[med-svn] [r-bioc-multtest] 01/10: Add missing dependency for r-cran-apmswapp

[Andreas Tille]

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tille pushed a commit to branch master
in repository r-bioc-multtest.

commit 6bb1ea263a85cb3070ca1f8b00fbd8918d4936b5
Author: Andreas Tille <tille at debian.org>
Date:   Wed May 13 13:24:38 2015 +0000

    Add missing dependency for r-cran-apmswapp
---
 debian/changelog     |  5 +++++
 debian/compat        |  1 +
 debian/control       | 42 ++++++++++++++++++++++++++++++++++++++++++
 debian/copyright     | 27 +++++++++++++++++++++++++++
 debian/rules         |  4 ++++
 debian/source/format |  1 +
 debian/watch         |  3 +++
 7 files changed, 83 insertions(+)

diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..82ed36f
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+r-bioc-multtest (2.24.0-1) UNRELEASED; urgency=medium
+
+  * Initial release (closes: #???).
+
+ -- Andreas Tille <tille at debian.org>  Wed, 13 May 2015 15:20:31 +0200
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..05b05b4
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,42 @@
+Source: r-bioc-multtest
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: gnu-r
+Priority: optional
+Build-Depends: debhelper (>= 9),
+               cdbs,
+               r-base-dev,
+               r-bioc-biobase,
+               r-cran-survival,
+               r-cran-mass
+Standards-Version: 3.9.6
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-multtest/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-multtest/trunk/
+Homepage: http://bioconductor.org/packages/release/bioc/html/multtest.html
+
+Package: r-bioc-multtest
+Architecture: any
+Depends: ${R:Depends},
+         ${misc:Depends},
+         ${shlibs:Depends},
+         r-bioc-biobase,
+         r-cran-survival,
+         r-cran-mass
+Description: Bioconductor resampling-based multiple hypothesis testing
+ Non-parametric bootstrap and permutation resampling-based multiple
+ testing procedures (including empirical Bayes methods) for controlling
+ the family-wise error rate (FWER), generalized family-wise error rate
+ (gFWER), tail probability of the proportion of false positives (TPPFP),
+ and false discovery rate (FDR). Several choices of bootstrap-based null
+ distribution are implemented (centered, centered and scaled,
+ quantile-transformed). Single-step and step-wise methods are available.
+ Tests based on a variety of t- and F-statistics (including t-statistics
+ based on regression parameters from linear and survival models as well
+ as those based on correlation parameters) are included. When probing
+ hypotheses with t-statistics, users may also select a potentially faster
+ null distribution which is multivariate normal with mean zero and
+ variance covariance matrix derived from the vector influence function.
+ Results are reported in terms of adjusted p-values, confidence regions
+ and test statistic cutoffs. The procedures are directly applicable to
+ identifying differentially expressed genes in DNA microarray
+ experiments.
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..ba2be1e
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,27 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: multtest
+Upstream-Contact: Katherine S. Pollard <kpollard at gladstone.ucsf.edu>
+Source: http://bioconductor.org/packages/release/bioc/html/multtest.html
+
+Files: *
+Copyright: © 2006-2015 Katherine S. Pollard, Houston N. Gilbert, Yongchao Ge, Sandra Taylor, Sandrine Dudoit
+License: LGPL-3+
+
+
+Files: debian/*
+Copyright: 2015 Andreas Tille <tille at debian.org>
+License: LGPL-3+
+
+License: LGPL-3+
+ This program is free software: you can redistribute it and/or modify it
+ under the terms of the GNU Lesser General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or (at
+ your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ GNU Lesser General Public License for more details.
+ .
+ On Debian systems, the complete text of the GNU Lesser General Public
+ License version 3 can be found in ‘/usr/share/common-licenses/LGPL-3’.
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..aeb12b3
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,4 @@
+#!/usr/bin/make -f
+
+debRreposname=bioc
+include /usr/share/R/debian/r-cran.mk
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..ac012c7
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,3 @@
+version=3
+opts=downloadurlmangle=s/\.\./packages\/release\/bioc/ \
+ http://www.bioconductor.org/packages/release/bioc/html/multtest.html .*/multtest_([\d\.]+)\.tar\.gz

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