[med-svn] [dcm2niix] branch upstream/latest updated (82ca9e9 -> 9e8d453)

[Ghislain Vaillant]

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ghisvail-guest pushed a change to branch upstream/latest
in repository dcm2niix.

      from  82ca9e9   New upstream version 1.0.20161101
       new  9e8d453   New upstream version 1.0.20170429

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
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Summary of changes:
 .gitignore                         |    3 +
 .travis.yml                        |   33 +-
 CMakeLists.txt                     |   38 +-
 README.md => COMPILE.md            |  164 +----
 Dockerfile                         |   16 +
 README.md                          |  192 ++----
 SuperBuild/External-OPENJPEG.cmake |   15 +
 SuperBuild/External-YAML-CPP.cmake |   15 +
 SuperBuild/SuperBuild.cmake        |  111 ++++
 appveyor.yml                       |   32 +-
 console/CMakeLists.txt             |  169 +++--
 console/jpg_0XC3.cpp               |   78 ++-
 console/main_console.cpp           |   84 ++-
 console/main_console_batch.cpp     |  107 ++-
 console/makefile                   |    2 +-
 console/nifti1_io_core.cpp         |   28 +-
 console/nifti1_io_core.h           |    7 +
 console/nii_dicom.cpp              | 1191 ++++++++++++++++++---------------
 console/nii_dicom.h                |   58 +-
 console/nii_dicom_batch.cpp        | 1273 ++++++++++++++++++++----------------
 console/nii_dicom_batch.h          |   25 +-
 console/nii_foreign.cpp            |  404 ++++++++++++
 console/nii_foreign.h              |   19 +
 console/nii_ortho.cpp              |   16 +-
 console/nii_ortho.h                |    3 +
 console/print.h                    |   45 ++
 ucm.cmake => console/ucm.cmake     | 1245 ++++++++++++++++++-----------------
 console/ujpeg.cpp                  |  290 +++++++-
 console/ujpeg.h                    |    8 -
 docs/CMakeLists.txt                |   36 +
 docs/source/conf.py                |  340 ++++++++++
 docs/source/dcm2niibatch.rst       |   81 +++
 docs/source/dcm2niix.rst           |   73 +++
 docs/source/index.rst              |   22 +
 license.txt                        |    4 +-
 35 files changed, 3964 insertions(+), 2263 deletions(-)
 copy README.md => COMPILE.md (50%)
 create mode 100644 Dockerfile
 create mode 100644 SuperBuild/External-OPENJPEG.cmake
 create mode 100644 SuperBuild/External-YAML-CPP.cmake
 create mode 100644 SuperBuild/SuperBuild.cmake
 mode change 100644 => 100755 console/makefile
 create mode 100644 console/nii_foreign.cpp
 create mode 100644 console/nii_foreign.h
 create mode 100755 console/print.h
 rename ucm.cmake => console/ucm.cmake (82%)
 create mode 100644 docs/CMakeLists.txt
 create mode 100644 docs/source/conf.py
 create mode 100644 docs/source/dcm2niibatch.rst
 create mode 100644 docs/source/dcm2niix.rst
 create mode 100644 docs/source/index.rst

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