[med-svn] [shiny-server] 02/02: initial packaging

Andreas Tille tille at debian.org
Fri Mar 24 14:11:11 UTC 2017


This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository shiny-server.

commit c02c6b6e80f72a2736e23f0025c83553cbb88e0c
Author: Andreas Tille <tille at debian.org>
Date:   Fri Mar 24 15:10:27 2017 +0100

    initial packaging
---
 debian/changelog                                   |   5 +
 debian/compat                                      |   1 +
 debian/control                                     |  33 +
 debian/copyright                                   | 673 +++++++++++++++++++++
 debian/docs                                        |   2 +
 debian/install                                     |   2 +
 debian/links                                       |  11 +
 debian/linktrees                                   |   2 +
 debian/patches/series                              |   1 +
 .../use_debian_packaged_pandoc+nodejs.patch        |  51 ++
 debian/postinst                                    |  67 ++
 debian/postrm                                      |   8 +
 debian/rules                                       |  37 ++
 debian/source/format                               |   1 +
 debian/source/lintian-overrides                    |   2 +
 debian/watch                                       |   4 +
 16 files changed, 900 insertions(+)

diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..8cbad91
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+shiny-server (1.5.0.831+dfsg-1) UNRELEASED; urgency=medium
+
+  * Initial release (Closes: #???)
+
+ -- Andreas Tille <tille at debian.org>  Fri, 24 Mar 2017 12:58:02 +0100
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..74ba93c
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,33 @@
+Source: shiny-server
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: science
+Priority: optional
+Build-Depends: debhelper (>= 9),
+               cmake,
+               dh-systemd (>= 1.5),
+               python,
+               libssl-dev
+Standards-Version: 3.9.8
+Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/shiny-server.git
+Vcs-Git: https://anonscm.debian.org/git/debian-med/shiny-server.git
+Homepage: https://www.rstudio.com/products/shiny/shiny-server/
+
+Package: shiny-server
+Architecture: any
+Depends: ${shlibs:Depends},
+         ${misc:Depends},
+         nodejs,
+         npm,
+         pandoc,
+         libjs-sockjs,
+         lsb-base (>= 3.0-6)
+Description: put Shiny web apps online
+ Shiny Server lets you put shiny web applications and interactive
+ documents online. Take your Shiny apps and share them with your
+ organization or the world.
+ .
+ Shiny Server lets you go beyond static charts, and lets you manipulate
+ the data. Users can sort, filter, or change assumptions in real-time.
+ Shiny server empower your users to customize your analysis for their
+ specific needs and extract more insight from the data.
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..6634914
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,673 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: shiny-server
+Source: https://github.com/rstudio/shiny-server/releases
+Files-Excluded: */cmake-*.tar.gz
+                */sockjs-*.min.js
+
+Files: *
+Copyright: 2009-2017 RStudio, Inc
+License: AFFERO-3
+
+Files: debian/*
+Copyright: 2017 Andreas Tille <tille at debian.org>
+License: AFFERO-3
+
+License: AFFERO-3
+ Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/>
+ Everyone is permitted to copy and distribute verbatim copies
+ of this license document, but changing it is not allowed.
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+                            Preamble
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+ cooperation with the community in the case of network server software.
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+ to the third party based on the extent of your activity of conveying
+ the work, and under which the third party grants, to any of the
+ parties who would receive the covered work from you, a discriminatory
+ patent license (a) in connection with copies of the covered work
+ conveyed by you (or copies made from those copies), or (b) primarily
+ for and in connection with specific products or compilations that
+ contain the covered work, unless you entered into that arrangement,
+ or that patent license was granted, prior to 28 March 2007.
+ .
+  Nothing in this License shall be construed as excluding or limiting
+ any implied license or other defenses to infringement that may
+ otherwise be available to you under applicable patent law.
+ .
+  12. No Surrender of Others' Freedom.
+ .
+  If conditions are imposed on you (whether by court order, agreement or
+ otherwise) that contradict the conditions of this License, they do not
+ excuse you from the conditions of this License.  If you cannot convey a
+ covered work so as to satisfy simultaneously your obligations under this
+ License and any other pertinent obligations, then as a consequence you may
+ not convey it at all.  For example, if you agree to terms that obligate you
+ to collect a royalty for further conveying from those to whom you convey
+ the Program, the only way you could satisfy both those terms and this
+ License would be to refrain entirely from conveying the Program.
+ .
+  13. Remote Network Interaction; Use with the GNU General Public License.
+ .
+  Notwithstanding any other provision of this License, if you modify the
+ Program, your modified version must prominently offer all users
+ interacting with it remotely through a computer network (if your version
+ supports such interaction) an opportunity to receive the Corresponding
+ Source of your version by providing access to the Corresponding Source
+ from a network server at no charge, through some standard or customary
+ means of facilitating copying of software.  This Corresponding Source
+ shall include the Corresponding Source for any work covered by version 3
+ of the GNU General Public License that is incorporated pursuant to the
+ following paragraph.
+ .
+  Notwithstanding any other provision of this License, you have
+ permission to link or combine any covered work with a work licensed
+ under version 3 of the GNU General Public License into a single
+ combined work, and to convey the resulting work.  The terms of this
+ License will continue to apply to the part which is the covered work,
+ but the work with which it is combined will remain governed by version
+ 3 of the GNU General Public License.
+ .
+  14. Revised Versions of this License.
+ .
+  The Free Software Foundation may publish revised and/or new versions of
+ the GNU Affero General Public License from time to time.  Such new versions
+ will be similar in spirit to the present version, but may differ in detail to
+ address new problems or concerns.
+ .
+  Each version is given a distinguishing version number.  If the
+ Program specifies that a certain numbered version of the GNU Affero General
+ Public License "or any later version" applies to it, you have the
+ option of following the terms and conditions either of that numbered
+ version or of any later version published by the Free Software
+ Foundation.  If the Program does not specify a version number of the
+ GNU Affero General Public License, you may choose any version ever published
+ by the Free Software Foundation.
+ .
+  If the Program specifies that a proxy can decide which future
+ versions of the GNU Affero General Public License can be used, that proxy's
+ public statement of acceptance of a version permanently authorizes you
+ to choose that version for the Program.
+ .
+  Later license versions may give you additional or different
+ permissions.  However, no additional obligations are imposed on any
+ author or copyright holder as a result of your choosing to follow a
+ later version.
+ .
+  15. Disclaimer of Warranty.
+ .
+  THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY
+ APPLICABLE LAW.  EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT
+ HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY
+ OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO,
+ THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
+ PURPOSE.  THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM
+ IS WITH YOU.  SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF
+ ALL NECESSARY SERVICING, REPAIR OR CORRECTION.
+ .
+  16. Limitation of Liability.
+ .
+  IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
+ WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS
+ THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY
+ GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE
+ USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF
+ DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD
+ PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS),
+ EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF
+ SUCH DAMAGES.
+ .
+  17. Interpretation of Sections 15 and 16.
+ .
+  If the disclaimer of warranty and limitation of liability provided
+ above cannot be given local legal effect according to their terms,
+ reviewing courts shall apply local law that most closely approximates
+ an absolute waiver of all civil liability in connection with the
+ Program, unless a warranty or assumption of liability accompanies a
+ copy of the Program in return for a fee.
+ .
+                     END OF TERMS AND CONDITIONS
+ .
+            How to Apply These Terms to Your New Programs
+ .
+  If you develop a new program, and you want it to be of the greatest
+ possible use to the public, the best way to achieve this is to make it
+ free software which everyone can redistribute and change under these terms.
+ .
+  To do so, attach the following notices to the program.  It is safest
+ to attach them to the start of each source file to most effectively
+ state the exclusion of warranty; and each file should have at least
+ the "copyright" line and a pointer to where the full notice is found.
+ .
+    <one line to give the program's name and a brief idea of what it does.>
+    Copyright (C) <year>  <name of author>
+ .
+    This program is free software: you can redistribute it and/or modify
+    it under the terms of the GNU Affero General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+ .
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU Affero General Public License for more details.
+ .
+    You should have received a copy of the GNU Affero General Public License
+    along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ .
+ Also add information on how to contact you by electronic and paper mail.
+ .
+  If your software can interact with users remotely through a computer
+ network, you should also make sure that it provides a way for users to
+ get its source.  For example, if your program is a web application, its
+ interface could display a "Source" link that leads users to an archive
+ of the code.  There are many ways you could offer source, and different
+ solutions will be better for different programs; see section 13 for the
+ specific requirements.
+ .
+  You should also get your employer (if you work as a programmer) or school,
+ if any, to sign a "copyright disclaimer" for the program, if necessary.
+ For more information on this, and how to apply and follow the GNU AGPL, see
+ <http://www.gnu.org/licenses/>.
diff --git a/debian/docs b/debian/docs
new file mode 100644
index 0000000..508c4ec
--- /dev/null
+++ b/debian/docs
@@ -0,0 +1,2 @@
+NOTICE.md
+README.md
diff --git a/debian/install b/debian/install
new file mode 100644
index 0000000..8208452
--- /dev/null
+++ b/debian/install
@@ -0,0 +1,2 @@
+config/init.d/debian/*				etc/init.d
+config/*.config					etc/shiny-server
diff --git a/debian/links b/debian/links
new file mode 100644
index 0000000..b8025f6
--- /dev/null
+++ b/debian/links
@@ -0,0 +1,11 @@
+etc/shiny-server/default.config			usr/lib/shiny-server/config/default.config
+etc/shiny-server/default.config			etc/shiny-server/shiny-server.conf
+etc/shiny-server/multi-server.config		usr/lib/shiny-server/config/multi-server.config
+etc/shiny-server/shiny-server-rules.config	usr/lib/shiny-server/config/shiny-server-rules.config
+etc/shiny-server/user-dirs.config		usr/lib/shiny-server/config/user-dirs.config
+usr/lib/shiny-server/shiny-server		usr/bin/shiny-server
+usr/bin/nodejs					usr/lib/shiny-server/bin/node
+usr/bin/npm					usr/lib/shiny-server/bin/npm
+usr/share/javascript/sockjs/sockjs.min.js	usr/lib/shiny-server/assets/sockjs-0.3.4.min.js
+usr/lib/shiny-server/manual.test		usr/share/doc/shiny-server/manual.test
+usr/lib/shiny-server/samples			usr/share/doc/shiny-server/examples
diff --git a/debian/linktrees b/debian/linktrees
new file mode 100644
index 0000000..081e355
--- /dev/null
+++ b/debian/linktrees
@@ -0,0 +1,2 @@
+# Not used since minimized source is deleted
+# replace usr/share/javascript/sockjs/sockjs.min.js	usr/lib/shiny-server/assets/sockjs-0.3.4.min.js
diff --git a/debian/patches/series b/debian/patches/series
new file mode 100644
index 0000000..1ff326f
--- /dev/null
+++ b/debian/patches/series
@@ -0,0 +1 @@
+use_debian_packaged_pandoc+nodejs.patch
diff --git a/debian/patches/use_debian_packaged_pandoc+nodejs.patch b/debian/patches/use_debian_packaged_pandoc+nodejs.patch
new file mode 100644
index 0000000..597977f
--- /dev/null
+++ b/debian/patches/use_debian_packaged_pandoc+nodejs.patch
@@ -0,0 +1,51 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Fri, 24 Mar 2017 12:58:02 +0100
+Description: Use Debian packages nodejs, npm and pandoc
+
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -33,17 +33,13 @@ execute_process(COMMAND echo "${CPACK_PA
+                 OUTPUT_FILE "${CMAKE_CURRENT_BINARY_DIR}/VERSION")
+ 
+ add_subdirectory(src)
+-add_subdirectory(external/node)
+-add_subdirectory(external/pandoc)
+ 
+ install(DIRECTORY assets
+                   samples                  
+                   build
+                   config
+-                  ext
+                   lib
+                   manual.test
+-                  node_modules
+                   R
+                   scripts
+                   templates
+--- a/lib/main.js
++++ b/lib/main.js
+@@ -1,4 +1,4 @@
+-#!/usr/bin/env node
++#!/usr/bin/nodejs
+ /*
+  * main.js
+  *
+--- a/tools/makedocs.js
++++ b/tools/makedocs.js
+@@ -1,4 +1,4 @@
+-#!/usr/bin/env node
++#!/usr/bin/nodejs
+ 
+ /*
+  * makedocs.js
+--- a/lib/worker/app-worker.js
++++ b/lib/worker/app-worker.js
+@@ -336,7 +336,7 @@ var AppWorker = function(appSpec, endpoi
+         SHINY_SERVER_VERSION + '\n' +
+         workerId + '\n' +
+         mode + '\n' +
+-        paths.projectFile('ext/pandoc') + '\n' +
++        paths.projectFile('/usr/bin/pandoc') + '\n' +
+         logFile + '\n' +
+         appSpec.settings.appDefaults.disableProtocols.join(",") + '\n' +
+         appSpec.settings.appDefaults.reconnect + '\n' +
diff --git a/debian/postinst b/debian/postinst
new file mode 100755
index 0000000..f2a6493
--- /dev/null
+++ b/debian/postinst
@@ -0,0 +1,67 @@
+#!/bin/sh
+
+# errors shouldn't cause script to exit
+set -e
+
+SHINYHOME=/home/shiny
+SHINYSRV=/var/lib/shiny-server
+
+ln -f -s "/usr/lib/shiny-server/bin/shiny-server" /usr/bin/shiny-server
+# See if "shiny" user exists
+if id -u shiny >/dev/null 2>&1;
+then
+   echo "User 'shiny' already exists. Ensuring proper permissions on $SHINYHOME."
+   mkdir -p $SHINYHOME
+   chown shiny:shiny $SHINYHOME
+else
+   echo Creating user "shiny"
+   useradd --system --create-home --home-dir $SHINYHOME shiny
+fi
+
+if [ ! -d "$SHINYSRV" ];
+then
+   mkdir -p $SHINYSRV
+   # And seed with initial apps and index.html
+   ln -s /usr/lib/shiny-server/samples/welcome.html $SHINYSRV/index.html
+   ln -s /usr/lib/shiny-server/samples/sample-apps $SHINYSRV/sample-apps
+fi
+
+mkdir -p /var/log/shiny-server
+
+# Log dir must be writable by "shiny" user
+chown shiny:shiny /var/log/shiny-server
+
+# check lsb release
+LSB_RELEASE=`lsb_release --id --short`
+
+# # add apparmor profile
+# if test $LSB_RELEASE = "Ubuntu" && test -d /etc/apparmor.d/
+# then
+#    cp /usr/lib/extras/apparmor/rstudio-server /etc/apparmor.d/
+#    apparmor_parser -r /etc/apparmor.d/rstudio-server 2>/dev/null
+# fi
+
+# Ubuntu needs help setting LANG which we'll do in the Upstart script by 
+# injecting it into the script here.
+if [ -e /etc/default/locale ]; then
+   . /etc/default/locale
+fi
+ if [ $LANG ] && [ "$LANG" != "C" ]; then
+   # $LANG exists and is set. Just use it
+   SS_LANG=$LANG
+else 
+   # $LANG is not set, we need to infer it.
+   if (locale -a | grep -e '^C.UTF-8$' > /dev/null); then
+      # We have C.UTF-8, use it.
+      SS_LANG="C.UTF-8"
+   else 
+      SS_LANG="en_US.UTF-8"
+   fi
+fi
+
+if ! grep -e "^Environment=\"LANG=" /etc/systemd/system/shiny-server.service; then
+  echo "Adding LANG to /etc/systemd/system/shiny-server.service, setting to $SS_LANG"
+  sed -i "11 a Environment=\"LANG=$SS_LANG\"" /etc/systemd/system/shiny-server.service
+fi
+
+#DEBHELPER#
diff --git a/debian/postrm b/debian/postrm
new file mode 100755
index 0000000..f0f840a
--- /dev/null
+++ b/debian/postrm
@@ -0,0 +1,8 @@
+#!/bin/sh
+
+set -e
+
+# remove temporary sockets
+rm -rf /var/shiny-server/sockets
+
+#DEBHELPER#
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..86dd4e9
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,37 @@
+#!/usr/bin/make -f
+
+DEBPKGNAME     := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')
+
+CMAKE_EXTRA_FLAGS = \
+	-DCMAKE_INSTALL_PREFIX=/usr/lib \
+	-DPYTHON="/usr/bin/python"
+
+export DEB_BUILD_MAINT_OPTIONS = hardening=+all
+
+%:
+	dh $@ --with systemd
+
+override_dh_auto_configure:
+	dh_auto_configure -- $(CMAKE_EXTRA_FLAGS)
+	ln -s obj-$(DEB_BUILD_GNU_TYPE) build
+
+override_dh_install:
+	dh_install
+	mkdir -p debian/$(DEBPKGNAME)/etc/logrotate.d
+	cp -a config/logrotate debian/$(DEBPKGNAME)/etc/logrotate.d/shiny-server
+	mkdir -p debian/$(DEBPKGNAME)/lib/systemd/system
+	cp -a config/systemd/shiny-server.debian.service debian/$(DEBPKGNAME)/lib/systemd/system/shiny-server.service
+	find debian/$(DEBPKGNAME) -name COPYING -delete
+	find debian/$(DEBPKGNAME) -name GIT_VERSION -delete
+	find debian/$(DEBPKGNAME) -name build -type l -delete
+	rm -rf debian/$(DEBPKGNAME)/usr/lib/shiny-server/config/*
+	rm -rf debian/$(DEBPKGNAME)/usr/lib/shiny-server/scripts
+
+override_dh_installchangelogs:
+	dh_installchangelogs NEWS
+
+override_dh_fixperms:
+	dh_fixperms
+	chmod +x debian/$(DEBPKGNAME)/usr/lib/shiny-server/tools/makedocs.js
+	chmod +x debian/$(DEBPKGNAME)/usr/lib/shiny-server/lib/main.js
+	find debian/$(DEBPKGNAME) -name "*.Rmd" -exec chmod -x \{\} \;
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/source/lintian-overrides b/debian/source/lintian-overrides
new file mode 100644
index 0000000..f058a1b
--- /dev/null
+++ b/debian/source/lintian-overrides
@@ -0,0 +1,2 @@
+# This is really human readable source
+shiny-server source: source-is-missing manual.test/loadtest-xhr.js line length is 665 characters (>512)
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..14edf69
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,4 @@
+version=4
+
+opts="repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,repack,compression=xz" \
+  https://github.com/rstudio/shiny-server/releases .*/archive/v([\d\.]+)\.tar\.gz

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