[med-svn] [gmap] branch master updated (bbe4a65 -> 5ab2c83)

[Alex Mestiashvili]

This is an automated email from the git hooks/post-receive script.

malex-guest pushed a change to branch master
in repository gmap.

      from  bbe4a65   Update changelog, upload to unstable
       new  deec570   New upstream version 2017-10-30
       new  3dff4ee   Update upstream source from tag 'upstream/2017-10-30'
       new  2208ff7   Simplify d/rules
       new  e8587d5   Update symbols file
       new  5ab2c83   Update changelo, upload to unstable

The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 ChangeLog               |   39 ++
 VERSION                 |    2 +-
 configure               |   24 +-
 debian/changelog        |    8 +
 debian/libgmap1.symbols | 1212 +++++++++++++++++++++++-----------------------
 debian/rules            |    5 +-
 src/cigar.c             |   11 +-
 src/cigar.h             |    4 +-
 src/get-genome.c        |   95 +++-
 src/gmap.c              |    2 +-
 src/gsnap.c             |    4 +-
 src/pairpool.c          |   22 +-
 src/sarray-search.c     |   51 +-
 src/stage3.c            | 1234 +++++++++++++++++++++++++++++++++++++----------
 src/stage3hr.c          |    7 +-
 src/substring.c         |   62 ++-
 16 files changed, 1837 insertions(+), 945 deletions(-)

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/gmap.git