[med-svn] r23772 - in trunk/packages/R/r-bioc-shortread/trunk/debian: . patches

[Graham Inggs]

Author: ginggs
Date: 2017-05-29 13:51:08 +0000 (Mon, 29 May 2017)
New Revision: 23772

Modified:
   trunk/packages/R/r-bioc-shortread/trunk/debian/changelog
   trunk/packages/R/r-bioc-shortread/trunk/debian/control
   trunk/packages/R/r-bioc-shortread/trunk/debian/patches/use_debian_packaged_zlib.patch
Log:
New upstream version, refresh patches, update Build-Depends, upload to unstable

Modified: trunk/packages/R/r-bioc-shortread/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-shortread/trunk/debian/changelog	2017-05-29 13:01:41 UTC (rev 23771)
+++ trunk/packages/R/r-bioc-shortread/trunk/debian/changelog	2017-05-29 13:51:08 UTC (rev 23772)
@@ -1,3 +1,11 @@
+r-bioc-shortread (1.34.0-1) unstable; urgency=medium
+
+  * Team upload
+  * New upstream version
+  * Add Build-Depends: r-bioc-rsamtools (>= 1.28.0)
+
+ -- Graham Inggs <ginggs at debian.org>  Mon, 29 May 2017 15:13:59 +0200
+
 r-bioc-shortread (1.32.0-1) unstable; urgency=medium
 
   * New upstream version

Modified: trunk/packages/R/r-bioc-shortread/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-shortread/trunk/debian/control	2017-05-29 13:01:41 UTC (rev 23771)
+++ trunk/packages/R/r-bioc-shortread/trunk/debian/control	2017-05-29 13:51:08 UTC (rev 23772)
@@ -6,10 +6,11 @@
 Build-Depends: debhelper (>= 9),
                dh-r,
                r-base-dev,
-               r-cran-latticeextra,
                r-bioc-biobase (>= 2.26.0),
                r-bioc-genomicalignments (>= 1.8.0),
-               r-cran-hwriter
+               r-bioc-rsamtools (>= 1.28.0),
+               r-cran-hwriter,
+               r-cran-latticeextra
 Standards-Version: 3.9.8
 Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-shortread/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-shortread/trunk/

Modified: trunk/packages/R/r-bioc-shortread/trunk/debian/patches/use_debian_packaged_zlib.patch
===================================================================
--- trunk/packages/R/r-bioc-shortread/trunk/debian/patches/use_debian_packaged_zlib.patch	2017-05-29 13:01:41 UTC (rev 23771)
+++ trunk/packages/R/r-bioc-shortread/trunk/debian/patches/use_debian_packaged_zlib.patch	2017-05-29 13:51:08 UTC (rev 23772)
@@ -16,9 +16,9 @@
  
 --- a/DESCRIPTION
 +++ b/DESCRIPTION
-@@ -18,7 +18,7 @@ Depends: BiocGenerics (>= 0.11.3), BiocP
+@@ -18,7 +18,7 @@
          2.37.1), Rsamtools (>= 1.21.4), GenomicAlignments (>= 1.5.4)
- Imports: Biobase, S4Vectors (>= 0.7.1), IRanges (>= 2.3.7),
+ Imports: Biobase, S4Vectors (>= 0.13.8), IRanges (>= 2.3.7),
          GenomeInfoDb (>= 1.1.19), GenomicRanges (>= 1.21.6), hwriter,
 -        methods, zlibbioc, lattice, latticeExtra,
 +        methods, lattice, latticeExtra,