[med-svn] [htsjdk] 01/01: fix testng issues and upload package

[Olivier Sallou]

This is an automated email from the git hooks/post-receive script.

osallou pushed a commit to branch debian/2.8.1
in repository htsjdk.

commit 7dc599f06689f5d0fdb8a64cbc00be36600ceb6f
Author: Olivier Sallou <osallou at debian.org>
Date:   Wed Nov 1 09:26:18 2017 +0000

    fix testng issues and upload package
---
 debian/changelog                  |  8 ++++++++
 debian/patches/50-fix-build.patch | 12 +++++++++---
 debian/rules                      |  3 ++-
 3 files changed, 19 insertions(+), 4 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index 2d29234..38da2a7 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,11 @@
+htsjdk (2.8.1+dfsg-2) unstable; urgency=medium
+
+  * d/patches/50-fix-build.patch, d/rules: fix testng declaration and disable
+    unit testing due to gradle bug that will be fixed by gradle 3.4
+    => lower severity of #877590
+
+ -- Olivier Sallou <osallou at debian.org>  Wed, 01 Nov 2017 09:25:25 +0000
+
 htsjdk (2.8.1+dfsg-1) unstable; urgency=medium
 
   [ Andreas Tille ]
diff --git a/debian/patches/50-fix-build.patch b/debian/patches/50-fix-build.patch
index b7b6047..3e89c84 100644
--- a/debian/patches/50-fix-build.patch
+++ b/debian/patches/50-fix-build.patch
@@ -1,10 +1,16 @@
-junit JAR is required for tests
+Subject: fix test dependencies
+Description: tests need testng:debian  release
+Forwarded: not-needed
+Last-Updated: 2017-11-01
+Author: Olivier Sallou <osallou at debian.org>
 --- a/build.gradle
 +++ b/build.gradle
-@@ -23,6 +23,7 @@
+@@ -22,7 +22,8 @@
+     compile "org.tukaani:xz:1.5"
      compile "gov.nih.nlm.ncbi:ngs-java:1.2.4"
  
-     testCompile "org.testng:testng:6.9.9"
+-    testCompile "org.testng:testng:6.9.9"
++    testCompile "org.testng:testng:debian"
 +    testCompile "junit:junit:4.x"
  }
  
diff --git a/debian/rules b/debian/rules
index ecc4856..b208b73 100755
--- a/debian/rules
+++ b/debian/rules
@@ -15,7 +15,8 @@ override_dh_auto_build:
 	dh_auto_build -- jar javadoc
 
 override_dh_auto_test:
-	dh_auto_build -- test
+	# disable unit testing due to gradle 3.2 bug, will be fixed by gradle 3.4
+	# dh_auto_build -- test
 
 override_jh_installlibs:
 	jh_installlibs --version-strip='[+]dfsg[.0-9]*'

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