[med-svn] [roguenarok] 02/02: Initial packaging
Andreas Tille
tille at debian.org
Mon Mar 13 10:48:38 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository roguenarok.
commit a032295efc004594f893eef388fce104c5b35a01
Author: Andreas Tille <tille at debian.org>
Date: Mon Mar 13 11:48:00 2017 +0100
Initial packaging
---
debian/changelog | 5 +++++
debian/clean | 1 +
debian/compat | 1 +
debian/control | 19 +++++++++++++++++++
debian/copyright | 26 ++++++++++++++++++++++++++
debian/install | 5 +++++
debian/rules | 15 +++++++++++++++
debian/source/format | 1 +
debian/upstream/metadata | 12 ++++++++++++
debian/watch | 3 +++
10 files changed, 88 insertions(+)
diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..3966f90
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+roguenarok (1.0-1) UNRELEASED; urgency=medium
+
+ * Initial release (Closes: #<bug>)
+
+ -- Andreas Tille <tille at debian.org> Mon, 13 Mar 2017 11:13:16 +0100
diff --git a/debian/clean b/debian/clean
new file mode 100644
index 0000000..afd9e16
--- /dev/null
+++ b/debian/clean
@@ -0,0 +1 @@
+roguenarok-*
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..f599e28
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+10
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..edaaeff
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,19 @@
+Source: roguenarok
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: science
+Priority: optional
+Build-Depends: debhelper (>= 10)
+Standards-Version: 3.9.8
+Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/roguenarok.git
+Vcs-Git: https://anonscm.debian.org/git/debian-med/roguenarok.git
+Homepage: https://github.com/aberer/RogueNaRok
+
+Package: roguenarok
+Architecture: any
+Depends: ${shlibs:Depends},
+ ${misc:Depends}
+Description: versatile and scalable algorithm for rogue taxon identification
+ RogueNaRok is a versatile and scalable algorithm for rogue taxon
+ identification. Also includes implementations of the maximum agreement
+ subtree, leaf stability index and taxonomic instability index
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..95e6fe6
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,26 @@
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: RogueNaRok
+Upstream-Contact: Andre J. Aberer <andre.aberer at googlemail.com>
+Source: https://github.com/aberer/RogueNaRok/releases
+
+Files: *
+Copyright: 2011 Andre J. Aberer <andre.aberer at googlemail.com>
+License: GPL-2+
+
+Files: debian/*
+Copyright: 2017 Andreas Tille <tille at debian.org>
+License: GPL-2+
+
+License: GPL-2+
+ This program is free software; you may redistribute it and/or
+ modify its under the terms of the GNU General Public License as
+ published by the Free Software Foundation; either version 2 of the
+ License, or (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+ General Public License for more details.
+ .
+ On Debian systems you can find a copy of the GNU General Public
+ License version 2 at /usr/share/common-licenses/GPL-2.
diff --git a/debian/install b/debian/install
new file mode 100644
index 0000000..df723f4
--- /dev/null
+++ b/debian/install
@@ -0,0 +1,5 @@
+roguenarok-* usr/bin
+rnr-lsi usr/bin
+rnr-mast usr/bin
+rnr-prune usr/bin
+rnr-tii usr/bin
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..8acd608
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,15 @@
+#!/usr/bin/make -f
+
+# DH_VERBOSE := 1
+
+export DEB_BUILD_MAINT_OPTIONS=hardening=+all
+
+%:
+ dh $@
+
+override_dh_auto_build:
+ dh_auto_build
+ mv RogueNaRok roguenarok-single
+ make clean
+ dh_auto_build -- mode=parallel
+ mv RogueNaRok-parallel roguenarok-parallel
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/upstream/metadata b/debian/upstream/metadata
new file mode 100644
index 0000000..5361fd4
--- /dev/null
+++ b/debian/upstream/metadata
@@ -0,0 +1,12 @@
+Reference:
+ Author: Andre J. Aberer and Denis Krompass and Alexandros Stamatakis
+ Title: "Pruning Rogue Taxa Improves Phylogenetic Accuracy: An Efficient Algorithm and Webservice"
+ Journal: Systematic Biology
+ Year: 2013
+ Volume: 62
+ Number: 1
+ Pages: 162-166
+ DOI: 10.1093/sysbio/sys078
+ PMID: 22962004
+ URL: https://academic.oup.com/sysbio/article-lookup/doi/10.1093/sysbio/sys078
+ eprint: https://academic.oup.com/sysbio/article-pdf/62/1/162/4666711/sys078.pdf
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..0ac61d1
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,3 @@
+version=4
+
+https://github.com/aberer/RogueNaRok/releases .*/archive/v(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz)
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