[med-svn] [prank] 01/01: Wrong directory deleted
Büşra Selin Pekişçi
busraselinpekisci-guest at moszumanska.debian.org
Wed Mar 22 22:52:35 UTC 2017
This is an automated email from the git hooks/post-receive script.
busraselinpekisci-guest pushed a commit to branch master
in repository prank.
commit a68aaabe377f66933b4141929c61ffb153604d74
Author: Büşra Selin Pekişçi <busra.pekisci at gmail.com>
Date: Thu Mar 23 01:51:58 2017 +0300
Wrong directory deleted
---
debian/prank/DEBIAN/control | 37 ---------------------
debian/prank/DEBIAN/md5sums | 6 ----
debian/prank/usr/bin/prank | Bin 1096080 -> 0 bytes
.../prank/usr/share/doc/prank/changelog.Debian.gz | Bin 584 -> 0 bytes
debian/prank/usr/share/doc/prank/changelog.gz | Bin 1433 -> 0 bytes
debian/prank/usr/share/doc/prank/copyright | 31 -----------------
.../share/doc/prank/examples/sample.cdna.fasta.gz | Bin 5527 -> 0 bytes
debian/prank/usr/share/man/man1/prank.1.gz | Bin 2904 -> 0 bytes
8 files changed, 74 deletions(-)
diff --git a/debian/prank/DEBIAN/control b/debian/prank/DEBIAN/control
deleted file mode 100644
index 6faa3a6..0000000
--- a/debian/prank/DEBIAN/control
+++ /dev/null
@@ -1,37 +0,0 @@
-Package: prank
-Version: 0.0.150803-3
-Architecture: amd64
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Installed-Size: 1095
-Depends: libc6 (>= 2.14), libgcc1 (>= 1:3.0), libstdc++6 (>= 5.2)
-Enhances: t-coffee
-Section: science
-Priority: optional
-Homepage: http://wasabiapp.org/software/prank/
-Description: Probabilistic Alignment Kit for DNA, codon and amino-acid sequences
- PRANK is a probabilistic multiple alignment program for DNA, codon
- and amino-acid sequences. It's based on a novel algorithm that treats
- insertions correctly and avoids over-estimation of the number of
- deletion events. In addition, PRANK borrows ideas from maximum
- likelihood methods used in phylogenetics and correctly takes into
- account the evolutionary distances between sequences. Lastly, PRANK
- allows for defining a potential structure for sequences to be aligned
- and then, simultaneously with the alignment, predicts the locations
- of structural units in the sequences.
- .
- PRANK is a command-line program for UNIX-style environments but the
- same sequence alignment engine is implemented in the graphical
- program PRANKSTER. In addition to providing a user-friendly interface
- to those not familiar with Unix systems, PRANKSTER is an alignment
- browser for alignments saved in the HSAML format. The novel format
- allows for storing all the information generated by the aligner and
- the alignment browser is a convenient way to analyse and manipulate
- the data.
- .
- PRANK aims at an evolutionarily correct sequence alignment and often
- the result looks different from ones generated with other alignment
- methods. There are, however, cases where the different look is caused
- by violations of the method's assumptions. To understand why things
- may go wrong and how to avoid that, read this explanation of
- differences between PRANK and traditional progressive alignment
- methods.
diff --git a/debian/prank/DEBIAN/md5sums b/debian/prank/DEBIAN/md5sums
deleted file mode 100644
index dae6d3f..0000000
--- a/debian/prank/DEBIAN/md5sums
+++ /dev/null
@@ -1,6 +0,0 @@
-19078c1ddb652f9b2782fd1fb9f51b73 usr/bin/prank
-f3fa5d58a2a22150837c2af2ffb2b6c7 usr/share/doc/prank/changelog.Debian.gz
-ffa55dc2daaa63a0765e2eec6e592ca5 usr/share/doc/prank/changelog.gz
-3fb9292c389f6d47f7f504b4cb2b91fa usr/share/doc/prank/copyright
-75096cf535ca4ec17f9b8b9453d1647d usr/share/doc/prank/examples/sample.cdna.fasta.gz
-81d59a693bd0a0c65550bca83e40f26f usr/share/man/man1/prank.1.gz
diff --git a/debian/prank/usr/bin/prank b/debian/prank/usr/bin/prank
deleted file mode 100755
index a62bb60..0000000
Binary files a/debian/prank/usr/bin/prank and /dev/null differ
diff --git a/debian/prank/usr/share/doc/prank/changelog.Debian.gz b/debian/prank/usr/share/doc/prank/changelog.Debian.gz
deleted file mode 100644
index 437c4e9..0000000
Binary files a/debian/prank/usr/share/doc/prank/changelog.Debian.gz and /dev/null differ
diff --git a/debian/prank/usr/share/doc/prank/changelog.gz b/debian/prank/usr/share/doc/prank/changelog.gz
deleted file mode 100644
index e19ca23..0000000
Binary files a/debian/prank/usr/share/doc/prank/changelog.gz and /dev/null differ
diff --git a/debian/prank/usr/share/doc/prank/copyright b/debian/prank/usr/share/doc/prank/copyright
deleted file mode 100644
index 53d7a0b..0000000
--- a/debian/prank/usr/share/doc/prank/copyright
+++ /dev/null
@@ -1,31 +0,0 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
-Upstream-Name: prank-msa
-Upstream-Contact: Ari Loytynoja <ari.loytynoja at helsinki.fi>
-Source: http://wasabiapp.org/download/prank/
-
-Files: *
-Copyright: © 2005-2015 Ari Loytynoja <ari.loytynoja at gmail.com>
-License: GPL-2+
-
-Files: debian/*
-Copyright: © 2011 Manuel Prinz <manuel at debian.org>
- © 2013-2016 Andreas Tille <tille at debian.org>
-License: GPL-2+
-
-License: GPL-2+
- This program is free software; you can redistribute it and/or modify
- it under the terms of the GNU General Public License as published by
- the Free Software Foundation; either version 2 of the License, or
- (at your option) any later version.
- .
- This program is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- GNU General Public License for more details.
- .
- You should have received a copy of the GNU General Public License along
- with this program; if not, write to the Free Software Foundation, Inc.,
- 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
- .
- On Debian systems you can find a copy of the GPL-v2 license
- at /usr/share/common-licenses/GPL-2.
diff --git a/debian/prank/usr/share/doc/prank/examples/sample.cdna.fasta.gz b/debian/prank/usr/share/doc/prank/examples/sample.cdna.fasta.gz
deleted file mode 100644
index fd49d7e..0000000
Binary files a/debian/prank/usr/share/doc/prank/examples/sample.cdna.fasta.gz and /dev/null differ
diff --git a/debian/prank/usr/share/man/man1/prank.1.gz b/debian/prank/usr/share/man/man1/prank.1.gz
deleted file mode 100644
index fecf7ca..0000000
Binary files a/debian/prank/usr/share/man/man1/prank.1.gz and /dev/null differ
--
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