[med-svn] [mapdamage] 01/04: minimize debdiff by `quilt refresh`

[Andreas Tille]

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tille pushed a commit to branch master
in repository mapdamage.

commit f71c87fd0ffaab11de42a2a642757667e577ebe5
Author: Andreas Tille <tille at debian.org>
Date:   Thu Mar 30 09:44:14 2017 +0200

    minimize debdiff by `quilt refresh`
---
 debian/patches/use_debian_packaged_seqtk.patch | 28 ++++++++++----------------
 1 file changed, 11 insertions(+), 17 deletions(-)

diff --git a/debian/patches/use_debian_packaged_seqtk.patch b/debian/patches/use_debian_packaged_seqtk.patch
index ce7658d..2ce4020 100644
--- a/debian/patches/use_debian_packaged_seqtk.patch
+++ b/debian/patches/use_debian_packaged_seqtk.patch
@@ -2,11 +2,9 @@ Author: Andreas Tille <tille at debian.org>
 Last-Update: Thu, 28 Jul 2016 15:13:14 +0200
 Description: Use Debian packaged seqtk
 
-Index: mapdamage/setup.py
-===================================================================
---- mapdamage.orig/setup.py	2017-03-25 21:05:13.530450881 -0400
-+++ mapdamage/setup.py	2017-03-25 21:48:04.000000000 -0400
-@@ -6,21 +6,6 @@
+--- a/setup.py
++++ b/setup.py
+@@ -6,21 +6,6 @@ from distutils.command.install import in
  import os
  import subprocess
  
@@ -28,7 +26,7 @@ Index: mapdamage/setup.py
  def setup_version():
      if not os.path.exists(".git"):
          # Release version, no .git folder
-@@ -40,16 +25,7 @@
+@@ -40,16 +25,7 @@ class compileInstall(DistutilsInstall):
      def run(self):
          self.record=""
          setup_version()
@@ -45,7 +43,7 @@ Index: mapdamage/setup.py
  
  
  setup(
-@@ -59,7 +35,7 @@
+@@ -59,7 +35,7 @@ setup(
      author='Aurélien Ginolhac, Mikkel Schubert, Hákon Jónsson',
      author_email='MSchubert at snm.ku.dk, jonsson.hakon at gmail.com',
      packages=['mapdamage'],
@@ -54,11 +52,9 @@ Index: mapdamage/setup.py
      scripts=['bin/mapDamage'],
      url='https://github.com/ginolhac/mapDamage',
      license='LICENSE.txt',
-Index: mapdamage/bin/mapDamage
-===================================================================
---- mapdamage.orig/bin/mapDamage	2017-03-25 21:05:13.518450694 -0400
-+++ mapdamage/bin/mapDamage	2017-03-25 21:48:04.000000000 -0400
-@@ -151,7 +151,7 @@
+--- a/bin/mapDamage
++++ b/bin/mapDamage
+@@ -151,7 +151,7 @@ def main():
          sys.path.insert(0,path_to_mm)
      import mapdamage
  
@@ -67,11 +63,9 @@ Index: mapdamage/bin/mapDamage
      if not (os.path.isfile(fpath_seqtk) and os.access(fpath_seqtk, os.X_OK)):
          sys.stderr.write("Seqtk executable not accessible; mapDamage has not\n"
                           "been intalled properly or current user does not\n"
-Index: mapdamage/mapdamage/composition.py
-===================================================================
---- mapdamage.orig/mapdamage/composition.py	2017-03-25 21:05:13.530450881 -0400
-+++ mapdamage/mapdamage/composition.py	2017-03-25 22:10:29.760815637 -0400
-@@ -35,7 +35,7 @@
+--- a/mapdamage/composition.py
++++ b/mapdamage/composition.py
+@@ -35,7 +35,7 @@ def get_base_comp(filename,destination=F
      Gets the basecomposition of all the sequences in filename
      and returns the value to destination if given.
      """

-- 
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