[med-svn] [psortb] 02/06: New upstream version 3.0.4+dfsg

[Andreas Tille]

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tille pushed a commit to branch master
in repository psortb.

commit da93b6b661a1ffb983748ff57a5485a5b1dbe53e
Author: Andreas Tille <tille at debian.org>
Date:   Sun Apr 30 13:49:06 2017 +0200

    New upstream version 3.0.4+dfsg
---
 algorithm-hmm/src/include/stockholm.h | 51 -----------------------------------
 algorithm-hmm/src/include/version.h   |  6 -----
 2 files changed, 57 deletions(-)

diff --git a/algorithm-hmm/src/include/stockholm.h b/algorithm-hmm/src/include/stockholm.h
deleted file mode 100644
index a9cae55..0000000
--- a/algorithm-hmm/src/include/stockholm.h
+++ /dev/null
@@ -1,51 +0,0 @@
-#ifndef STOCKHOLM_H_INCLUDED
-#define STOCKHOLM_H_INCLUDED
-
-#include "gki.h"
-
-typedef struct {
-  int   *linetype;		/* e.g. STOCKHOLM_GF_LINE; always valid */
-  int   *featurecode;		/* all markup codes: e.g. STOCKHOLM_GF_ID; 
-				   nonmarkup: always set to STOCKHOLM_UNPARSED */
-  char **featurename;		/* all unparsed markup codes: string, e.g. "ID";
-				   all other lines: NULL */
-  int   *seqidx;		/* all GS, GR, GC, sequence lines: which sequence;
-				   other lines: 0 */
-  int   *len;			/* all GR, GC, sequence lines: length of text field;
-				   other lines: 0 */
-  char **text;			/* all unparsed nonblank lines: rest of data
-				   other lines: NULL */
-  int    nseqalloc;		/* current nseqs allocated for in aseqs and ainfo */
-  int    nlines;		/* number of lines in this skel */
-  int    nlinealloc;		/* current # of lines allocated for in this skel */
-  int    overall_line;		/* line # in file (important in files w/ >1 ali)*/
-} alifile_skeleton;
-
-#define STOCKHOLM_GF_LINE      0
-#define STOCKHOLM_GS_LINE      1 
-#define STOCKHOLM_GC_LINE      2
-#define STOCKHOLM_GR_LINE      3
-#define STOCKHOLM_SEQ_LINE     4
-#define STOCKHOLM_BLANK_LINE   5
-#define STOCKHOLM_COMMENT_LINE 6
-
-#define STOCKHOLM_UNPARSED  0
-#define STOCKHOLM_GF_ID     1
-#define STOCKHOLM_GF_AC     2
-#define STOCKHOLM_GF_DE     3
-#define STOCKHOLM_GF_AU     4
-#define STOCKHOLM_GF_GA     5
-#define STOCKHOLM_GF_NC     6
-#define STOCKHOLM_GF_TC     7
-#define STOCKHOLM_GS_WT     100
-#define STOCKHOLM_GS_AC     101
-#define STOCKHOLM_GS_DE     102
-#define STOCKHOLM_GC_CS     200
-#define STOCKHOLM_GC_RF     201
-#define STOCKHOLM_GR_SS     300
-#define STOCKHOLM_GR_SA     301
-
-#define SKEL_NSEQLUMP       10	   /* allocate for new seqs in blocks of this size */
-#define SKEL_LUMPSIZE       100	   /* allocate for new lines in skel in blocks of this size */
-
-#endif /*STOCKHOLM_H_INCLUDED*/
diff --git a/algorithm-hmm/src/include/version.h b/algorithm-hmm/src/include/version.h
deleted file mode 100644
index 68e87c3..0000000
--- a/algorithm-hmm/src/include/version.h
+++ /dev/null
@@ -1,6 +0,0 @@
-/* version.h -- automatically generated by a Makefile. DO NOT EDIT. */
-#define PACKAGE     "HMMER"
-#define RELEASE     "2.2g"
-#define RELEASEDATE "August 2001"
-#define COPYRIGHT   "Copyright (C) 1992-2001 HHMI/Washington University School of Medicine"
-#define LICENSE     "Freely distributed under the GNU General Public License (GPL)"

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