[med-svn] [qcumber] 01/02: Refresh patches

[Andreas Tille]

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tille pushed a commit to tag debian/1.0.11+dfsg-1
in repository qcumber.

commit 65906564faf48303c63c71ce3549ede4f4ff3f9f
Author: Andreas Tille <tille at debian.org>
Date:   Tue Mar 14 11:10:24 2017 +0100

    Refresh patches
---
 debian/patches/check_fasta.patch                       | 4 ++--
 debian/patches/set_absolute_path_to_tex_template.patch | 2 +-
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/debian/patches/check_fasta.patch b/debian/patches/check_fasta.patch
index 858db4e..a0d015b 100644
--- a/debian/patches/check_fasta.patch
+++ b/debian/patches/check_fasta.patch
@@ -24,8 +24,8 @@
 +
  def get_illumina_reads(tmp):
  	readsets = []
- 
-@@ -232,8 +250,8 @@ def check_input_validity():
+ 	if not all([re.search(lane_pattern, x) for x in arguments["r1"]]):
+@@ -255,8 +273,8 @@ def check_input_validity():
  		if not arguments["reference"]:
  			sys.exit("Mapping needs a reference.")
  		else:
diff --git a/debian/patches/set_absolute_path_to_tex_template.patch b/debian/patches/set_absolute_path_to_tex_template.patch
index 48a9178..fa4b76e 100644
--- a/debian/patches/set_absolute_path_to_tex_template.patch
+++ b/debian/patches/set_absolute_path_to_tex_template.patch
@@ -5,7 +5,7 @@ Description: Inside the Debian package we know exactly the location of the
 
 --- a/QCumber.py
 +++ b/QCumber.py
-@@ -180,10 +180,11 @@ def writeReport(sample):
+@@ -203,10 +203,11 @@ def writeReport(sample):
  	report_name = os.path.join(sample.mainResultsPath, "Report",
  		 "summary_" + sample.name + "_" + datetime.datetime.strftime(datetime.datetime.now(), "%d-%m-%y_%H-%M"))
  	print("Writing latex " ,report_name)

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