[med-svn] [psortb] 02/06: New upstream version 3.0.4+dfsg
Andreas Tille
tille at debian.org
Wed May 3 14:57:58 UTC 2017
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tille pushed a commit to branch master
in repository psortb.
commit da93b6b661a1ffb983748ff57a5485a5b1dbe53e
Author: Andreas Tille <tille at debian.org>
Date: Sun Apr 30 13:49:06 2017 +0200
New upstream version 3.0.4+dfsg
---
algorithm-hmm/src/include/stockholm.h | 51 -----------------------------------
algorithm-hmm/src/include/version.h | 6 -----
2 files changed, 57 deletions(-)
diff --git a/algorithm-hmm/src/include/stockholm.h b/algorithm-hmm/src/include/stockholm.h
deleted file mode 100644
index a9cae55..0000000
--- a/algorithm-hmm/src/include/stockholm.h
+++ /dev/null
@@ -1,51 +0,0 @@
-#ifndef STOCKHOLM_H_INCLUDED
-#define STOCKHOLM_H_INCLUDED
-
-#include "gki.h"
-
-typedef struct {
- int *linetype; /* e.g. STOCKHOLM_GF_LINE; always valid */
- int *featurecode; /* all markup codes: e.g. STOCKHOLM_GF_ID;
- nonmarkup: always set to STOCKHOLM_UNPARSED */
- char **featurename; /* all unparsed markup codes: string, e.g. "ID";
- all other lines: NULL */
- int *seqidx; /* all GS, GR, GC, sequence lines: which sequence;
- other lines: 0 */
- int *len; /* all GR, GC, sequence lines: length of text field;
- other lines: 0 */
- char **text; /* all unparsed nonblank lines: rest of data
- other lines: NULL */
- int nseqalloc; /* current nseqs allocated for in aseqs and ainfo */
- int nlines; /* number of lines in this skel */
- int nlinealloc; /* current # of lines allocated for in this skel */
- int overall_line; /* line # in file (important in files w/ >1 ali)*/
-} alifile_skeleton;
-
-#define STOCKHOLM_GF_LINE 0
-#define STOCKHOLM_GS_LINE 1
-#define STOCKHOLM_GC_LINE 2
-#define STOCKHOLM_GR_LINE 3
-#define STOCKHOLM_SEQ_LINE 4
-#define STOCKHOLM_BLANK_LINE 5
-#define STOCKHOLM_COMMENT_LINE 6
-
-#define STOCKHOLM_UNPARSED 0
-#define STOCKHOLM_GF_ID 1
-#define STOCKHOLM_GF_AC 2
-#define STOCKHOLM_GF_DE 3
-#define STOCKHOLM_GF_AU 4
-#define STOCKHOLM_GF_GA 5
-#define STOCKHOLM_GF_NC 6
-#define STOCKHOLM_GF_TC 7
-#define STOCKHOLM_GS_WT 100
-#define STOCKHOLM_GS_AC 101
-#define STOCKHOLM_GS_DE 102
-#define STOCKHOLM_GC_CS 200
-#define STOCKHOLM_GC_RF 201
-#define STOCKHOLM_GR_SS 300
-#define STOCKHOLM_GR_SA 301
-
-#define SKEL_NSEQLUMP 10 /* allocate for new seqs in blocks of this size */
-#define SKEL_LUMPSIZE 100 /* allocate for new lines in skel in blocks of this size */
-
-#endif /*STOCKHOLM_H_INCLUDED*/
diff --git a/algorithm-hmm/src/include/version.h b/algorithm-hmm/src/include/version.h
deleted file mode 100644
index 68e87c3..0000000
--- a/algorithm-hmm/src/include/version.h
+++ /dev/null
@@ -1,6 +0,0 @@
-/* version.h -- automatically generated by a Makefile. DO NOT EDIT. */
-#define PACKAGE "HMMER"
-#define RELEASE "2.2g"
-#define RELEASEDATE "August 2001"
-#define COPYRIGHT "Copyright (C) 1992-2001 HHMI/Washington University School of Medicine"
-#define LICENSE "Freely distributed under the GNU General Public License (GPL)"
--
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