[med-svn] [seer] branch debian/jessie-backports updated (b7d51ae -> c8fa4f0)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch debian/jessie-backports
in repository seer.

      from  b7d51ae   gbp-buildpackage did not seem to like mentioning the version :-(
      adds  1bbef7e   Add versioned Build-Depends libarmadillo-dev
      adds  df7df2f   New upstream version 1.1.2
      adds  8ee9fdd   Merge tag 'upstream/1.1.2'
      adds  a5e9f0d   New upstream version
      adds  65ca01f   debhelper 10
      adds  5db2d05   d/watch: version=4
      adds  5602aa6   Upload to unstable
      adds  2ad3914   Install all available scripts in scripts/ dir into binary package
       new  4b9f4e5   Merge branch 'master' into debian/jessie-backports
       new  c8fa4f0   Rebuild for jessie-backports

The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .gitignore                          |     3 +-
 .travis.yml                         |    18 +
 README.md                           |    47 +-
 debian/changelog                    |    22 +
 debian/compat                       |     2 +-
 debian/control                      |     6 +-
 debian/rules                        |     4 +-
 debian/watch                        |     2 +-
 scripts/R_mds.pl                    |   143 +
 scripts/blast_top_hits.pl           |     2 +-
 scripts/mash2matrix.pl              |    60 +
 seer-logo.png                       |   Bin 0 -> 30410 bytes
 src/Makefile                        |     9 +
 src/filterCmdLine.cpp               |     6 +
 src/filter_seer.hpp                 |     3 +
 src/kmdsCmdLine.cpp                 |     8 +-
 src/kmdsStruct.cpp                  |     5 +-
 src/mapCmdLine.cpp                  |     6 +
 src/mapMain.cpp                     |     6 +
 src/map_back.hpp                    |     1 +
 src/seerBinaryAssoc.cpp             |     2 +-
 src/seerCmdLine.cpp                 |     7 +-
 src/seerCommon.cpp                  |     9 -
 src/seerFilter.cpp                  |    31 +-
 src/seerIO.cpp                      |     6 +-
 src/seerMain.cpp                    |     9 +
 src/seercommon.hpp                  |     4 +-
 src/significant_kmer.cpp            |    38 +-
 src/significant_kmer.hpp            |     6 +
 test/6259_5_16.fa                   | 35643 ++++++++++++++++++++++++++++++++++
 test/all_structure_new              |   Bin 75800 -> 196442 bytes
 test/assembly_locations.txt         |     1 +
 test/map_in.txt                     |     2 +
 test/run_test.pl                    |    25 +-
 test/{test1.txt => test1.e.txt}     |     4 +-
 test/test1.o.txt                    |     1 +
 test/{test1.txt => test2.e.txt}     |     4 +-
 test/{test2.txt => test2.o.txt}     |     3 -
 test/{test1.txt => test3.e.txt}     |     4 +-
 test/{test3.txt => test3.o.txt}     |     3 -
 test/test4.e.txt                    |     6 +
 test/{test4.txt => test4.o.txt}     |     3 -
 test/{test1.txt => test5.e.txt}     |     4 +-
 test/{test5.txt => test5.o.txt}     |     3 -
 test/{test1.txt => test6.e.txt}     |     4 +-
 test/{filter_in.txt => test6.o.txt} |     0
 test/test6.txt                      |   178 -
 test/test7.e.txt                    |     2 +
 test/{test7.txt => test7.o.txt}     |   308 +-
 test/test8.e.txt                    |     4 +
 test/test8.o.txt                    |     1 +
 51 files changed, 36251 insertions(+), 417 deletions(-)
 create mode 100644 .travis.yml
 create mode 100755 scripts/R_mds.pl
 create mode 100755 scripts/mash2matrix.pl
 create mode 100644 seer-logo.png
 create mode 100755 test/6259_5_16.fa
 create mode 100644 test/assembly_locations.txt
 create mode 100644 test/map_in.txt
 copy test/{test1.txt => test1.e.txt} (51%)
 create mode 100644 test/test1.o.txt
 copy test/{test1.txt => test2.e.txt} (51%)
 rename test/{test2.txt => test2.o.txt} (99%)
 copy test/{test1.txt => test3.e.txt} (51%)
 rename test/{test3.txt => test3.o.txt} (99%)
 create mode 100644 test/test4.e.txt
 rename test/{test4.txt => test4.o.txt} (94%)
 copy test/{test1.txt => test5.e.txt} (51%)
 rename test/{test5.txt => test5.o.txt} (99%)
 rename test/{test1.txt => test6.e.txt} (51%)
 copy test/{filter_in.txt => test6.o.txt} (100%)
 delete mode 100644 test/test6.txt
 create mode 100644 test/test7.e.txt
 rename test/{test7.txt => test7.o.txt} (65%)
 create mode 100644 test/test8.e.txt
 create mode 100644 test/test8.o.txt

-- 
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