[med-svn] [r-bioc-preprocesscore] 05/14: New upstream, added autopkgtest

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository r-bioc-preprocesscore.

commit 0b293c4e22ff59b84e8faefefa493e9a70572240
Author: Andreas Tille <tille at debian.org>
Date:   Thu Jun 19 13:57:57 2014 +0000

    New upstream, added autopkgtest
---
 debian/README.test         |  7 +++++--
 debian/changelog           |  6 ++++--
 debian/control             |  4 ++--
 debian/docs                |  2 ++
 debian/tests/control       |  3 +++
 debian/tests/run-unit-test | 12 ++++++++++++
 6 files changed, 28 insertions(+), 6 deletions(-)

diff --git a/debian/README.test b/debian/README.test
index bdc14c8..55a9142 100644
--- a/debian/README.test
+++ b/debian/README.test
@@ -1,5 +1,8 @@
 Notes on how this package can be tested.
 ────────────────────────────────────────
 
-This package can be tested by loading it into R with the command
-‘library(preprocessCore)’ in order to confirm its integrity.
+To run the unit tests provided by the package you can do
+
+   sh  run-unit-test
+
+in this directory.
diff --git a/debian/changelog b/debian/changelog
index 05b591a..6162373 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,9 +1,11 @@
-r-bioc-preprocesscore (1.24.0-1) UNRELEASED; urgency=low
+r-bioc-preprocesscore (1.26.1-1) unstable; urgency=low
 
   * New upstream version
   * debian/{control,copyright}: Fixed homepage
+  * cme fix dpkg-control
+  * add autookgtest
 
- -- Andreas Tille <tille at debian.org>  Fri, 18 Oct 2013 11:12:13 +0200
+ -- Andreas Tille <tille at debian.org>  Thu, 19 Jun 2014 15:50:14 +0200
 
 r-bioc-preprocesscore (1.22.0-1) unstable; urgency=low
 
diff --git a/debian/control b/debian/control
index 7cc2aa9..8159de8 100644
--- a/debian/control
+++ b/debian/control
@@ -3,10 +3,11 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
 Uploaders: Andreas Tille <tille at debian.org>
 Section: gnu-r
 Priority: optional
+Testsuite: autopkgtest
 Build-Depends: debhelper (>= 9),
                cdbs,
                r-base-dev
-Standards-Version: 3.9.4
+Standards-Version: 3.9.5
 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-preprocesscore/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-preprocesscore/trunk/
 Homepage: http://bioconductor.org/packages/release/bioc/html/preprocessCore.html
@@ -19,4 +20,3 @@ Depends: ${R:Depends},
 Description: BioConductor collection of pre-processing functions
  This BioConductor module contains a library of pre-processing
  functions.  It is imported by several other BioConductor modules.
-
diff --git a/debian/docs b/debian/docs
index 50f6656..3adf0d6 100644
--- a/debian/docs
+++ b/debian/docs
@@ -1 +1,3 @@
 debian/README.test
+debian/tests/run-unit-test
+tests
diff --git a/debian/tests/control b/debian/tests/control
new file mode 100644
index 0000000..25377fc
--- /dev/null
+++ b/debian/tests/control
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @, r-cran-runit
+Restrictions: allow-stderr
diff --git a/debian/tests/run-unit-test b/debian/tests/run-unit-test
new file mode 100644
index 0000000..8e9d464
--- /dev/null
+++ b/debian/tests/run-unit-test
@@ -0,0 +1,12 @@
+#!/bin/sh -e
+
+pkg=r-bioc-preprocesscore
+if [ "$ADTTMP" = "" ] ; then
+  ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
+fi
+cd $ADTTMP
+cp /usr/share/doc/${pkg}/tests/* $ADTTMP
+for runtest in `ls *.R` ; do
+    R --no-save < $runtest
+done
+rm -f $ADTTMP/*

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