | 141 +++++++++++++++++++++++++++++++++++++
 debian/mans/trim_pipeline.1        |  49 +++++++++++++
 {tests => debian/tests}/bwa/run.sh |  80 +++------------------
 12 files changed, 516 insertions(+), 75 deletions(-)
 create mode 100755 debian/createmanpages
 create mode 100644 debian/lintian-overrides
 create mode 100644 debian/manpages
 create mode 100644 debian/mans/bam_pipeline.1
 create mode 100644 debian/mans/bam_rmdup_collapsed.1
 create mode 100644 debian/mans/conv_gtf_to_bed.1
 create mode 100644 debian/mans/paleomix.1
 create mode 100644 debian/mans/phylo_pipeline.1
 create mode 100644 debian/mans/trim_pipeline.1
 copy {tests => debian/tests}/bwa/run.sh (61%)

-- 
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