[med-svn] [paml] 02/03: Merge tag 'upstream/4.9e+dfsg'

[Andreas Tille]

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tille pushed a commit to branch master
in repository paml.

commit 2371206083d306edd59da42bc430fe5a08be4dde
Merge: 99e336b b308d0b
Author: Andreas Tille <tille at debian.org>
Date:   Fri Mar 17 21:28:32 2017 +0100

    Merge tag 'upstream/4.9e+dfsg'
    
    Upstream version 4.9e+dfsg

 README.txt                                      |   11 +-
 doc/pamlHistory.txt                             |   29 +
 doc/{pamlHistory.txt => pamlHistory.txt~}       |   23 +
 examples/DatingSoftBound/BF.Clock23.xlsx        |  Bin 0 -> 20563 bytes
 examples/DatingSoftBound/README.BayesFactor.txt |   26 +
 examples/DatingSoftBound/{ => bf1}/mcmctree.ctl |   17 +-
 examples/DatingSoftBound/{ => bf2}/mcmctree.ctl |   13 +-
 examples/DatingSoftBound/mcmctree.ctl           |    5 +-
 examples/DatingSoftBound/mtCDNApri.trees        |    4 +
 src/BFdriver.c                                  |   74 +
 src/README.txt                                  |    3 +-
 src/baseml.c                                    |    6 +-
 src/chi2.c                                      |   14 +-
 src/codeml.c                                    |    2 +-
 src/evolver.c                                   | 2630 +++++++++++------------
 src/mcmctree.c                                  |   89 +-
 src/paml.h                                      |    9 +-
 src/pamp.c                                      | 1290 +++++------
 src/tools.c                                     |  223 +-
 src/treesub.c                                   |  715 +++---
 src/yn00.c                                      | 1814 ++++++++--------
 21 files changed, 3647 insertions(+), 3350 deletions(-)

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