[med-svn] [seer] branch debian/jessie-backports updated (b7d51ae -> c8fa4f0)
Andreas Tille
tille at debian.org
Wed Mar 22 11:34:26 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch debian/jessie-backports
in repository seer.
from b7d51ae gbp-buildpackage did not seem to like mentioning the version :-(
adds 1bbef7e Add versioned Build-Depends libarmadillo-dev
adds df7df2f New upstream version 1.1.2
adds 8ee9fdd Merge tag 'upstream/1.1.2'
adds a5e9f0d New upstream version
adds 65ca01f debhelper 10
adds 5db2d05 d/watch: version=4
adds 5602aa6 Upload to unstable
adds 2ad3914 Install all available scripts in scripts/ dir into binary package
new 4b9f4e5 Merge branch 'master' into debian/jessie-backports
new c8fa4f0 Rebuild for jessie-backports
The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
.gitignore | 3 +-
.travis.yml | 18 +
README.md | 47 +-
debian/changelog | 22 +
debian/compat | 2 +-
debian/control | 6 +-
debian/rules | 4 +-
debian/watch | 2 +-
scripts/R_mds.pl | 143 +
scripts/blast_top_hits.pl | 2 +-
scripts/mash2matrix.pl | 60 +
seer-logo.png | Bin 0 -> 30410 bytes
src/Makefile | 9 +
src/filterCmdLine.cpp | 6 +
src/filter_seer.hpp | 3 +
src/kmdsCmdLine.cpp | 8 +-
src/kmdsStruct.cpp | 5 +-
src/mapCmdLine.cpp | 6 +
src/mapMain.cpp | 6 +
src/map_back.hpp | 1 +
src/seerBinaryAssoc.cpp | 2 +-
src/seerCmdLine.cpp | 7 +-
src/seerCommon.cpp | 9 -
src/seerFilter.cpp | 31 +-
src/seerIO.cpp | 6 +-
src/seerMain.cpp | 9 +
src/seercommon.hpp | 4 +-
src/significant_kmer.cpp | 38 +-
src/significant_kmer.hpp | 6 +
test/6259_5_16.fa | 35643 ++++++++++++++++++++++++++++++++++
test/all_structure_new | Bin 75800 -> 196442 bytes
test/assembly_locations.txt | 1 +
test/map_in.txt | 2 +
test/run_test.pl | 25 +-
test/{test1.txt => test1.e.txt} | 4 +-
test/test1.o.txt | 1 +
test/{test1.txt => test2.e.txt} | 4 +-
test/{test2.txt => test2.o.txt} | 3 -
test/{test1.txt => test3.e.txt} | 4 +-
test/{test3.txt => test3.o.txt} | 3 -
test/test4.e.txt | 6 +
test/{test4.txt => test4.o.txt} | 3 -
test/{test1.txt => test5.e.txt} | 4 +-
test/{test5.txt => test5.o.txt} | 3 -
test/{test1.txt => test6.e.txt} | 4 +-
test/{filter_in.txt => test6.o.txt} | 0
test/test6.txt | 178 -
test/test7.e.txt | 2 +
test/{test7.txt => test7.o.txt} | 308 +-
test/test8.e.txt | 4 +
test/test8.o.txt | 1 +
51 files changed, 36251 insertions(+), 417 deletions(-)
create mode 100644 .travis.yml
create mode 100755 scripts/R_mds.pl
create mode 100755 scripts/mash2matrix.pl
create mode 100644 seer-logo.png
create mode 100755 test/6259_5_16.fa
create mode 100644 test/assembly_locations.txt
create mode 100644 test/map_in.txt
copy test/{test1.txt => test1.e.txt} (51%)
create mode 100644 test/test1.o.txt
copy test/{test1.txt => test2.e.txt} (51%)
rename test/{test2.txt => test2.o.txt} (99%)
copy test/{test1.txt => test3.e.txt} (51%)
rename test/{test3.txt => test3.o.txt} (99%)
create mode 100644 test/test4.e.txt
rename test/{test4.txt => test4.o.txt} (94%)
copy test/{test1.txt => test5.e.txt} (51%)
rename test/{test5.txt => test5.o.txt} (99%)
rename test/{test1.txt => test6.e.txt} (51%)
copy test/{filter_in.txt => test6.o.txt} (100%)
delete mode 100644 test/test6.txt
create mode 100644 test/test7.e.txt
rename test/{test7.txt => test7.o.txt} (65%)
create mode 100644 test/test8.e.txt
create mode 100644 test/test8.o.txt
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