[med-svn] [gmap] 02/05: Update upstream source from tag 'upstream/2017-10-30'

[Alex Mestiashvili]

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malex-guest pushed a commit to branch master
in repository gmap.

commit 3dff4ee7e44f6286bc09e336e2c3b0443a9ec490
Merge: bbe4a65 deec570
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date:   Thu Nov 2 09:54:54 2017 +0100

    Update upstream source from tag 'upstream/2017-10-30'
    
    Update to upstream version '2017-10-30'
    with Debian dir 9ce74b0676435411d5599210e206a5c49df594df

 ChangeLog           |   39 ++
 VERSION             |    2 +-
 configure           |   24 +-
 src/cigar.c         |   11 +-
 src/cigar.h         |    4 +-
 src/get-genome.c    |   95 ++--
 src/gmap.c          |    2 +-
 src/gsnap.c         |    4 +-
 src/pairpool.c      |   22 +-
 src/sarray-search.c |   51 ++-
 src/stage3.c        | 1234 ++++++++++++++++++++++++++++++++++++++++-----------
 src/stage3hr.c      |    7 +-
 src/substring.c     |   62 +--
 13 files changed, 1221 insertions(+), 336 deletions(-)

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