[med-svn] [mapdamage] 02/03: Add information how to check R libraries and what to do in case of errors

[Nadiya Sitdykova]

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rovenskasa-guest pushed a commit to branch master
in repository mapdamage.

commit b6987b651006740ad6ddecd761b16ba12afc8448
Author: Nadiya Sitdykova <rovenskasa at gmail.com>
Date:   Wed Mar 29 21:10:09 2017 -0400

    Add information how to check R libraries and what to do in case of errors
---
 debian/README.test | 17 +++++++++++++++++
 debian/changelog   |  1 +
 debian/docs        |  1 +
 3 files changed, 19 insertions(+)

diff --git a/debian/README.test b/debian/README.test
index 39fbde9..dc1cae5 100644
--- a/debian/README.test
+++ b/debian/README.test
@@ -6,3 +6,20 @@ This package can be tested by executing
     sh run-unit-test
 
 in order to confirm its integrity.
+
+You can check if all needed R libraries are installed 
+by executing
+    
+    sh run-r-packages-check
+
+
+
+If you have errors, please:
+
+1. Check if all needed R libraries are installed
+2. If you have error "The ACGT frequencies must be in the 
+range 0 to 1", check your reference. It should contain at
+least one nucleotide of each type -- it's one of program's 
+resctrictions
+3. For other errors you can try read  documentation 
+http://ginolhac.github.io/mapDamage/
diff --git a/debian/changelog b/debian/changelog
index 58e6ed5..5f33eed 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -21,6 +21,7 @@ mapdamage (2.0.6+dfsg-2) UNRELEASED; urgency=medium
   * Add patch to fix quantile call to remove NA and NaNs
   * Add dependency providing liblapack.so and libblas.so
   * Add file with reference containing all types of nucleotides
+  * Add information how to check R libraries and what to do in case of errors to README.test
 
  -- rovenskasa-guest <rovenskasa at gmail.com>  Thu, 23 Mar 2017 21:34:41 -0700
 
diff --git a/debian/docs b/debian/docs
index 1baa3d3..2952b28 100644
--- a/debian/docs
+++ b/debian/docs
@@ -1,3 +1,4 @@
 debian/README.test
 debian/tests/run-unit-test
+debina/tests/run-r-packages-check
 debian/tests/ref_T.fa

-- 
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