[med-svn] [bowtie2] 02/06: Merge tag 'upstream/2.3.2'
Alex Mestiashvili
malex-guest at moszumanska.debian.org
Wed May 24 20:33:28 UTC 2017
This is an automated email from the git hooks/post-receive script.
malex-guest pushed a commit to branch master
in repository bowtie2.
commit f6dc0b12e37dffb374a5e5b1c775208776a29bb7
Merge: 3a13568 36f3b27
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date: Wed May 24 09:47:01 2017 +0200
Merge tag 'upstream/2.3.2'
Upstream version 2.3.2
.travis.yml | 1 +
MANUAL | 58 +-
MANUAL.markdown | 58 +-
Makefile | 4 +-
NEWS | 23 +-
VERSION | 2 +-
aligner_bt.cpp | 6 +-
aligner_result.cpp | 46 +-
aligner_result.h | 299 +++++----
aligner_seed.cpp | 5 +-
aligner_seed.h | 30 +-
aligner_seed2.h | 2 +
aligner_sw.cpp | 9 +-
aligner_sw_driver.cpp | 9 +-
aligner_swsse_ee_i16.cpp | 2 +
aligner_swsse_ee_u8.cpp | 2 +
aligner_swsse_loc_i16.cpp | 2 +
aligner_swsse_loc_u8.cpp | 2 +
aln_sink.cpp | 255 +++++++-
aln_sink.h | 19 +-
bowtie2 | 4 +-
bowtie_main.cpp | 241 +------
bt2_search.cpp | 59 +-
doc/manual.html | 54 +-
doc/website/manual.ssi | 1480 +++++++++++++++++++++++-------------------
doc/website/recent_news.ssi | 11 +
doc/website/rhsidebar.ssi | 4 +-
pat.cpp | 18 +-
read.h | 12 +-
sam.cpp | 132 ++--
scripts/test/simple_tests.pl | 14 +-
unique.h | 26 +-
32 files changed, 1624 insertions(+), 1265 deletions(-)
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/bowtie2.git
More information about the debian-med-commit
mailing list