[med-svn] [r-bioc-multtest] 09/10: Update upstream source from tag 'upstream/2.32.0'

[Andreas Tille]

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tille pushed a commit to branch master
in repository r-bioc-multtest.

commit 230395665ef4aa82a50cdbf7a001d017012c266c
Merge: 5b2a95c 1737406
Author: Andreas Tille <tille at debian.org>
Date:   Wed Nov 8 10:12:57 2017 +0100

    Update upstream source from tag 'upstream/2.32.0'
    
    Update to upstream version '2.32.0'
    with Debian dir 2035e1c19bccd3356717bad6103ef6bb158528fc

 DESCRIPTION                 |  33 ++
 NAMESPACE                   |  40 ++
 R/EBMTP.R                   | 550 ++++++++++++++++++++++++++
 R/EBzzz.R                   | 627 +++++++++++++++++++++++++++++
 R/ICQTNullDist.R            | 321 +++++++++++++++
 R/mt.basic.R                | 418 ++++++++++++++++++++
 R/mt.func.R                 | 375 ++++++++++++++++++
 R/nulldistn_c.R             | 198 ++++++++++
 R/statistics.R              | 635 ++++++++++++++++++++++++++++++
 R/test.R                    | 712 +++++++++++++++++++++++++++++++++
 R/zzz.R                     | 692 ++++++++++++++++++++++++++++++++
 data/golub.RData            | Bin 0 -> 304276 bytes
 inst/CITATION               |  14 +
 inst/otherDocs/MTP.Rnw      | 908 ++++++++++++++++++++++++++++++++++++++++++
 inst/otherDocs/MTPALL.Rnw   | 493 +++++++++++++++++++++++
 inst/otherDocs/multtest.Rnw | 394 +++++++++++++++++++
 man/EBMTP-class.Rd          | 150 +++++++
 man/EBMTP.Rd                | 113 ++++++
 man/Hsets.Rd                | 103 +++++
 man/MTP-class.Rd            | 133 +++++++
 man/MTP-methods.Rd          | 114 ++++++
 man/MTP.Rd                  | 219 +++++++++++
 man/boot.null.Rd            | 144 +++++++
 man/corr.null.Rd            |  90 +++++
 man/fwer2gfwer.Rd           |  77 ++++
 man/get.index.Rd            |  45 +++
 man/golub.Rd                |  32 ++
 man/meanX.Rd                | 114 ++++++
 man/mt.internal.Rd          |  60 +++
 man/mt.maxT.Rd              | 142 +++++++
 man/mt.plot.Rd              |  89 +++++
 man/mt.rawp2adjp.Rd         | 155 ++++++++
 man/mt.reject.Rd            |  48 +++
 man/mt.sample.teststat.Rd   | 100 +++++
 man/mt.teststat.Rd          |  93 +++++
 man/ss.maxT.Rd              |  85 ++++
 man/wapply.Rd               |  50 +++
 src/Makevars                |   2 +
 src/Makevars.win            |   2 +
 src/Rpack.c                 | 316 +++++++++++++++
 src/VScount.c               |  40 ++
 src/block_sampling_fixed.c  |  98 +++++
 src/bootloop.c              |  55 +++
 src/mt.c                    | 580 +++++++++++++++++++++++++++
 src/mt.h                    | 201 ++++++++++
 src/pairt_sampling.c        | 171 ++++++++
 src/pairt_sampling_fixed.c  |  63 +++
 src/random.c                | 144 +++++++
 src/sampling.c              | 225 +++++++++++
 src/sampling_fixed.c        |  83 ++++
 src/stat_func.c             | 857 ++++++++++++++++++++++++++++++++++++++++
 src/stat_order.c            | 142 +++++++
 vignettes/MTP.pdf           | Bin 0 -> 271306 bytes
 vignettes/MTP.tex           | 933 ++++++++++++++++++++++++++++++++++++++++++++
 vignettes/MTPALL.pdf        | Bin 0 -> 280159 bytes
 vignettes/golub.R           |  48 +++
 vignettes/multtest.bib      | 293 ++++++++++++++
 vignettes/multtest.pdf      | Bin 0 -> 1699943 bytes
 58 files changed, 12819 insertions(+)

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