[med-svn] [r-bioc-biocparallel] branch master updated (770a126 -> cc25bc9)

[Andreas Tille]

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tille pushed a change to branch master
in repository r-bioc-biocparallel.

      from  770a126   upload to unstable
       new  72db2ab   New upstream version 1.12.0
       new  79e7ac9   Update upstream source from tag 'upstream/1.12.0'
       new  ce159c3   New upstream version
       new  8d66298   Use Debian packaged boost library, upload to unstable
       new  cc25bc9   Architecture: any

The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 DESCRIPTION                                    |  17 +-
 NAMESPACE                                      |   8 +-
 NEWS                                           |  13 +-
 R/SnowParam-class.R                            |  10 +-
 R/bploop.R                                     |  13 +-
 R/ipcmutex.R                                   |  43 +++++
 R/progress.R                                   |  36 ++--
 R/register.R                                   |  34 ++--
 build/BiocParallel.pdf                         | Bin 212948 -> 217955 bytes
 build/vignette.rds                             | Bin 289 -> 290 bytes
 debian/changelog                               |   8 +
 debian/control                                 |   5 +-
 debian/patches/series                          |   1 +
 debian/patches/use_debian_packages_boost.patch |  14 ++
 inst/doc/Errors_Logs_And_Debugging.R           |  64 +++----
 inst/doc/Errors_Logs_And_Debugging.pdf         | Bin 149232 -> 180054 bytes
 inst/doc/Introduction_To_BiocParallel.R        |  81 +++++----
 inst/doc/Introduction_To_BiocParallel.Rnw      |  57 ++++++-
 inst/doc/Introduction_To_BiocParallel.pdf      | Bin 185989 -> 217744 bytes
 inst/unitTests/test_ipcmutex.R                 |  24 +++
 man/ipcmutex.Rd                                | 160 ++++++++++++++++++
 src/ipcmutex.cpp                               | 224 +++++++++++++++++++++++++
 vignettes/Introduction_To_BiocParallel.Rnw     |  57 ++++++-
 23 files changed, 754 insertions(+), 115 deletions(-)
 create mode 100644 R/ipcmutex.R
 create mode 100644 debian/patches/use_debian_packages_boost.patch
 create mode 100644 inst/unitTests/test_ipcmutex.R
 create mode 100644 man/ipcmutex.Rd
 create mode 100644 src/ipcmutex.cpp

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