[med-svn] [bowtie2] 04/06: Refresh patches

[Alex Mestiashvili]

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malex-guest pushed a commit to branch master
in repository bowtie2.

commit 213d975477041aa94c6e86a5639d3a511930f9a5
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date:   Wed May 24 10:33:06 2017 +0200

    Refresh patches
---
 debian/patches/reproducible.patch                                     | 2 +-
 debian/patches/skip_test_requiring_non-free_libmath-random-perl.patch | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/debian/patches/reproducible.patch b/debian/patches/reproducible.patch
index 3beda9d..8dafbda 100644
--- a/debian/patches/reproducible.patch
+++ b/debian/patches/reproducible.patch
@@ -129,7 +129,7 @@ Author: Sascha Steinbiss <sascha at steinbiss.name>
  
 --- bowtie2.orig/bt2_search.cpp
 +++ bowtie2/bt2_search.cpp
-@@ -4658,15 +4658,15 @@
+@@ -4697,15 +4697,15 @@
  			} else {
  				cout << "Neither 32- nor 64-bit: sizeof(void*) = " << sizeof(void*) << endl;
  			}
diff --git a/debian/patches/skip_test_requiring_non-free_libmath-random-perl.patch b/debian/patches/skip_test_requiring_non-free_libmath-random-perl.patch
index 23e95f7..43928ae 100644
--- a/debian/patches/skip_test_requiring_non-free_libmath-random-perl.patch
+++ b/debian/patches/skip_test_requiring_non-free_libmath-random-perl.patch
@@ -187,7 +187,7 @@ Description: Math::Random is in package libmath-random-perl which is
  		mkdir .perllib.tmp ; \
  		$$DL http://cpanmin.us | perl - -l $(CURDIR)/.perllib.tmp App::cpanminus local::lib ; \
  		eval `perl -I $(CURDIR)/.perllib.tmp/lib/perl5 -Mlocal::lib=$(CURDIR)/.perllib.tmp` ; \
--		cpanm Math::Random Clone Test::Deep Sys::Info ; \
+-		cpanm --force Math::Random Clone Test::Deep Sys::Info ; \
  	fi
  
  .PHONY: test

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