[med-svn] [emperor] branch master updated (1f41b6f -> 698b9e5)
Kerim Ölçer
kerimlcr-guest at moszumanska.debian.org
Thu Mar 16 12:35:11 UTC 2017
This is an automated email from the git hooks/post-receive script.
kerimlcr-guest pushed a change to branch master
in repository emperor.
from 1f41b6f Fixed version
new 698b9e5 packaging erroor fixed
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
CONTRIBUTING.md | 127 +
debian/changelog | 8 +-
debian/control | 49 +-
debian/copyright | 62 +-
debian/doc-base | 8 -
debian/docs | 2 -
debian/files | 4 +
debian/make_emperor.1 | 218 -
debian/manpages | 1 -
debian/patches/fetch_examples_from_web.patch | 19 -
debian/patches/series | 1 -
debian/rules | 36 +-
debian/source/options | 1 +
debian/upstream/metadata | 12 -
doc/Makefile | 181 +
doc/README.md | 60 +
doc/bootstrap/css/bootstrap-theme.min.css | 6 +
doc/bootstrap/css/bootstrap.min.css | 6 +
.../fonts/glyphicons-halflings-regular.eot | Bin 0 -> 20127 bytes
.../fonts/glyphicons-halflings-regular.svg | 288 +
.../fonts/glyphicons-halflings-regular.ttf | Bin 0 -> 45404 bytes
.../fonts/glyphicons-halflings-regular.woff | Bin 0 -> 23424 bytes
.../fonts/glyphicons-halflings-regular.woff2 | Bin 0 -> 18028 bytes
doc/bootstrap/js/bootstrap.min.js | 7 +
doc/bootstrap/js/jquery-2.2.3.min.js | 4 +
doc/files/files.zip | Bin 0 -> 542041 bytes
doc/installation_index.html | 202 -
doc/jsdoc-config.json | 20 +
doc/source/_static/copybutton.js | 60 +
doc/source/_static/style.css | 38 +
doc/source/_templates/autosummary/attribute.rst | 9 +
doc/source/_templates/autosummary/class.rst | 27 +
doc/source/_templates/autosummary/method.rst | 9 +
doc/source/_templates/layout.html | 26 +
doc/source/conf.py | 282 +
doc/source/emperor_objects.rst | 4 +
doc/source/formats.rst | 65 +
doc/source/index.rst | 38 +
doc/source/sphinxext/numpydoc/LICENSE.txt | 94 +
doc/source/sphinxext/numpydoc/README.rst | 54 +
doc/source/sphinxext/numpydoc/numpydoc/__init__.py | 3 +
.../sphinxext/numpydoc/numpydoc/comment_eater.py | 169 +
.../numpydoc/numpydoc/compiler_unparse.py | 865 +
.../sphinxext/numpydoc/numpydoc/docscrape.py | 525 +
.../numpydoc/numpydoc/docscrape_sphinx.py | 274 +
doc/source/sphinxext/numpydoc/numpydoc/linkcode.py | 83 +
doc/source/sphinxext/numpydoc/numpydoc/numpydoc.py | 187 +
.../sphinxext/numpydoc/numpydoc/phantom_import.py | 167 +
.../sphinxext/numpydoc/numpydoc/plot_directive.py | 642 +
.../numpydoc/numpydoc/tests/test_docscrape.py | 767 +
.../numpydoc/numpydoc/tests/test_linkcode.py | 5 +
.../numpydoc/numpydoc/tests/test_phantom_import.py | 12 +
.../numpydoc/numpydoc/tests/test_plot_directive.py | 11 +
.../numpydoc/numpydoc/tests/test_traitsdoc.py | 11 +
.../sphinxext/numpydoc/numpydoc/traitsdoc.py | 142 +
emperor/_pandas.py | 103 +
emperor/core.py | 332 +
emperor/parse.py | 43 +
emperor/pycogent_backports/__init__.py | 12 -
emperor/pycogent_backports/procrustes.py | 157 -
emperor/support_files/README.md | 8 +
emperor/support_files/css/colorPicker.css | 31 -
emperor/support_files/css/d3.parcoords.css | 40 -
emperor/support_files/css/emperor.css | 62 +
.../css/images/ui-bg_flat_0_aaaaaa_40x100.png | Bin 180 -> 0 bytes
.../css/images/ui-bg_flat_75_ffffff_40x100.png | Bin 178 -> 0 bytes
.../css/images/ui-bg_glass_55_fbf9ee_1x400.png | Bin 120 -> 0 bytes
.../css/images/ui-bg_glass_65_ffffff_1x400.png | Bin 105 -> 0 bytes
.../css/images/ui-bg_glass_75_dadada_1x400.png | Bin 111 -> 0 bytes
.../css/images/ui-bg_glass_75_e6e6e6_1x400.png | Bin 110 -> 0 bytes
.../css/images/ui-bg_glass_95_fef1ec_1x400.png | Bin 119 -> 0 bytes
.../ui-bg_highlight-soft_75_cccccc_1x100.png | Bin 101 -> 0 bytes
.../css/images/ui-icons_222222_256x240.png | Bin 4369 -> 0 bytes
.../css/images/ui-icons_2e83ff_256x240.png | Bin 4369 -> 0 bytes
.../css/images/ui-icons_454545_256x240.png | Bin 4369 -> 0 bytes
.../css/images/ui-icons_888888_256x240.png | Bin 4369 -> 0 bytes
.../css/images/ui-icons_cd0a0a_256x240.png | Bin 4369 -> 0 bytes
.../support_files/css/jquery-ui-1.8.16.custom.css | 568 -
emperor/support_files/css/jquery-ui2.css | 567 -
emperor/support_files/css/spectrum.css | 408 -
emperor/support_files/emperor/css/emperor.css | 284 -
emperor/support_files/emperor/js/emperor.js | 2430 --
emperor/support_files/js/FileSaver.min.js | 2 -
emperor/support_files/js/THREEx.screenshot.js | 130 -
emperor/support_files/js/Three.js | 37637 -------------------
emperor/support_files/js/abc-view-controller.js | 187 +
emperor/support_files/js/animate.js | 276 +
emperor/support_files/js/axes-controller.js | 441 +
emperor/support_files/js/color-editor.js | 141 +
emperor/support_files/js/color-view-controller.js | 537 +
emperor/support_files/js/controller.js | 617 +
emperor/support_files/js/d3.parcoords.js | 568 -
emperor/support_files/js/d3.v3.min.js | 5 -
emperor/support_files/js/draw.js | 174 +
emperor/support_files/js/jquery-1.7.1.min.js | 4 -
.../js/jquery-ui-1.8.17.custom.min.js | 356 -
emperor/support_files/js/jquery.colorPicker.js | 328 -
emperor/support_files/js/js/AudioObject.js | 172 -
emperor/support_files/js/js/Car.js | 364 -
emperor/support_files/js/js/DAT.GUI.min.js | 53 -
emperor/support_files/js/js/Detector.js | 58 -
emperor/support_files/js/js/ImprovedNoise.js | 71 -
emperor/support_files/js/js/PRNG.js | 11 -
.../support_files/js/js/RequestAnimationFrame.js | 22 -
emperor/support_files/js/js/ShaderExtras.js | 1779 -
emperor/support_files/js/js/ShaderSkin.js | 752 -
emperor/support_files/js/js/ShaderTerrain.js | 306 -
emperor/support_files/js/js/SimplexNoise.js | 316 -
emperor/support_files/js/js/Sparks.js | 832 -
emperor/support_files/js/js/Stats.js | 8 -
emperor/support_files/js/js/Tween.js | 13 -
emperor/support_files/js/js/ctm/CTMLoader.js | 821 -
emperor/support_files/js/js/ctm/CTMWorker.js | 19 -
emperor/support_files/js/js/ctm/ctm.js | 626 -
.../support_files/js/js/ctm/license/OpenCTM.txt | 20 -
.../support_files/js/js/ctm/license/js-lzma.txt | 19 -
emperor/support_files/js/js/ctm/lzma.js | 510 -
.../js/js/postprocessing/BloomPass.js | 100 -
.../js/js/postprocessing/DotScreenPass.js | 52 -
.../js/js/postprocessing/EffectComposer.js | 136 -
.../support_files/js/js/postprocessing/FilmPass.js | 51 -
.../support_files/js/js/postprocessing/MaskPass.js | 86 -
.../js/js/postprocessing/RenderPass.js | 51 -
.../support_files/js/js/postprocessing/SavePass.js | 52 -
.../js/js/postprocessing/ShaderPass.js | 51 -
.../js/js/postprocessing/TexturePass.js | 37 -
emperor/support_files/js/model.js | 380 +
emperor/support_files/js/scale-editor.js | 124 +
emperor/support_files/js/scale-view-controller.js | 278 +
emperor/support_files/js/sceneplotview3d.js | 659 +
emperor/support_files/js/shape-controller.js | 108 +
emperor/support_files/js/shape-editor.js | 106 +
emperor/support_files/js/shapes.js | 55 +
emperor/support_files/js/specifications.txt | 1 -
emperor/support_files/js/spectrum.js | 1566 -
emperor/support_files/js/trajectory.js | 406 +
emperor/support_files/js/util.js | 147 +
emperor/support_files/js/view-controller.js | 327 +
emperor/support_files/js/view.js | 285 +
emperor/support_files/js/visibility-controller.js | 96 +
.../support_files/templates/jupyter-template.html | 3 +
.../support_files/templates/logic-template.html | 132 +
.../templates/standalone-template.html | 28 +
.../support_files/templates/style-template.html | 15 +
emperor/support_files/vendor/css/chosen-sprite.png | Bin 0 -> 538 bytes
.../support_files/vendor/css/chosen-sprite at 2x.png | Bin 0 -> 738 bytes
emperor/support_files/vendor/css/chosen.min.css | 3 +
.../vendor/css/font/context-menu-icons.eot | Bin 0 -> 4420 bytes
.../vendor/css/font/context-menu-icons.ttf | Bin 0 -> 4212 bytes
.../vendor/css/font/context-menu-icons.woff | Bin 0 -> 2732 bytes
.../vendor/css/font/context-menu-icons.woff2 | Bin 0 -> 2196 bytes
.../css/images/ui-bg_glass_55_fbf9ee_1x400.png | Bin 0 -> 335 bytes
.../css/images/ui-bg_glass_65_ffffff_1x400.png | Bin 0 -> 207 bytes
.../css/images/ui-bg_glass_75_dadada_1x400.png | Bin 0 -> 262 bytes
.../css/images/ui-bg_glass_75_e6e6e6_1x400.png | Bin 0 -> 262 bytes
.../css/images/ui-bg_glass_95_fef1ec_1x400.png | Bin 0 -> 332 bytes
.../ui-bg_highlight-soft_75_cccccc_1x100.png | Bin 0 -> 280 bytes
.../ui-bg_highlight-soft_75_ffe45c_1x100.png | Bin 0 -> 328 bytes
.../vendor/css/images/ui-icons_222222_256x240.png | Bin 0 -> 6922 bytes
.../vendor/css/images/ui-icons_2e83ff_256x240.png | Bin 0 -> 4549 bytes
.../vendor/css/images/ui-icons_454545_256x240.png | Bin 0 -> 6992 bytes
.../vendor/css/images/ui-icons_888888_256x240.png | Bin 0 -> 6999 bytes
.../vendor/css/images/ui-icons_cd0a0a_256x240.png | Bin 0 -> 4549 bytes
emperor/support_files/vendor/css/jquery-ui.min.css | 7 +
.../vendor/css/jquery.contextMenu.min.css | 15 +
.../support_files/vendor/css/slick.grid.min.css | 1 +
emperor/support_files/vendor/css/spectrum.min.css | 1 +
emperor/support_files/vendor/js/Blob.js | 16 +
emperor/support_files/vendor/js/FileSaver.min.js | 2 +
.../support_files/vendor/js/chosen.jquery.min.js | 2 +
emperor/support_files/vendor/js/chroma.min.js | 33 +
emperor/support_files/vendor/js/d3.min.js | 5 +
.../support_files/vendor/js/jquery-2.1.4.min.js | 4 +
emperor/support_files/vendor/js/jquery-ui.min.js | 13 +
.../vendor/js/jquery.contextMenu.min.js | 18 +
.../vendor/js/jquery.event.drag-2.2.min.js | 6 +
.../vendor/js/jquery.ui.position.min.js | 4 +
.../support_files/vendor/js/require-2.1.22.min.js | 37 +
emperor/support_files/vendor/js/slick.core.min.js | 1 +
.../support_files/vendor/js/slick.editors.min.js | 1 +
.../vendor/js/slick.formatters.min.js | 1 +
emperor/support_files/vendor/js/slick.grid.min.js | 2 +
emperor/support_files/vendor/js/spectrum.min.js | 1 +
.../vendor/js/three.js-plugins/ColorConverter.js | 64 +
.../vendor/js/three.js-plugins/Detector.js | 78 +
.../vendor/js/three.js-plugins/OrbitControls.js | 1115 +
.../vendor/js/three.js-plugins/Projector.js | 921 +
.../vendor/js/three.js-plugins/SVGRenderer.js | 519 +
emperor/support_files/vendor/js/three.min.js | 870 +
emperor/support_files/vendor/js/underscore-min.js | 6 +
examples/build.py | 57 +
examples/costello/mapping-file.txt | 603 +
examples/costello/unweighted_unifrac_pc.txt | 426 +
examples/evident.ipynb | 417 +
examples/images/costello-all.png | Bin 0 -> 246498 bytes
examples/images/costello-colored.png | Bin 0 -> 219922 bytes
examples/images/costello.png | Bin 0 -> 162347 bytes
examples/images/distance-matrix.png | Bin 0 -> 127113 bytes
examples/images/glitch.gif | Bin 0 -> 619226 bytes
examples/images/js-doc.png | Bin 0 -> 608082 bytes
examples/images/knight-logo.png | Bin 0 -> 352700 bytes
examples/images/main-doc.png | Bin 0 -> 643803 bytes
examples/images/microbes-metric.png | Bin 0 -> 1891951 bytes
examples/images/microbes.png | Bin 0 -> 1925687 bytes
examples/images/python-doc-2.png | Bin 0 -> 524954 bytes
examples/images/python-doc.png | Bin 0 -> 658546 bytes
examples/images/qiime_logo_large.png | Bin 0 -> 10901 bytes
examples/images/table-2.png | Bin 0 -> 62541 bytes
examples/images/table.png | Bin 0 -> 65581 bytes
examples/images/vroom.png | Bin 0 -> 7106344 bytes
examples/keyboard.ipynb | 295 +
examples/keyboard/mapping-file.txt | 116 +
examples/keyboard/otu-table.biom | Bin 0 -> 926963 bytes
examples/keyboard/unweighted-unifrac.even1000.txt | 90 +
examples/scipy-2016.ipynb | 4304 +++
examples/tips.csv | 245 +
licenses/nb-slideshow-template.txt | 30 +
licenses/numpydoc.txt | 1 +
licenses/scikit-learn.txt | 35 +
licenses/scipy.txt | 31 +
.../sphinx-bootstrap-theme.txt | 2 +-
licenses/ssw.txt | 46 +
scripts/make_emperor.py => tests/__init__.py | 5 -
tests/_test_core_strings.py | 544 +
tests/javascript_tests/index.html | 210 +
tests/javascript_tests/qunit/qunit-min.css | 11 +
tests/javascript_tests/qunit/qunit-min.js | 11 +
tests/javascript_tests/runner.js | 165 +
tests/javascript_tests/test_animate.js | 328 +
tests/javascript_tests/test_axes_controller.js | 146 +
.../javascript_tests/test_color_view_controller.js | 544 +
tests/javascript_tests/test_decomposition_model.js | 633 +
tests/javascript_tests/test_decomposition_view.js | 218 +
tests/javascript_tests/test_draw.js | 164 +
tests/javascript_tests/test_plottable.js | 106 +
.../javascript_tests/test_scale_view_controller.js | 213 +
tests/javascript_tests/test_sceneplotview3d.js | 529 +
tests/javascript_tests/test_shape_controller.js | 189 +
tests/javascript_tests/test_trajectory.js | 528 +
tests/javascript_tests/test_util.js | 161 +
tests/javascript_tests/test_view_controller.js | 444 +
.../javascript_tests/test_visibility_controller.js | 145 +
.../make_emperor/euclidian_pc.txt | 22 +
tests/test_core.py | 152 +
tests/test_data/.some-hidden-file | 0
tests/test_data/dir-with-only-hidden-files/.1.txt | 0
tests/test_data/dir-with-only-hidden-files/.2.txt | 0
tests/test_data/dir-with-only-hidden-files/.3.txt | 0
tests/test_data/dir-with-only-hidden-files/.4.txt | 0
tests/test_data/procrustes_results.txt | 0
...unweighted_unifrac_pc_transformed_reference.txt | 0
.../weighted_unifrac_pc_transformed_q1.txt | 0
tests/test_pandas.py | 105 +
tests/test_parse.py | 106 +
tests/test_pycogent_backports/test_procrustes.py | 139 -
255 files changed, 27534 insertions(+), 53171 deletions(-)
create mode 100644 CONTRIBUTING.md
delete mode 100644 debian/doc-base
delete mode 100644 debian/docs
create mode 100644 debian/files
delete mode 100644 debian/make_emperor.1
delete mode 100644 debian/manpages
delete mode 100644 debian/patches/fetch_examples_from_web.patch
delete mode 100644 debian/patches/series
create mode 100644 debian/source/options
delete mode 100644 debian/upstream/metadata
create mode 100644 doc/Makefile
create mode 100644 doc/README.md
create mode 100644 doc/bootstrap/css/bootstrap-theme.min.css
create mode 100644 doc/bootstrap/css/bootstrap.min.css
create mode 100644 doc/bootstrap/fonts/glyphicons-halflings-regular.eot
create mode 100644 doc/bootstrap/fonts/glyphicons-halflings-regular.svg
create mode 100644 doc/bootstrap/fonts/glyphicons-halflings-regular.ttf
create mode 100644 doc/bootstrap/fonts/glyphicons-halflings-regular.woff
create mode 100644 doc/bootstrap/fonts/glyphicons-halflings-regular.woff2
create mode 100644 doc/bootstrap/js/bootstrap.min.js
create mode 100644 doc/bootstrap/js/jquery-2.2.3.min.js
create mode 100644 doc/files/files.zip
delete mode 100644 doc/installation_index.html
create mode 100644 doc/jsdoc-config.json
create mode 100644 doc/source/_static/copybutton.js
create mode 100644 doc/source/_static/style.css
create mode 100644 doc/source/_templates/autosummary/attribute.rst
create mode 100644 doc/source/_templates/autosummary/class.rst
create mode 100644 doc/source/_templates/autosummary/method.rst
create mode 100644 doc/source/_templates/layout.html
create mode 100644 doc/source/conf.py
create mode 100644 doc/source/emperor_objects.rst
create mode 100644 doc/source/formats.rst
create mode 100644 doc/source/index.rst
create mode 100644 doc/source/sphinxext/numpydoc/LICENSE.txt
create mode 100644 doc/source/sphinxext/numpydoc/README.rst
create mode 100644 doc/source/sphinxext/numpydoc/numpydoc/__init__.py
create mode 100644 doc/source/sphinxext/numpydoc/numpydoc/comment_eater.py
create mode 100644 doc/source/sphinxext/numpydoc/numpydoc/compiler_unparse.py
create mode 100644 doc/source/sphinxext/numpydoc/numpydoc/docscrape.py
create mode 100644 doc/source/sphinxext/numpydoc/numpydoc/docscrape_sphinx.py
create mode 100644 doc/source/sphinxext/numpydoc/numpydoc/linkcode.py
create mode 100644 doc/source/sphinxext/numpydoc/numpydoc/numpydoc.py
create mode 100644 doc/source/sphinxext/numpydoc/numpydoc/phantom_import.py
create mode 100644 doc/source/sphinxext/numpydoc/numpydoc/plot_directive.py
create mode 100644 doc/source/sphinxext/numpydoc/numpydoc/tests/test_docscrape.py
create mode 100644 doc/source/sphinxext/numpydoc/numpydoc/tests/test_linkcode.py
create mode 100644 doc/source/sphinxext/numpydoc/numpydoc/tests/test_phantom_import.py
create mode 100644 doc/source/sphinxext/numpydoc/numpydoc/tests/test_plot_directive.py
create mode 100644 doc/source/sphinxext/numpydoc/numpydoc/tests/test_traitsdoc.py
create mode 100644 doc/source/sphinxext/numpydoc/numpydoc/traitsdoc.py
create mode 100644 emperor/_pandas.py
create mode 100644 emperor/core.py
create mode 100644 emperor/parse.py
delete mode 100644 emperor/pycogent_backports/__init__.py
delete mode 100644 emperor/pycogent_backports/procrustes.py
create mode 100644 emperor/support_files/README.md
delete mode 100755 emperor/support_files/css/colorPicker.css
delete mode 100644 emperor/support_files/css/d3.parcoords.css
create mode 100644 emperor/support_files/css/emperor.css
delete mode 100755 emperor/support_files/css/images/ui-bg_flat_0_aaaaaa_40x100.png
delete mode 100755 emperor/support_files/css/images/ui-bg_flat_75_ffffff_40x100.png
delete mode 100755 emperor/support_files/css/images/ui-bg_glass_55_fbf9ee_1x400.png
delete mode 100755 emperor/support_files/css/images/ui-bg_glass_65_ffffff_1x400.png
delete mode 100755 emperor/support_files/css/images/ui-bg_glass_75_dadada_1x400.png
delete mode 100755 emperor/support_files/css/images/ui-bg_glass_75_e6e6e6_1x400.png
delete mode 100755 emperor/support_files/css/images/ui-bg_glass_95_fef1ec_1x400.png
delete mode 100755 emperor/support_files/css/images/ui-bg_highlight-soft_75_cccccc_1x100.png
delete mode 100755 emperor/support_files/css/images/ui-icons_222222_256x240.png
delete mode 100755 emperor/support_files/css/images/ui-icons_2e83ff_256x240.png
delete mode 100755 emperor/support_files/css/images/ui-icons_454545_256x240.png
delete mode 100755 emperor/support_files/css/images/ui-icons_888888_256x240.png
delete mode 100755 emperor/support_files/css/images/ui-icons_cd0a0a_256x240.png
delete mode 100755 emperor/support_files/css/jquery-ui-1.8.16.custom.css
delete mode 100644 emperor/support_files/css/jquery-ui2.css
delete mode 100755 emperor/support_files/css/spectrum.css
delete mode 100644 emperor/support_files/emperor/css/emperor.css
delete mode 100644 emperor/support_files/emperor/js/emperor.js
delete mode 100755 emperor/support_files/js/FileSaver.min.js
delete mode 100644 emperor/support_files/js/THREEx.screenshot.js
delete mode 100644 emperor/support_files/js/Three.js
create mode 100644 emperor/support_files/js/abc-view-controller.js
create mode 100644 emperor/support_files/js/animate.js
create mode 100644 emperor/support_files/js/axes-controller.js
create mode 100644 emperor/support_files/js/color-editor.js
create mode 100644 emperor/support_files/js/color-view-controller.js
create mode 100644 emperor/support_files/js/controller.js
delete mode 100644 emperor/support_files/js/d3.parcoords.js
delete mode 100644 emperor/support_files/js/d3.v3.min.js
create mode 100644 emperor/support_files/js/draw.js
delete mode 100644 emperor/support_files/js/jquery-1.7.1.min.js
delete mode 100755 emperor/support_files/js/jquery-ui-1.8.17.custom.min.js
delete mode 100755 emperor/support_files/js/jquery.colorPicker.js
delete mode 100644 emperor/support_files/js/js/AudioObject.js
delete mode 100644 emperor/support_files/js/js/Car.js
delete mode 100644 emperor/support_files/js/js/DAT.GUI.min.js
delete mode 100644 emperor/support_files/js/js/Detector.js
delete mode 100644 emperor/support_files/js/js/ImprovedNoise.js
delete mode 100644 emperor/support_files/js/js/PRNG.js
delete mode 100644 emperor/support_files/js/js/RequestAnimationFrame.js
delete mode 100644 emperor/support_files/js/js/ShaderExtras.js
delete mode 100644 emperor/support_files/js/js/ShaderSkin.js
delete mode 100644 emperor/support_files/js/js/ShaderTerrain.js
delete mode 100644 emperor/support_files/js/js/SimplexNoise.js
delete mode 100644 emperor/support_files/js/js/Sparks.js
delete mode 100644 emperor/support_files/js/js/Stats.js
delete mode 100644 emperor/support_files/js/js/Tween.js
delete mode 100644 emperor/support_files/js/js/ctm/CTMLoader.js
delete mode 100644 emperor/support_files/js/js/ctm/CTMWorker.js
delete mode 100644 emperor/support_files/js/js/ctm/ctm.js
delete mode 100644 emperor/support_files/js/js/ctm/license/OpenCTM.txt
delete mode 100644 emperor/support_files/js/js/ctm/license/js-lzma.txt
delete mode 100644 emperor/support_files/js/js/ctm/lzma.js
delete mode 100644 emperor/support_files/js/js/postprocessing/BloomPass.js
delete mode 100644 emperor/support_files/js/js/postprocessing/DotScreenPass.js
delete mode 100644 emperor/support_files/js/js/postprocessing/EffectComposer.js
delete mode 100644 emperor/support_files/js/js/postprocessing/FilmPass.js
delete mode 100644 emperor/support_files/js/js/postprocessing/MaskPass.js
delete mode 100644 emperor/support_files/js/js/postprocessing/RenderPass.js
delete mode 100644 emperor/support_files/js/js/postprocessing/SavePass.js
delete mode 100644 emperor/support_files/js/js/postprocessing/ShaderPass.js
delete mode 100644 emperor/support_files/js/js/postprocessing/TexturePass.js
create mode 100644 emperor/support_files/js/model.js
create mode 100644 emperor/support_files/js/scale-editor.js
create mode 100644 emperor/support_files/js/scale-view-controller.js
create mode 100644 emperor/support_files/js/sceneplotview3d.js
create mode 100644 emperor/support_files/js/shape-controller.js
create mode 100644 emperor/support_files/js/shape-editor.js
create mode 100644 emperor/support_files/js/shapes.js
delete mode 100644 emperor/support_files/js/specifications.txt
delete mode 100755 emperor/support_files/js/spectrum.js
create mode 100644 emperor/support_files/js/trajectory.js
create mode 100644 emperor/support_files/js/util.js
create mode 100644 emperor/support_files/js/view-controller.js
create mode 100644 emperor/support_files/js/view.js
create mode 100644 emperor/support_files/js/visibility-controller.js
create mode 100644 emperor/support_files/templates/jupyter-template.html
create mode 100644 emperor/support_files/templates/logic-template.html
create mode 100644 emperor/support_files/templates/standalone-template.html
create mode 100644 emperor/support_files/templates/style-template.html
create mode 100644 emperor/support_files/vendor/css/chosen-sprite.png
create mode 100644 emperor/support_files/vendor/css/chosen-sprite at 2x.png
create mode 100644 emperor/support_files/vendor/css/chosen.min.css
create mode 100644 emperor/support_files/vendor/css/font/context-menu-icons.eot
create mode 100644 emperor/support_files/vendor/css/font/context-menu-icons.ttf
create mode 100644 emperor/support_files/vendor/css/font/context-menu-icons.woff
create mode 100644 emperor/support_files/vendor/css/font/context-menu-icons.woff2
create mode 100644 emperor/support_files/vendor/css/images/ui-bg_glass_55_fbf9ee_1x400.png
create mode 100644 emperor/support_files/vendor/css/images/ui-bg_glass_65_ffffff_1x400.png
create mode 100644 emperor/support_files/vendor/css/images/ui-bg_glass_75_dadada_1x400.png
create mode 100644 emperor/support_files/vendor/css/images/ui-bg_glass_75_e6e6e6_1x400.png
create mode 100644 emperor/support_files/vendor/css/images/ui-bg_glass_95_fef1ec_1x400.png
create mode 100644 emperor/support_files/vendor/css/images/ui-bg_highlight-soft_75_cccccc_1x100.png
create mode 100644 emperor/support_files/vendor/css/images/ui-bg_highlight-soft_75_ffe45c_1x100.png
create mode 100644 emperor/support_files/vendor/css/images/ui-icons_222222_256x240.png
create mode 100644 emperor/support_files/vendor/css/images/ui-icons_2e83ff_256x240.png
create mode 100644 emperor/support_files/vendor/css/images/ui-icons_454545_256x240.png
create mode 100644 emperor/support_files/vendor/css/images/ui-icons_888888_256x240.png
create mode 100644 emperor/support_files/vendor/css/images/ui-icons_cd0a0a_256x240.png
create mode 100644 emperor/support_files/vendor/css/jquery-ui.min.css
create mode 100644 emperor/support_files/vendor/css/jquery.contextMenu.min.css
create mode 100644 emperor/support_files/vendor/css/slick.grid.min.css
create mode 100644 emperor/support_files/vendor/css/spectrum.min.css
create mode 100644 emperor/support_files/vendor/js/Blob.js
create mode 100644 emperor/support_files/vendor/js/FileSaver.min.js
create mode 100644 emperor/support_files/vendor/js/chosen.jquery.min.js
create mode 100644 emperor/support_files/vendor/js/chroma.min.js
create mode 100644 emperor/support_files/vendor/js/d3.min.js
create mode 100644 emperor/support_files/vendor/js/jquery-2.1.4.min.js
create mode 100644 emperor/support_files/vendor/js/jquery-ui.min.js
create mode 100644 emperor/support_files/vendor/js/jquery.contextMenu.min.js
create mode 100644 emperor/support_files/vendor/js/jquery.event.drag-2.2.min.js
create mode 100644 emperor/support_files/vendor/js/jquery.ui.position.min.js
create mode 100644 emperor/support_files/vendor/js/require-2.1.22.min.js
create mode 100644 emperor/support_files/vendor/js/slick.core.min.js
create mode 100644 emperor/support_files/vendor/js/slick.editors.min.js
create mode 100644 emperor/support_files/vendor/js/slick.formatters.min.js
create mode 100644 emperor/support_files/vendor/js/slick.grid.min.js
create mode 100644 emperor/support_files/vendor/js/spectrum.min.js
create mode 100644 emperor/support_files/vendor/js/three.js-plugins/ColorConverter.js
create mode 100644 emperor/support_files/vendor/js/three.js-plugins/Detector.js
create mode 100644 emperor/support_files/vendor/js/three.js-plugins/OrbitControls.js
create mode 100644 emperor/support_files/vendor/js/three.js-plugins/Projector.js
create mode 100644 emperor/support_files/vendor/js/three.js-plugins/SVGRenderer.js
create mode 100644 emperor/support_files/vendor/js/three.min.js
create mode 100644 emperor/support_files/vendor/js/underscore-min.js
create mode 100755 examples/build.py
create mode 100644 examples/costello/mapping-file.txt
create mode 100644 examples/costello/unweighted_unifrac_pc.txt
create mode 100644 examples/evident.ipynb
create mode 100644 examples/images/costello-all.png
create mode 100644 examples/images/costello-colored.png
create mode 100644 examples/images/costello.png
create mode 100644 examples/images/distance-matrix.png
create mode 100644 examples/images/glitch.gif
create mode 100644 examples/images/js-doc.png
create mode 100644 examples/images/knight-logo.png
create mode 100644 examples/images/main-doc.png
create mode 100644 examples/images/microbes-metric.png
create mode 100644 examples/images/microbes.png
create mode 100644 examples/images/python-doc-2.png
create mode 100644 examples/images/python-doc.png
create mode 100644 examples/images/qiime_logo_large.png
create mode 100644 examples/images/table-2.png
create mode 100644 examples/images/table.png
create mode 100644 examples/images/vroom.png
create mode 100644 examples/keyboard.ipynb
create mode 100644 examples/keyboard/mapping-file.txt
create mode 100644 examples/keyboard/otu-table.biom
create mode 100644 examples/keyboard/unweighted-unifrac.even1000.txt
create mode 100644 examples/scipy-2016.ipynb
create mode 100644 examples/tips.csv
create mode 100644 licenses/nb-slideshow-template.txt
create mode 100644 licenses/numpydoc.txt
create mode 100644 licenses/scikit-learn.txt
create mode 100644 licenses/scipy.txt
rename emperor/support_files/js/js/ctm/license/js-openctm.txt => licenses/sphinx-bootstrap-theme.txt (96%)
create mode 100644 licenses/ssw.txt
copy scripts/make_emperor.py => tests/__init__.py (68%)
mode change 100755 => 100644
create mode 100644 tests/_test_core_strings.py
create mode 100644 tests/javascript_tests/index.html
create mode 100644 tests/javascript_tests/qunit/qunit-min.css
create mode 100644 tests/javascript_tests/qunit/qunit-min.js
create mode 100644 tests/javascript_tests/runner.js
create mode 100644 tests/javascript_tests/test_animate.js
create mode 100644 tests/javascript_tests/test_axes_controller.js
create mode 100644 tests/javascript_tests/test_color_view_controller.js
create mode 100644 tests/javascript_tests/test_decomposition_model.js
create mode 100644 tests/javascript_tests/test_decomposition_view.js
create mode 100644 tests/javascript_tests/test_draw.js
create mode 100644 tests/javascript_tests/test_plottable.js
create mode 100644 tests/javascript_tests/test_scale_view_controller.js
create mode 100644 tests/javascript_tests/test_sceneplotview3d.js
create mode 100644 tests/javascript_tests/test_shape_controller.js
create mode 100644 tests/javascript_tests/test_trajectory.js
create mode 100644 tests/javascript_tests/test_util.js
create mode 100644 tests/javascript_tests/test_view_controller.js
create mode 100644 tests/javascript_tests/test_visibility_controller.js
create mode 100644 tests/scripts_test_data/make_emperor/euclidian_pc.txt
create mode 100644 tests/test_core.py
create mode 100644 tests/test_data/.some-hidden-file
create mode 100644 tests/test_data/dir-with-only-hidden-files/.1.txt
create mode 100644 tests/test_data/dir-with-only-hidden-files/.2.txt
create mode 100644 tests/test_data/dir-with-only-hidden-files/.3.txt
create mode 100644 tests/test_data/dir-with-only-hidden-files/.4.txt
create mode 100644 tests/test_data/procrustes_results.txt
create mode 100644 tests/test_data/unweighted_unifrac_pc_transformed_reference.txt
create mode 100644 tests/test_data/weighted_unifrac_pc_transformed_q1.txt
create mode 100644 tests/test_pandas.py
create mode 100644 tests/test_parse.py
delete mode 100755 tests/test_pycogent_backports/test_procrustes.py
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/emperor.git
More information about the debian-med-commit
mailing list