[med-svn] [r-bioc-preprocesscore] 13/14: Update upstream source from tag 'upstream/1.38.1'
Andreas Tille
tille at debian.org
Wed Nov 8 10:07:58 UTC 2017
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tille pushed a commit to branch master
in repository r-bioc-preprocesscore.
commit f964689bb25505177481ff23ca4c59431f8a6fe1
Merge: 8231ce2 3b8e990
Author: Andreas Tille <tille at debian.org>
Date: Wed Nov 8 11:04:17 2017 +0100
Update upstream source from tag 'upstream/1.38.1'
Update to upstream version '1.38.1'
with Debian dir b3c404bdcc153cc6c9120e1afa607c3b2e1b23ca
CHANGELOG | 125 +
DESCRIPTION | 16 +
NAMESPACE | 6 +
R/colSummarize.R | 146 +
R/normalize.quantiles.R | 108 +
R/plmd.R | 28 +
R/plmr.R | 106 +
R/quantile_extensions.R | 106 +
R/rcModel.R | 125 +
R/rma.background.correct.R | 54 +
R/subColSummarize.R | 218 +
configure | 4497 +++++++++++++++++++++
configure.in | 80 +
inst/include/R_subColSummarize.h | 16 +
inst/include/R_subColSummarize_stubs.c | 128 +
inst/include/avg.h | 91 +
inst/include/avg_log.h | 92 +
inst/include/biweight.h | 113 +
inst/include/lm.h | 30 +
inst/include/log_avg.h | 67 +
inst/include/log_median.h | 90 +
inst/include/median.h | 89 +
inst/include/median_log.h | 88 +
inst/include/medianpolish.h | 143 +
inst/include/plmd.h | 21 +
inst/include/plmr.h | 164 +
inst/include/preprocessCore_background_stubs.c | 48 +
inst/include/preprocessCore_background_stubs.h | 3 +
inst/include/preprocessCore_normalization_stubs.c | 102 +
inst/include/preprocessCore_normalization_stubs.h | 5 +
inst/include/preprocessCore_summarization_stubs.c | 1438 +++++++
inst/include/preprocessCore_summarization_stubs.h | 51 +
inst/include/qnorm.h | 30 +
inst/include/rlm.h | 139 +
inst/include/rlm_se.h | 79 +
inst/include/rma_background4.h | 75 +
inst/include/weightedkerneldensity_stubs.c | 25 +
inst/include/weightedkerneldensity_stubs.h | 1 +
man/colSummarize.Rd | 78 +
man/normalize.quantiles.Rd | 49 +
man/normalize.quantiles.in.blocks.Rd | 69 +
man/normalize.quantiles.robust.Rd | 51 +
man/normalize.quantiles.target.Rd | 56 +
man/rcModelPLMd.Rd | 65 +
man/rcModelPLMr.Rd | 118 +
man/rcModels.Rd | 80 +
man/rma.background.correct.Rd | 37 +
man/subColSummarize.Rd | 94 +
man/subrcModels.Rd | 93 +
src/Makevars | 3 +
src/Makevars.in | 3 +
src/Makevars.win | 2 +
src/R_colSummarize.c | 555 +++
src/R_colSummarize.h | 16 +
src/R_plmd_interfaces.c | 204 +
src/R_plmr_interfaces.c | 567 +++
src/R_plmr_interfaces.h | 15 +
src/R_rlm_interfaces.c | 604 +++
src/R_rlm_interfaces.h | 11 +
src/R_subColSummarize.c | 1773 ++++++++
src/R_subColSummarize.h | 16 +
src/R_subrcModel_interfaces.c | 692 ++++
src/avg.c | 297 ++
src/avg.h | 10 +
src/avg_log.c | 304 ++
src/avg_log.h | 10 +
src/biweight.c | 397 ++
src/biweight.h | 12 +
src/dqrls.h | 2 +
src/init_package.c | 215 +
src/lm.c | 236 ++
src/lm.h | 9 +
src/log_avg.c | 237 ++
src/log_avg.h | 8 +
src/log_median.c | 152 +
src/log_median.h | 12 +
src/matrix_functions.c | 412 ++
src/matrix_functions.h | 12 +
src/median.c | 224 +
src/median.h | 15 +
src/median_log.c | 233 ++
src/median_log.h | 15 +
src/medianpolish.c | 403 ++
src/medianpolish.h | 13 +
src/plmd.c | 756 ++++
src/plmd.h | 21 +
src/plmr.c | 1051 +++++
src/plmr.h | 20 +
src/psi_fns.c | 292 ++
src/psi_fns.h | 18 +
src/qnorm.c | 3216 +++++++++++++++
src/qnorm.h | 39 +
src/rlm.c | 454 +++
src/rlm.h | 30 +
src/rlm_anova.c | 1653 ++++++++
src/rlm_se.c | 432 ++
src/rlm_se.h | 9 +
src/rma_background4.c | 498 +++
src/rma_background4.h | 10 +
src/rma_common.c | 128 +
src/rma_common.h | 10 +
src/weightedkerneldensity.c | 868 ++++
src/weightedkerneldensity.h | 7 +
tests/PLMdtest.R | 211 +
tests/qnormtest.R | 54 +
105 files changed, 26999 insertions(+)
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