[med-svn] [r-bioc-affyio] 02/06: New upstream version 1.48.0
Andreas Tille
tille at debian.org
Wed Nov 8 10:22:50 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository r-bioc-affyio.
commit 4528038266754623267703b28f2823a44b970f13
Author: Andreas Tille <tille at debian.org>
Date: Wed Nov 8 11:18:20 2017 +0100
New upstream version 1.48.0
---
DESCRIPTION | 10 +-
NAMESPACE | 2 +-
configure | 3158 ++++++++++++++-----------------
configure.in | 51 +-
src/Makevars | 4 +-
src/fread_functions.c | 32 +-
src/fread_functions.h | 34 +-
src/read_abatch.c | 58 +-
src/read_bpmap.c | 2 +-
src/read_cdf_xda.c | 2 +-
src/read_cdffile2.c | 2 +-
src/read_celfile_generic.c | 65 +-
src/read_clf.c | 2 +-
src/read_generic.c | 25 +-
src/read_generic.h | 10 +-
src/read_multichannel_celfile_generic.c | 108 +-
src/read_pgf.c | 4 +-
17 files changed, 1619 insertions(+), 1950 deletions(-)
diff --git a/DESCRIPTION b/DESCRIPTION
index 24b643a..db4083a 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,14 +1,14 @@
Package: affyio
-Version: 1.46.0
+Version: 1.48.0
Title: Tools for parsing Affymetrix data files
-Author: Benjamin Milo Bolstad <bmb at bmbolstad.com>
-Maintainer: Benjamin Milo Bolstad <bmb at bmbolstad.com>
+Author: Ben Bolstad <bmb at bmbolstad.com>
+Maintainer: Ben Bolstad <bmb at bmbolstad.com>
Depends: R (>= 2.6.0)
-Imports: zlibbioc
+Imports: zlibbioc, methods
Description: Routines for parsing Affymetrix data files based upon file format information. Primary focus is on accessing the CEL and CDF file formats.
License: LGPL (>= 2)
URL: https://github.com/bmbolstad/affyio
biocViews: Microarray, DataImport, Infrastructure
LazyLoad: yes
NeedsCompilation: yes
-Packaged: 2017-04-24 22:24:44 UTC; biocbuild
+Packaged: 2017-10-30 22:37:03 UTC; biocbuild
diff --git a/NAMESPACE b/NAMESPACE
index 50a7072..683c4b2 100644
--- a/NAMESPACE
+++ b/NAMESPACE
@@ -1,4 +1,4 @@
exportPattern("^[^\\.]")
useDynLib("affyio")
import(zlibbioc)
-
+importFrom("methods", "is")
diff --git a/configure b/configure
index ccf1402..2e62e80 100755
--- a/configure
+++ b/configure
@@ -1,18 +1,20 @@
#! /bin/sh
# Guess values for system-dependent variables and create Makefiles.
-# Generated by GNU Autoconf 2.63.
+# Generated by GNU Autoconf 2.69.
+#
+#
+# Copyright (C) 1992-1996, 1998-2012 Free Software Foundation, Inc.
+#
#
-# Copyright (C) 1992, 1993, 1994, 1995, 1996, 1998, 1999, 2000, 2001,
-# 2002, 2003, 2004, 2005, 2006, 2007, 2008 Free Software Foundation, Inc.
# This configure script is free software; the Free Software Foundation
# gives unlimited permission to copy, distribute and modify it.
-## --------------------- ##
-## M4sh Initialization. ##
-## --------------------- ##
+## -------------------- ##
+## M4sh Initialization. ##
+## -------------------- ##
# Be more Bourne compatible
DUALCASE=1; export DUALCASE # for MKS sh
-if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then
+if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then :
emulate sh
NULLCMD=:
# Pre-4.2 versions of Zsh do word splitting on ${1+"$@"}, which
@@ -20,23 +22,15 @@ if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then
alias -g '${1+"$@"}'='"$@"'
setopt NO_GLOB_SUBST
else
- case `(set -o) 2>/dev/null` in
- *posix*) set -o posix ;;
+ case `(set -o) 2>/dev/null` in #(
+ *posix*) :
+ set -o posix ;; #(
+ *) :
+ ;;
esac
-
fi
-
-
-# PATH needs CR
-# Avoid depending upon Character Ranges.
-as_cr_letters='abcdefghijklmnopqrstuvwxyz'
-as_cr_LETTERS='ABCDEFGHIJKLMNOPQRSTUVWXYZ'
-as_cr_Letters=$as_cr_letters$as_cr_LETTERS
-as_cr_digits='0123456789'
-as_cr_alnum=$as_cr_Letters$as_cr_digits
-
as_nl='
'
export as_nl
@@ -44,7 +38,13 @@ export as_nl
as_echo='\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\'
as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo
as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo$as_echo
-if (test "X`printf %s $as_echo`" = "X$as_echo") 2>/dev/null; then
+# Prefer a ksh shell builtin over an external printf program on Solaris,
+# but without wasting forks for bash or zsh.
+if test -z "$BASH_VERSION$ZSH_VERSION" \
+ && (test "X`print -r -- $as_echo`" = "X$as_echo") 2>/dev/null; then
+ as_echo='print -r --'
+ as_echo_n='print -rn --'
+elif (test "X`printf %s $as_echo`" = "X$as_echo") 2>/dev/null; then
as_echo='printf %s\n'
as_echo_n='printf %s'
else
@@ -55,7 +55,7 @@ else
as_echo_body='eval expr "X$1" : "X\\(.*\\)"'
as_echo_n_body='eval
arg=$1;
- case $arg in
+ case $arg in #(
*"$as_nl"*)
expr "X$arg" : "X\\(.*\\)$as_nl";
arg=`expr "X$arg" : ".*$as_nl\\(.*\\)"`;;
@@ -78,13 +78,6 @@ if test "${PATH_SEPARATOR+set}" != set; then
}
fi
-# Support unset when possible.
-if ( (MAIL=60; unset MAIL) || exit) >/dev/null 2>&1; then
- as_unset=unset
-else
- as_unset=false
-fi
-
# IFS
# We need space, tab and new line, in precisely that order. Quoting is
@@ -94,15 +87,16 @@ fi
IFS=" "" $as_nl"
# Find who we are. Look in the path if we contain no directory separator.
-case $0 in
+as_myself=
+case $0 in #((
*[\\/]* ) as_myself=$0 ;;
*) as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
- test -r "$as_dir/$0" && as_myself=$as_dir/$0 && break
-done
+ test -r "$as_dir/$0" && as_myself=$as_dir/$0 && break
+ done
IFS=$as_save_IFS
;;
@@ -114,12 +108,16 @@ if test "x$as_myself" = x; then
fi
if test ! -f "$as_myself"; then
$as_echo "$as_myself: error: cannot find myself; rerun with an absolute file name" >&2
- { (exit 1); exit 1; }
+ exit 1
fi
-# Work around bugs in pre-3.0 UWIN ksh.
-for as_var in ENV MAIL MAILPATH
-do ($as_unset $as_var) >/dev/null 2>&1 && $as_unset $as_var
+# Unset variables that we do not need and which cause bugs (e.g. in
+# pre-3.0 UWIN ksh). But do not cause bugs in bash 2.01; the "|| exit 1"
+# suppresses any "Segmentation fault" message there. '((' could
+# trigger a bug in pdksh 5.2.14.
+for as_var in BASH_ENV ENV MAIL MAILPATH
+do eval test x\${$as_var+set} = xset \
+ && ( (unset $as_var) || exit 1) >/dev/null 2>&1 && unset $as_var || :
done
PS1='$ '
PS2='> '
@@ -131,330 +129,344 @@ export LC_ALL
LANGUAGE=C
export LANGUAGE
-# Required to use basename.
-if expr a : '\(a\)' >/dev/null 2>&1 &&
- test "X`expr 00001 : '.*\(...\)'`" = X001; then
- as_expr=expr
-else
- as_expr=false
-fi
-
-if (basename -- /) >/dev/null 2>&1 && test "X`basename -- / 2>&1`" = "X/"; then
- as_basename=basename
-else
- as_basename=false
-fi
-
-
-# Name of the executable.
-as_me=`$as_basename -- "$0" ||
-$as_expr X/"$0" : '.*/\([^/][^/]*\)/*$' \| \
- X"$0" : 'X\(//\)$' \| \
- X"$0" : 'X\(/\)' \| . 2>/dev/null ||
-$as_echo X/"$0" |
- sed '/^.*\/\([^/][^/]*\)\/*$/{
- s//\1/
- q
- }
- /^X\/\(\/\/\)$/{
- s//\1/
- q
- }
- /^X\/\(\/\).*/{
- s//\1/
- q
- }
- s/.*/./; q'`
-
# CDPATH.
-$as_unset CDPATH
-
-
+(unset CDPATH) >/dev/null 2>&1 && unset CDPATH
+
+# Use a proper internal environment variable to ensure we don't fall
+ # into an infinite loop, continuously re-executing ourselves.
+ if test x"${_as_can_reexec}" != xno && test "x$CONFIG_SHELL" != x; then
+ _as_can_reexec=no; export _as_can_reexec;
+ # We cannot yet assume a decent shell, so we have to provide a
+# neutralization value for shells without unset; and this also
+# works around shells that cannot unset nonexistent variables.
+# Preserve -v and -x to the replacement shell.
+BASH_ENV=/dev/null
+ENV=/dev/null
+(unset BASH_ENV) >/dev/null 2>&1 && unset BASH_ENV ENV
+case $- in # ((((
+ *v*x* | *x*v* ) as_opts=-vx ;;
+ *v* ) as_opts=-v ;;
+ *x* ) as_opts=-x ;;
+ * ) as_opts= ;;
+esac
+exec $CONFIG_SHELL $as_opts "$as_myself" ${1+"$@"}
+# Admittedly, this is quite paranoid, since all the known shells bail
+# out after a failed `exec'.
+$as_echo "$0: could not re-execute with $CONFIG_SHELL" >&2
+as_fn_exit 255
+ fi
+ # We don't want this to propagate to other subprocesses.
+ { _as_can_reexec=; unset _as_can_reexec;}
if test "x$CONFIG_SHELL" = x; then
- if (eval ":") 2>/dev/null; then
- as_have_required=yes
+ as_bourne_compatible="if test -n \"\${ZSH_VERSION+set}\" && (emulate sh) >/dev/null 2>&1; then :
+ emulate sh
+ NULLCMD=:
+ # Pre-4.2 versions of Zsh do word splitting on \${1+\"\$@\"}, which
+ # is contrary to our usage. Disable this feature.
+ alias -g '\${1+\"\$@\"}'='\"\$@\"'
+ setopt NO_GLOB_SUBST
else
- as_have_required=no
+ case \`(set -o) 2>/dev/null\` in #(
+ *posix*) :
+ set -o posix ;; #(
+ *) :
+ ;;
+esac
fi
-
- if test $as_have_required = yes && (eval ":
-(as_func_return () {
- (exit \$1)
-}
-as_func_success () {
- as_func_return 0
-}
-as_func_failure () {
- as_func_return 1
-}
-as_func_ret_success () {
- return 0
-}
-as_func_ret_failure () {
- return 1
-}
+"
+ as_required="as_fn_return () { (exit \$1); }
+as_fn_success () { as_fn_return 0; }
+as_fn_failure () { as_fn_return 1; }
+as_fn_ret_success () { return 0; }
+as_fn_ret_failure () { return 1; }
exitcode=0
-if as_func_success; then
- :
-else
- exitcode=1
- echo as_func_success failed.
-fi
-
-if as_func_failure; then
- exitcode=1
- echo as_func_failure succeeded.
-fi
+as_fn_success || { exitcode=1; echo as_fn_success failed.; }
+as_fn_failure && { exitcode=1; echo as_fn_failure succeeded.; }
+as_fn_ret_success || { exitcode=1; echo as_fn_ret_success failed.; }
+as_fn_ret_failure && { exitcode=1; echo as_fn_ret_failure succeeded.; }
+if ( set x; as_fn_ret_success y && test x = \"\$1\" ); then :
-if as_func_ret_success; then
- :
else
- exitcode=1
- echo as_func_ret_success failed.
-fi
-
-if as_func_ret_failure; then
- exitcode=1
- echo as_func_ret_failure succeeded.
-fi
-
-if ( set x; as_func_ret_success y && test x = \"\$1\" ); then
- :
+ exitcode=1; echo positional parameters were not saved.
+fi
+test x\$exitcode = x0 || exit 1
+test -x / || exit 1"
+ as_suggested=" as_lineno_1=";as_suggested=$as_suggested$LINENO;as_suggested=$as_suggested" as_lineno_1a=\$LINENO
+ as_lineno_2=";as_suggested=$as_suggested$LINENO;as_suggested=$as_suggested" as_lineno_2a=\$LINENO
+ eval 'test \"x\$as_lineno_1'\$as_run'\" != \"x\$as_lineno_2'\$as_run'\" &&
+ test \"x\`expr \$as_lineno_1'\$as_run' + 1\`\" = \"x\$as_lineno_2'\$as_run'\"' || exit 1
+test \$(( 1 + 1 )) = 2 || exit 1"
+ if (eval "$as_required") 2>/dev/null; then :
+ as_have_required=yes
else
- exitcode=1
- echo positional parameters were not saved.
+ as_have_required=no
fi
+ if test x$as_have_required = xyes && (eval "$as_suggested") 2>/dev/null; then :
-test \$exitcode = 0) || { (exit 1); exit 1; }
-
-(
- as_lineno_1=\$LINENO
- as_lineno_2=\$LINENO
- test \"x\$as_lineno_1\" != \"x\$as_lineno_2\" &&
- test \"x\`expr \$as_lineno_1 + 1\`\" = \"x\$as_lineno_2\") || { (exit 1); exit 1; }
-") 2> /dev/null; then
- :
else
- as_candidate_shells=
- as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+as_found=false
for as_dir in /bin$PATH_SEPARATOR/usr/bin$PATH_SEPARATOR$PATH
do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
- case $as_dir in
+ as_found=:
+ case $as_dir in #(
/*)
for as_base in sh bash ksh sh5; do
- as_candidate_shells="$as_candidate_shells $as_dir/$as_base"
+ # Try only shells that exist, to save several forks.
+ as_shell=$as_dir/$as_base
+ if { test -f "$as_shell" || test -f "$as_shell.exe"; } &&
+ { $as_echo "$as_bourne_compatible""$as_required" | as_run=a "$as_shell"; } 2>/dev/null; then :
+ CONFIG_SHELL=$as_shell as_have_required=yes
+ if { $as_echo "$as_bourne_compatible""$as_suggested" | as_run=a "$as_shell"; } 2>/dev/null; then :
+ break 2
+fi
+fi
done;;
esac
+ as_found=false
done
+$as_found || { if { test -f "$SHELL" || test -f "$SHELL.exe"; } &&
+ { $as_echo "$as_bourne_compatible""$as_required" | as_run=a "$SHELL"; } 2>/dev/null; then :
+ CONFIG_SHELL=$SHELL as_have_required=yes
+fi; }
IFS=$as_save_IFS
- for as_shell in $as_candidate_shells $SHELL; do
- # Try only shells that exist, to save several forks.
- if { test -f "$as_shell" || test -f "$as_shell.exe"; } &&
- { ("$as_shell") 2> /dev/null <<\_ASEOF
-if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then
- emulate sh
- NULLCMD=:
- # Pre-4.2 versions of Zsh do word splitting on ${1+"$@"}, which
- # is contrary to our usage. Disable this feature.
- alias -g '${1+"$@"}'='"$@"'
- setopt NO_GLOB_SUBST
-else
- case `(set -o) 2>/dev/null` in
- *posix*) set -o posix ;;
-esac
-
-fi
-
-
-:
-_ASEOF
-}; then
- CONFIG_SHELL=$as_shell
- as_have_required=yes
- if { "$as_shell" 2> /dev/null <<\_ASEOF
-if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then
- emulate sh
- NULLCMD=:
- # Pre-4.2 versions of Zsh do word splitting on ${1+"$@"}, which
- # is contrary to our usage. Disable this feature.
- alias -g '${1+"$@"}'='"$@"'
- setopt NO_GLOB_SUBST
-else
- case `(set -o) 2>/dev/null` in
- *posix*) set -o posix ;;
+ if test "x$CONFIG_SHELL" != x; then :
+ export CONFIG_SHELL
+ # We cannot yet assume a decent shell, so we have to provide a
+# neutralization value for shells without unset; and this also
+# works around shells that cannot unset nonexistent variables.
+# Preserve -v and -x to the replacement shell.
+BASH_ENV=/dev/null
+ENV=/dev/null
+(unset BASH_ENV) >/dev/null 2>&1 && unset BASH_ENV ENV
+case $- in # ((((
+ *v*x* | *x*v* ) as_opts=-vx ;;
+ *v* ) as_opts=-v ;;
+ *x* ) as_opts=-x ;;
+ * ) as_opts= ;;
esac
-
-fi
-
-
-:
-(as_func_return () {
- (exit $1)
-}
-as_func_success () {
- as_func_return 0
-}
-as_func_failure () {
- as_func_return 1
-}
-as_func_ret_success () {
- return 0
-}
-as_func_ret_failure () {
- return 1
-}
-
-exitcode=0
-if as_func_success; then
- :
-else
- exitcode=1
- echo as_func_success failed.
-fi
-
-if as_func_failure; then
- exitcode=1
- echo as_func_failure succeeded.
-fi
-
-if as_func_ret_success; then
- :
-else
- exitcode=1
- echo as_func_ret_success failed.
-fi
-
-if as_func_ret_failure; then
- exitcode=1
- echo as_func_ret_failure succeeded.
-fi
-
-if ( set x; as_func_ret_success y && test x = "$1" ); then
- :
-else
- exitcode=1
- echo positional parameters were not saved.
+exec $CONFIG_SHELL $as_opts "$as_myself" ${1+"$@"}
+# Admittedly, this is quite paranoid, since all the known shells bail
+# out after a failed `exec'.
+$as_echo "$0: could not re-execute with $CONFIG_SHELL" >&2
+exit 255
+fi
+
+ if test x$as_have_required = xno; then :
+ $as_echo "$0: This script requires a shell more modern than all"
+ $as_echo "$0: the shells that I found on your system."
+ if test x${ZSH_VERSION+set} = xset ; then
+ $as_echo "$0: In particular, zsh $ZSH_VERSION has bugs and should"
+ $as_echo "$0: be upgraded to zsh 4.3.4 or later."
+ else
+ $as_echo "$0: Please tell bug-autoconf at gnu.org about your system,
+$0: including any error possibly output before this
+$0: message. Then install a modern shell, or manually run
+$0: the script under such a shell if you do have one."
+ fi
+ exit 1
fi
-
-test $exitcode = 0) || { (exit 1); exit 1; }
-
-(
- as_lineno_1=$LINENO
- as_lineno_2=$LINENO
- test "x$as_lineno_1" != "x$as_lineno_2" &&
- test "x`expr $as_lineno_1 + 1`" = "x$as_lineno_2") || { (exit 1); exit 1; }
-
-_ASEOF
-}; then
- break
fi
-
fi
+SHELL=${CONFIG_SHELL-/bin/sh}
+export SHELL
+# Unset more variables known to interfere with behavior of common tools.
+CLICOLOR_FORCE= GREP_OPTIONS=
+unset CLICOLOR_FORCE GREP_OPTIONS
- done
-
- if test "x$CONFIG_SHELL" != x; then
- for as_var in BASH_ENV ENV
- do ($as_unset $as_var) >/dev/null 2>&1 && $as_unset $as_var
- done
- export CONFIG_SHELL
- exec "$CONFIG_SHELL" "$as_myself" ${1+"$@"}
-fi
+## --------------------- ##
+## M4sh Shell Functions. ##
+## --------------------- ##
+# as_fn_unset VAR
+# ---------------
+# Portably unset VAR.
+as_fn_unset ()
+{
+ { eval $1=; unset $1;}
+}
+as_unset=as_fn_unset
+# as_fn_set_status STATUS
+# -----------------------
+# Set $? to STATUS, without forking.
+as_fn_set_status ()
+{
+ return $1
+} # as_fn_set_status
- if test $as_have_required = no; then
- echo This script requires a shell more modern than all the
- echo shells that I found on your system. Please install a
- echo modern shell, or manually run the script under such a
- echo shell if you do have one.
- { (exit 1); exit 1; }
-fi
+# as_fn_exit STATUS
+# -----------------
+# Exit the shell with STATUS, even in a "trap 0" or "set -e" context.
+as_fn_exit ()
+{
+ set +e
+ as_fn_set_status $1
+ exit $1
+} # as_fn_exit
+
+# as_fn_mkdir_p
+# -------------
+# Create "$as_dir" as a directory, including parents if necessary.
+as_fn_mkdir_p ()
+{
+ case $as_dir in #(
+ -*) as_dir=./$as_dir;;
+ esac
+ test -d "$as_dir" || eval $as_mkdir_p || {
+ as_dirs=
+ while :; do
+ case $as_dir in #(
+ *\'*) as_qdir=`$as_echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #'(
+ *) as_qdir=$as_dir;;
+ esac
+ as_dirs="'$as_qdir' $as_dirs"
+ as_dir=`$as_dirname -- "$as_dir" ||
+$as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
+ X"$as_dir" : 'X\(//\)[^/]' \| \
+ X"$as_dir" : 'X\(//\)$' \| \
+ X"$as_dir" : 'X\(/\)' \| . 2>/dev/null ||
+$as_echo X"$as_dir" |
+ sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
+ s//\1/
+ q
+ }
+ /^X\(\/\/\)[^/].*/{
+ s//\1/
+ q
+ }
+ /^X\(\/\/\)$/{
+ s//\1/
+ q
+ }
+ /^X\(\/\).*/{
+ s//\1/
+ q
+ }
+ s/.*/./; q'`
+ test -d "$as_dir" && break
+ done
+ test -z "$as_dirs" || eval "mkdir $as_dirs"
+ } || test -d "$as_dir" || as_fn_error $? "cannot create directory $as_dir"
-fi
-fi
+} # as_fn_mkdir_p
+# as_fn_executable_p FILE
+# -----------------------
+# Test if FILE is an executable regular file.
+as_fn_executable_p ()
+{
+ test -f "$1" && test -x "$1"
+} # as_fn_executable_p
+# as_fn_append VAR VALUE
+# ----------------------
+# Append the text in VALUE to the end of the definition contained in VAR. Take
+# advantage of any shell optimizations that allow amortized linear growth over
+# repeated appends, instead of the typical quadratic growth present in naive
+# implementations.
+if (eval "as_var=1; as_var+=2; test x\$as_var = x12") 2>/dev/null; then :
+ eval 'as_fn_append ()
+ {
+ eval $1+=\$2
+ }'
+else
+ as_fn_append ()
+ {
+ eval $1=\$$1\$2
+ }
+fi # as_fn_append
+
+# as_fn_arith ARG...
+# ------------------
+# Perform arithmetic evaluation on the ARGs, and store the result in the
+# global $as_val. Take advantage of shells that can avoid forks. The arguments
+# must be portable across $(()) and expr.
+if (eval "test \$(( 1 + 1 )) = 2") 2>/dev/null; then :
+ eval 'as_fn_arith ()
+ {
+ as_val=$(( $* ))
+ }'
+else
+ as_fn_arith ()
+ {
+ as_val=`expr "$@" || test $? -eq 1`
+ }
+fi # as_fn_arith
-(eval "as_func_return () {
- (exit \$1)
-}
-as_func_success () {
- as_func_return 0
-}
-as_func_failure () {
- as_func_return 1
-}
-as_func_ret_success () {
- return 0
-}
-as_func_ret_failure () {
- return 1
-}
+# as_fn_error STATUS ERROR [LINENO LOG_FD]
+# ----------------------------------------
+# Output "`basename $0`: error: ERROR" to stderr. If LINENO and LOG_FD are
+# provided, also output the error to LOG_FD, referencing LINENO. Then exit the
+# script with STATUS, using 1 if that was 0.
+as_fn_error ()
+{
+ as_status=$1; test $as_status -eq 0 && as_status=1
+ if test "$4"; then
+ as_lineno=${as_lineno-"$3"} as_lineno_stack=as_lineno_stack=$as_lineno_stack
+ $as_echo "$as_me:${as_lineno-$LINENO}: error: $2" >&$4
+ fi
+ $as_echo "$as_me: error: $2" >&2
+ as_fn_exit $as_status
+} # as_fn_error
-exitcode=0
-if as_func_success; then
- :
+if expr a : '\(a\)' >/dev/null 2>&1 &&
+ test "X`expr 00001 : '.*\(...\)'`" = X001; then
+ as_expr=expr
else
- exitcode=1
- echo as_func_success failed.
-fi
-
-if as_func_failure; then
- exitcode=1
- echo as_func_failure succeeded.
+ as_expr=false
fi
-if as_func_ret_success; then
- :
+if (basename -- /) >/dev/null 2>&1 && test "X`basename -- / 2>&1`" = "X/"; then
+ as_basename=basename
else
- exitcode=1
- echo as_func_ret_success failed.
-fi
-
-if as_func_ret_failure; then
- exitcode=1
- echo as_func_ret_failure succeeded.
+ as_basename=false
fi
-if ( set x; as_func_ret_success y && test x = \"\$1\" ); then
- :
+if (as_dir=`dirname -- /` && test "X$as_dir" = X/) >/dev/null 2>&1; then
+ as_dirname=dirname
else
- exitcode=1
- echo positional parameters were not saved.
+ as_dirname=false
fi
-test \$exitcode = 0") || {
- echo No shell found that supports shell functions.
- echo Please tell bug-autoconf at gnu.org about your system,
- echo including any error possibly output before this message.
- echo This can help us improve future autoconf versions.
- echo Configuration will now proceed without shell functions.
-}
-
+as_me=`$as_basename -- "$0" ||
+$as_expr X/"$0" : '.*/\([^/][^/]*\)/*$' \| \
+ X"$0" : 'X\(//\)$' \| \
+ X"$0" : 'X\(/\)' \| . 2>/dev/null ||
+$as_echo X/"$0" |
+ sed '/^.*\/\([^/][^/]*\)\/*$/{
+ s//\1/
+ q
+ }
+ /^X\/\(\/\/\)$/{
+ s//\1/
+ q
+ }
+ /^X\/\(\/\).*/{
+ s//\1/
+ q
+ }
+ s/.*/./; q'`
+# Avoid depending upon Character Ranges.
+as_cr_letters='abcdefghijklmnopqrstuvwxyz'
+as_cr_LETTERS='ABCDEFGHIJKLMNOPQRSTUVWXYZ'
+as_cr_Letters=$as_cr_letters$as_cr_LETTERS
+as_cr_digits='0123456789'
+as_cr_alnum=$as_cr_Letters$as_cr_digits
- as_lineno_1=$LINENO
- as_lineno_2=$LINENO
- test "x$as_lineno_1" != "x$as_lineno_2" &&
- test "x`expr $as_lineno_1 + 1`" = "x$as_lineno_2" || {
- # Create $as_me.lineno as a copy of $as_myself, but with $LINENO
- # uniformly replaced by the line number. The first 'sed' inserts a
- # line-number line after each line using $LINENO; the second 'sed'
- # does the real work. The second script uses 'N' to pair each
- # line-number line with the line containing $LINENO, and appends
- # trailing '-' during substitution so that $LINENO is not a special
- # case at line end.
- # (Raja R Harinath suggested sed '=', and Paul Eggert wrote the
- # scripts with optimization help from Paolo Bonzini. Blame Lee
- # E. McMahon (1931-1989) for sed's syntax. :-)
+ as_lineno_1=$LINENO as_lineno_1a=$LINENO
+ as_lineno_2=$LINENO as_lineno_2a=$LINENO
+ eval 'test "x$as_lineno_1'$as_run'" != "x$as_lineno_2'$as_run'" &&
+ test "x`expr $as_lineno_1'$as_run' + 1`" = "x$as_lineno_2'$as_run'"' || {
+ # Blame Lee E. McMahon (1931-1989) for sed's syntax. :-)
sed -n '
p
/[$]LINENO/=
@@ -471,9 +483,12 @@ test \$exitcode = 0") || {
s/-\n.*//
' >$as_me.lineno &&
chmod +x "$as_me.lineno" ||
- { $as_echo "$as_me: error: cannot create $as_me.lineno; rerun with a POSIX shell" >&2
- { (exit 1); exit 1; }; }
+ { $as_echo "$as_me: error: cannot create $as_me.lineno; rerun with a POSIX shell" >&2; as_fn_exit 1; }
+ # If we had to re-execute with $CONFIG_SHELL, we're ensured to have
+ # already done that, so ensure we don't try to do so again and fall
+ # in an infinite loop. This has already happened in practice.
+ _as_can_reexec=no; export _as_can_reexec
# Don't try to exec as it changes $[0], causing all sort of problems
# (the dirname of $[0] is not the place where we might find the
# original and so on. Autoconf is especially sensitive to this).
@@ -482,29 +497,18 @@ test \$exitcode = 0") || {
exit
}
-
-if (as_dir=`dirname -- /` && test "X$as_dir" = X/) >/dev/null 2>&1; then
- as_dirname=dirname
-else
- as_dirname=false
-fi
-
ECHO_C= ECHO_N= ECHO_T=
-case `echo -n x` in
+case `echo -n x` in #(((((
-n*)
- case `echo 'x\c'` in
+ case `echo 'xy\c'` in
*c*) ECHO_T=' ';; # ECHO_T is single tab character.
- *) ECHO_C='\c';;
+ xy) ECHO_C='\c';;
+ *) echo `echo ksh88 bug on AIX 6.1` > /dev/null
+ ECHO_T=' ';;
esac;;
*)
ECHO_N='-n';;
esac
-if expr a : '\(a\)' >/dev/null 2>&1 &&
- test "X`expr 00001 : '.*\(...\)'`" = X001; then
- as_expr=expr
-else
- as_expr=false
-fi
rm -f conf$$ conf$$.exe conf$$.file
if test -d conf$$.dir; then
@@ -519,49 +523,29 @@ if (echo >conf$$.file) 2>/dev/null; then
# ... but there are two gotchas:
# 1) On MSYS, both `ln -s file dir' and `ln file dir' fail.
# 2) DJGPP < 2.04 has no symlinks; `ln -s' creates a wrapper executable.
- # In both cases, we have to default to `cp -p'.
+ # In both cases, we have to default to `cp -pR'.
ln -s conf$$.file conf$$.dir 2>/dev/null && test ! -f conf$$.exe ||
- as_ln_s='cp -p'
+ as_ln_s='cp -pR'
elif ln conf$$.file conf$$ 2>/dev/null; then
as_ln_s=ln
else
- as_ln_s='cp -p'
+ as_ln_s='cp -pR'
fi
else
- as_ln_s='cp -p'
+ as_ln_s='cp -pR'
fi
rm -f conf$$ conf$$.exe conf$$.dir/conf$$.file conf$$.file
rmdir conf$$.dir 2>/dev/null
if mkdir -p . 2>/dev/null; then
- as_mkdir_p=:
+ as_mkdir_p='mkdir -p "$as_dir"'
else
test -d ./-p && rmdir ./-p
as_mkdir_p=false
fi
-if test -x / >/dev/null 2>&1; then
- as_test_x='test -x'
-else
- if ls -dL / >/dev/null 2>&1; then
- as_ls_L_option=L
- else
- as_ls_L_option=
- fi
- as_test_x='
- eval sh -c '\''
- if test -d "$1"; then
- test -d "$1/.";
- else
- case $1 in
- -*)set "./$1";;
- esac;
- case `ls -ld'$as_ls_L_option' "$1" 2>/dev/null` in
- ???[sx]*):;;*)false;;esac;fi
- '\'' sh
- '
-fi
-as_executable_p=$as_test_x
+as_test_x='test -x'
+as_executable_p=as_fn_executable_p
# Sed expression to map a string onto a valid CPP name.
as_tr_cpp="eval sed 'y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g'"
@@ -570,11 +554,11 @@ as_tr_cpp="eval sed 'y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g'"
as_tr_sh="eval sed 'y%*+%pp%;s%[^_$as_cr_alnum]%_%g'"
-
-exec 7<&0 </dev/null 6>&1
+test -n "$DJDIR" || exec 7<&0 </dev/null
+exec 6>&1
# Name of the host.
-# hostname on some systems (SVR3.2, Linux) returns a bogus exit status,
+# hostname on some systems (SVR3.2, old GNU/Linux) returns a bogus exit status,
# so uname gets run too.
ac_hostname=`(hostname || uname -n) 2>/dev/null | sed 1q`
@@ -589,7 +573,6 @@ cross_compiling=no
subdirs=
MFLAGS=
MAKEFLAGS=
-SHELL=${CONFIG_SHELL-/bin/sh}
# Identity of this package.
PACKAGE_NAME=
@@ -597,6 +580,7 @@ PACKAGE_TARNAME=
PACKAGE_VERSION=
PACKAGE_STRING=
PACKAGE_BUGREPORT=
+PACKAGE_URL=
ac_unique_file=""DESCRIPTION""
# Factoring default headers for most tests.
@@ -677,6 +661,7 @@ bindir
program_transform_name
prefix
exec_prefix
+PACKAGE_URL
PACKAGE_BUGREPORT
PACKAGE_STRING
PACKAGE_VERSION
@@ -687,6 +672,7 @@ SHELL'
ac_subst_files=''
ac_user_opts='
enable_option_checking
+enable_threading
'
ac_precious_vars='build_alias
host_alias
@@ -759,8 +745,9 @@ do
fi
case $ac_option in
- *=*) ac_optarg=`expr "X$ac_option" : '[^=]*=\(.*\)'` ;;
- *) ac_optarg=yes ;;
+ *=?*) ac_optarg=`expr "X$ac_option" : '[^=]*=\(.*\)'` ;;
+ *=) ac_optarg= ;;
+ *) ac_optarg=yes ;;
esac
# Accept the important Cygnus configure options, so we can diagnose typos.
@@ -805,8 +792,7 @@ do
ac_useropt=`expr "x$ac_option" : 'x-*disable-\(.*\)'`
# Reject names that are not valid shell variable names.
expr "x$ac_useropt" : ".*[^-+._$as_cr_alnum]" >/dev/null &&
- { $as_echo "$as_me: error: invalid feature name: $ac_useropt" >&2
- { (exit 1); exit 1; }; }
+ as_fn_error $? "invalid feature name: $ac_useropt"
ac_useropt_orig=$ac_useropt
ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
case $ac_user_opts in
@@ -832,8 +818,7 @@ do
ac_useropt=`expr "x$ac_option" : 'x-*enable-\([^=]*\)'`
# Reject names that are not valid shell variable names.
expr "x$ac_useropt" : ".*[^-+._$as_cr_alnum]" >/dev/null &&
- { $as_echo "$as_me: error: invalid feature name: $ac_useropt" >&2
- { (exit 1); exit 1; }; }
+ as_fn_error $? "invalid feature name: $ac_useropt"
ac_useropt_orig=$ac_useropt
ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
case $ac_user_opts in
@@ -1037,8 +1022,7 @@ do
ac_useropt=`expr "x$ac_option" : 'x-*with-\([^=]*\)'`
# Reject names that are not valid shell variable names.
expr "x$ac_useropt" : ".*[^-+._$as_cr_alnum]" >/dev/null &&
- { $as_echo "$as_me: error: invalid package name: $ac_useropt" >&2
- { (exit 1); exit 1; }; }
+ as_fn_error $? "invalid package name: $ac_useropt"
ac_useropt_orig=$ac_useropt
ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
case $ac_user_opts in
@@ -1054,8 +1038,7 @@ do
ac_useropt=`expr "x$ac_option" : 'x-*without-\(.*\)'`
# Reject names that are not valid shell variable names.
expr "x$ac_useropt" : ".*[^-+._$as_cr_alnum]" >/dev/null &&
- { $as_echo "$as_me: error: invalid package name: $ac_useropt" >&2
- { (exit 1); exit 1; }; }
+ as_fn_error $? "invalid package name: $ac_useropt"
ac_useropt_orig=$ac_useropt
ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
case $ac_user_opts in
@@ -1085,17 +1068,17 @@ do
| --x-librar=* | --x-libra=* | --x-libr=* | --x-lib=* | --x-li=* | --x-l=*)
x_libraries=$ac_optarg ;;
- -*) { $as_echo "$as_me: error: unrecognized option: $ac_option
-Try \`$0 --help' for more information." >&2
- { (exit 1); exit 1; }; }
+ -*) as_fn_error $? "unrecognized option: \`$ac_option'
+Try \`$0 --help' for more information"
;;
*=*)
ac_envvar=`expr "x$ac_option" : 'x\([^=]*\)='`
# Reject names that are not valid shell variable names.
- expr "x$ac_envvar" : ".*[^_$as_cr_alnum]" >/dev/null &&
- { $as_echo "$as_me: error: invalid variable name: $ac_envvar" >&2
- { (exit 1); exit 1; }; }
+ case $ac_envvar in #(
+ '' | [0-9]* | *[!_$as_cr_alnum]* )
+ as_fn_error $? "invalid variable name: \`$ac_envvar'" ;;
+ esac
eval $ac_envvar=\$ac_optarg
export $ac_envvar ;;
@@ -1104,7 +1087,7 @@ Try \`$0 --help' for more information." >&2
$as_echo "$as_me: WARNING: you should use --build, --host, --target" >&2
expr "x$ac_option" : ".*[^-._$as_cr_alnum]" >/dev/null &&
$as_echo "$as_me: WARNING: invalid host type: $ac_option" >&2
- : ${build_alias=$ac_option} ${host_alias=$ac_option} ${target_alias=$ac_option}
+ : "${build_alias=$ac_option} ${host_alias=$ac_option} ${target_alias=$ac_option}"
;;
esac
@@ -1112,15 +1095,13 @@ done
if test -n "$ac_prev"; then
ac_option=--`echo $ac_prev | sed 's/_/-/g'`
- { $as_echo "$as_me: error: missing argument to $ac_option" >&2
- { (exit 1); exit 1; }; }
+ as_fn_error $? "missing argument to $ac_option"
fi
if test -n "$ac_unrecognized_opts"; then
case $enable_option_checking in
no) ;;
- fatal) { $as_echo "$as_me: error: unrecognized options: $ac_unrecognized_opts" >&2
- { (exit 1); exit 1; }; } ;;
+ fatal) as_fn_error $? "unrecognized options: $ac_unrecognized_opts" ;;
*) $as_echo "$as_me: WARNING: unrecognized options: $ac_unrecognized_opts" >&2 ;;
esac
fi
@@ -1143,8 +1124,7 @@ do
[\\/$]* | ?:[\\/]* ) continue;;
NONE | '' ) case $ac_var in *prefix ) continue;; esac;;
esac
- { $as_echo "$as_me: error: expected an absolute directory name for --$ac_var: $ac_val" >&2
- { (exit 1); exit 1; }; }
+ as_fn_error $? "expected an absolute directory name for --$ac_var: $ac_val"
done
# There might be people who depend on the old broken behavior: `$host'
@@ -1158,8 +1138,6 @@ target=$target_alias
if test "x$host_alias" != x; then
if test "x$build_alias" = x; then
cross_compiling=maybe
- $as_echo "$as_me: WARNING: If you wanted to set the --build type, don't use --host.
- If a cross compiler is detected then cross compile mode will be used." >&2
elif test "x$build_alias" != "x$host_alias"; then
cross_compiling=yes
fi
@@ -1174,11 +1152,9 @@ test "$silent" = yes && exec 6>/dev/null
ac_pwd=`pwd` && test -n "$ac_pwd" &&
ac_ls_di=`ls -di .` &&
ac_pwd_ls_di=`cd "$ac_pwd" && ls -di .` ||
- { $as_echo "$as_me: error: working directory cannot be determined" >&2
- { (exit 1); exit 1; }; }
+ as_fn_error $? "working directory cannot be determined"
test "X$ac_ls_di" = "X$ac_pwd_ls_di" ||
- { $as_echo "$as_me: error: pwd does not report name of working directory" >&2
- { (exit 1); exit 1; }; }
+ as_fn_error $? "pwd does not report name of working directory"
# Find the source files, if location was not specified.
@@ -1217,13 +1193,11 @@ else
fi
if test ! -r "$srcdir/$ac_unique_file"; then
test "$ac_srcdir_defaulted" = yes && srcdir="$ac_confdir or .."
- { $as_echo "$as_me: error: cannot find sources ($ac_unique_file) in $srcdir" >&2
- { (exit 1); exit 1; }; }
+ as_fn_error $? "cannot find sources ($ac_unique_file) in $srcdir"
fi
ac_msg="sources are in $srcdir, but \`cd $srcdir' does not work"
ac_abs_confdir=`(
- cd "$srcdir" && test -r "./$ac_unique_file" || { $as_echo "$as_me: error: $ac_msg" >&2
- { (exit 1); exit 1; }; }
+ cd "$srcdir" && test -r "./$ac_unique_file" || as_fn_error $? "$ac_msg"
pwd)`
# When building in place, set srcdir=.
if test "$ac_abs_confdir" = "$ac_pwd"; then
@@ -1263,7 +1237,7 @@ Configuration:
--help=short display options specific to this package
--help=recursive display the short help of all the included packages
-V, --version display version information and exit
- -q, --quiet, --silent do not print \`checking...' messages
+ -q, --quiet, --silent do not print \`checking ...' messages
--cache-file=FILE cache test results in FILE [disabled]
-C, --config-cache alias for \`--cache-file=config.cache'
-n, --no-create do not create output files
@@ -1312,19 +1286,26 @@ if test -n "$ac_init_help"; then
cat <<\_ACEOF
+Optional Features:
+ --disable-option-checking ignore unrecognized --enable/--with options
+ --disable-FEATURE do not include FEATURE (same as --enable-FEATURE=no)
+ --enable-FEATURE[=ARG] include FEATURE [ARG=yes]
+ --disable-threading Disable threading
+
Some influential environment variables:
CC C compiler command
CFLAGS C compiler flags
LDFLAGS linker flags, e.g. -L<lib dir> if you have libraries in a
nonstandard directory <lib dir>
LIBS libraries to pass to the linker, e.g. -l<library>
- CPPFLAGS C/C++/Objective C preprocessor flags, e.g. -I<include dir> if
+ CPPFLAGS (Objective) C/C++ preprocessor flags, e.g. -I<include dir> if
you have headers in a nonstandard directory <include dir>
CPP C preprocessor
Use these variables to override the choices made by `configure' or to help
it to find libraries and programs with nonstandard names/locations.
+Report bugs to the package provider.
_ACEOF
ac_status=$?
fi
@@ -1367,42 +1348,326 @@ case $srcdir in
ac_top_srcdir=$ac_top_build_prefix$srcdir
ac_abs_top_srcdir=$ac_pwd/$srcdir ;;
esac
-ac_abs_srcdir=$ac_abs_top_srcdir$ac_dir_suffix
+ac_abs_srcdir=$ac_abs_top_srcdir$ac_dir_suffix
+
+ cd "$ac_dir" || { ac_status=$?; continue; }
+ # Check for guested configure.
+ if test -f "$ac_srcdir/configure.gnu"; then
+ echo &&
+ $SHELL "$ac_srcdir/configure.gnu" --help=recursive
+ elif test -f "$ac_srcdir/configure"; then
+ echo &&
+ $SHELL "$ac_srcdir/configure" --help=recursive
+ else
+ $as_echo "$as_me: WARNING: no configuration information is in $ac_dir" >&2
+ fi || ac_status=$?
+ cd "$ac_pwd" || { ac_status=$?; break; }
+ done
+fi
+
+test -n "$ac_init_help" && exit $ac_status
+if $ac_init_version; then
+ cat <<\_ACEOF
+configure
+generated by GNU Autoconf 2.69
+
+Copyright (C) 2012 Free Software Foundation, Inc.
+This configure script is free software; the Free Software Foundation
+gives unlimited permission to copy, distribute and modify it.
+_ACEOF
+ exit
+fi
+
+## ------------------------ ##
+## Autoconf initialization. ##
+## ------------------------ ##
+
+# ac_fn_c_try_compile LINENO
+# --------------------------
+# Try to compile conftest.$ac_ext, and return whether this succeeded.
+ac_fn_c_try_compile ()
+{
+ as_lineno=${as_lineno-"$1"} as_lineno_stack=as_lineno_stack=$as_lineno_stack
+ rm -f conftest.$ac_objext
+ if { { ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""
+$as_echo "$ac_try_echo"; } >&5
+ (eval "$ac_compile") 2>conftest.err
+ ac_status=$?
+ if test -s conftest.err; then
+ grep -v '^ *+' conftest.err >conftest.er1
+ cat conftest.er1 >&5
+ mv -f conftest.er1 conftest.err
+ fi
+ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
+ test $ac_status = 0; } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then :
+ ac_retval=0
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_retval=1
+fi
+ eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno
+ as_fn_set_status $ac_retval
+
+} # ac_fn_c_try_compile
+
+# ac_fn_c_try_link LINENO
+# -----------------------
+# Try to link conftest.$ac_ext, and return whether this succeeded.
+ac_fn_c_try_link ()
+{
+ as_lineno=${as_lineno-"$1"} as_lineno_stack=as_lineno_stack=$as_lineno_stack
+ rm -f conftest.$ac_objext conftest$ac_exeext
+ if { { ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""
+$as_echo "$ac_try_echo"; } >&5
+ (eval "$ac_link") 2>conftest.err
+ ac_status=$?
+ if test -s conftest.err; then
+ grep -v '^ *+' conftest.err >conftest.er1
+ cat conftest.er1 >&5
+ mv -f conftest.er1 conftest.err
+ fi
+ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
+ test $ac_status = 0; } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ test -x conftest$ac_exeext
+ }; then :
+ ac_retval=0
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_retval=1
+fi
+ # Delete the IPA/IPO (Inter Procedural Analysis/Optimization) information
+ # created by the PGI compiler (conftest_ipa8_conftest.oo), as it would
+ # interfere with the next link command; also delete a directory that is
+ # left behind by Apple's compiler. We do this before executing the actions.
+ rm -rf conftest.dSYM conftest_ipa8_conftest.oo
+ eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno
+ as_fn_set_status $ac_retval
+
+} # ac_fn_c_try_link
+
+# ac_fn_c_try_cpp LINENO
+# ----------------------
+# Try to preprocess conftest.$ac_ext, and return whether this succeeded.
+ac_fn_c_try_cpp ()
+{
+ as_lineno=${as_lineno-"$1"} as_lineno_stack=as_lineno_stack=$as_lineno_stack
+ if { { ac_try="$ac_cpp conftest.$ac_ext"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""
+$as_echo "$ac_try_echo"; } >&5
+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.err
+ ac_status=$?
+ if test -s conftest.err; then
+ grep -v '^ *+' conftest.err >conftest.er1
+ cat conftest.er1 >&5
+ mv -f conftest.er1 conftest.err
+ fi
+ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
+ test $ac_status = 0; } > conftest.i && {
+ test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ }; then :
+ ac_retval=0
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_retval=1
+fi
+ eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno
+ as_fn_set_status $ac_retval
+
+} # ac_fn_c_try_cpp
+
+# ac_fn_c_check_header_mongrel LINENO HEADER VAR INCLUDES
+# -------------------------------------------------------
+# Tests whether HEADER exists, giving a warning if it cannot be compiled using
+# the include files in INCLUDES and setting the cache variable VAR
+# accordingly.
+ac_fn_c_check_header_mongrel ()
+{
+ as_lineno=${as_lineno-"$1"} as_lineno_stack=as_lineno_stack=$as_lineno_stack
+ if eval \${$3+:} false; then :
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $2" >&5
+$as_echo_n "checking for $2... " >&6; }
+if eval \${$3+:} false; then :
+ $as_echo_n "(cached) " >&6
+fi
+eval ac_res=\$$3
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+else
+ # Is the header compilable?
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking $2 usability" >&5
+$as_echo_n "checking $2 usability... " >&6; }
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+$4
+#include <$2>
+_ACEOF
+if ac_fn_c_try_compile "$LINENO"; then :
+ ac_header_compiler=yes
+else
+ ac_header_compiler=no
+fi
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_header_compiler" >&5
+$as_echo "$ac_header_compiler" >&6; }
+
+# Is the header present?
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking $2 presence" >&5
+$as_echo_n "checking $2 presence... " >&6; }
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+#include <$2>
+_ACEOF
+if ac_fn_c_try_cpp "$LINENO"; then :
+ ac_header_preproc=yes
+else
+ ac_header_preproc=no
+fi
+rm -f conftest.err conftest.i conftest.$ac_ext
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_header_preproc" >&5
+$as_echo "$ac_header_preproc" >&6; }
+
+# So? What about this header?
+case $ac_header_compiler:$ac_header_preproc:$ac_c_preproc_warn_flag in #((
+ yes:no: )
+ { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: $2: accepted by the compiler, rejected by the preprocessor!" >&5
+$as_echo "$as_me: WARNING: $2: accepted by the compiler, rejected by the preprocessor!" >&2;}
+ { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: $2: proceeding with the compiler's result" >&5
+$as_echo "$as_me: WARNING: $2: proceeding with the compiler's result" >&2;}
+ ;;
+ no:yes:* )
+ { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: $2: present but cannot be compiled" >&5
+$as_echo "$as_me: WARNING: $2: present but cannot be compiled" >&2;}
+ { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: $2: check for missing prerequisite headers?" >&5
+$as_echo "$as_me: WARNING: $2: check for missing prerequisite headers?" >&2;}
+ { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: $2: see the Autoconf documentation" >&5
+$as_echo "$as_me: WARNING: $2: see the Autoconf documentation" >&2;}
+ { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: $2: section \"Present But Cannot Be Compiled\"" >&5
+$as_echo "$as_me: WARNING: $2: section \"Present But Cannot Be Compiled\"" >&2;}
+ { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: $2: proceeding with the compiler's result" >&5
+$as_echo "$as_me: WARNING: $2: proceeding with the compiler's result" >&2;}
+ ;;
+esac
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $2" >&5
+$as_echo_n "checking for $2... " >&6; }
+if eval \${$3+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ eval "$3=\$ac_header_compiler"
+fi
+eval ac_res=\$$3
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+fi
+ eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno
+
+} # ac_fn_c_check_header_mongrel
+
+# ac_fn_c_try_run LINENO
+# ----------------------
+# Try to link conftest.$ac_ext, and return whether this succeeded. Assumes
+# that executables *can* be run.
+ac_fn_c_try_run ()
+{
+ as_lineno=${as_lineno-"$1"} as_lineno_stack=as_lineno_stack=$as_lineno_stack
+ if { { ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""
+$as_echo "$ac_try_echo"; } >&5
+ (eval "$ac_link") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
+ test $ac_status = 0; } && { ac_try='./conftest$ac_exeext'
+ { { case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""
+$as_echo "$ac_try_echo"; } >&5
+ (eval "$ac_try") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
+ test $ac_status = 0; }; }; then :
+ ac_retval=0
+else
+ $as_echo "$as_me: program exited with status $ac_status" >&5
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
- cd "$ac_dir" || { ac_status=$?; continue; }
- # Check for guested configure.
- if test -f "$ac_srcdir/configure.gnu"; then
- echo &&
- $SHELL "$ac_srcdir/configure.gnu" --help=recursive
- elif test -f "$ac_srcdir/configure"; then
- echo &&
- $SHELL "$ac_srcdir/configure" --help=recursive
- else
- $as_echo "$as_me: WARNING: no configuration information is in $ac_dir" >&2
- fi || ac_status=$?
- cd "$ac_pwd" || { ac_status=$?; break; }
- done
+ ac_retval=$ac_status
fi
+ rm -rf conftest.dSYM conftest_ipa8_conftest.oo
+ eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno
+ as_fn_set_status $ac_retval
-test -n "$ac_init_help" && exit $ac_status
-if $ac_init_version; then
- cat <<\_ACEOF
-configure
-generated by GNU Autoconf 2.63
+} # ac_fn_c_try_run
-Copyright (C) 1992, 1993, 1994, 1995, 1996, 1998, 1999, 2000, 2001,
-2002, 2003, 2004, 2005, 2006, 2007, 2008 Free Software Foundation, Inc.
-This configure script is free software; the Free Software Foundation
-gives unlimited permission to copy, distribute and modify it.
+# ac_fn_c_check_header_compile LINENO HEADER VAR INCLUDES
+# -------------------------------------------------------
+# Tests whether HEADER exists and can be compiled using the include files in
+# INCLUDES, setting the cache variable VAR accordingly.
+ac_fn_c_check_header_compile ()
+{
+ as_lineno=${as_lineno-"$1"} as_lineno_stack=as_lineno_stack=$as_lineno_stack
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $2" >&5
+$as_echo_n "checking for $2... " >&6; }
+if eval \${$3+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+$4
+#include <$2>
_ACEOF
- exit
+if ac_fn_c_try_compile "$LINENO"; then :
+ eval "$3=yes"
+else
+ eval "$3=no"
+fi
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
fi
+eval ac_res=\$$3
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+ eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno
+
+} # ac_fn_c_check_header_compile
cat >config.log <<_ACEOF
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by $as_me, which was
-generated by GNU Autoconf 2.63. Invocation command line was
+generated by GNU Autoconf 2.69. Invocation command line was
$ $0 $@
@@ -1438,8 +1703,8 @@ for as_dir in $PATH
do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
- $as_echo "PATH: $as_dir"
-done
+ $as_echo "PATH: $as_dir"
+ done
IFS=$as_save_IFS
} >&5
@@ -1476,9 +1741,9 @@ do
ac_arg=`$as_echo "$ac_arg" | sed "s/'/'\\\\\\\\''/g"` ;;
esac
case $ac_pass in
- 1) ac_configure_args0="$ac_configure_args0 '$ac_arg'" ;;
+ 1) as_fn_append ac_configure_args0 " '$ac_arg'" ;;
2)
- ac_configure_args1="$ac_configure_args1 '$ac_arg'"
+ as_fn_append ac_configure_args1 " '$ac_arg'"
if test $ac_must_keep_next = true; then
ac_must_keep_next=false # Got value, back to normal.
else
@@ -1494,13 +1759,13 @@ do
-* ) ac_must_keep_next=true ;;
esac
fi
- ac_configure_args="$ac_configure_args '$ac_arg'"
+ as_fn_append ac_configure_args " '$ac_arg'"
;;
esac
done
done
-$as_unset ac_configure_args0 || test "${ac_configure_args0+set}" != set || { ac_configure_args0=; export ac_configure_args0; }
-$as_unset ac_configure_args1 || test "${ac_configure_args1+set}" != set || { ac_configure_args1=; export ac_configure_args1; }
+{ ac_configure_args0=; unset ac_configure_args0;}
+{ ac_configure_args1=; unset ac_configure_args1;}
# When interrupted or exit'd, cleanup temporary files, and complete
# config.log. We remove comments because anyway the quotes in there
@@ -1512,11 +1777,9 @@ trap 'exit_status=$?
{
echo
- cat <<\_ASBOX
-## ---------------- ##
+ $as_echo "## ---------------- ##
## Cache variables. ##
-## ---------------- ##
-_ASBOX
+## ---------------- ##"
echo
# The following way of writing the cache mishandles newlines in values,
(
@@ -1525,13 +1788,13 @@ _ASBOX
case $ac_val in #(
*${as_nl}*)
case $ac_var in #(
- *_cv_*) { $as_echo "$as_me:$LINENO: WARNING: cache variable $ac_var contains a newline" >&5
+ *_cv_*) { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: cache variable $ac_var contains a newline" >&5
$as_echo "$as_me: WARNING: cache variable $ac_var contains a newline" >&2;} ;;
esac
case $ac_var in #(
_ | IFS | as_nl) ;; #(
BASH_ARGV | BASH_SOURCE) eval $ac_var= ;; #(
- *) $as_unset $ac_var ;;
+ *) { eval $ac_var=; unset $ac_var;} ;;
esac ;;
esac
done
@@ -1550,11 +1813,9 @@ $as_echo "$as_me: WARNING: cache variable $ac_var contains a newline" >&2;} ;;
)
echo
- cat <<\_ASBOX
-## ----------------- ##
+ $as_echo "## ----------------- ##
## Output variables. ##
-## ----------------- ##
-_ASBOX
+## ----------------- ##"
echo
for ac_var in $ac_subst_vars
do
@@ -1567,11 +1828,9 @@ _ASBOX
echo
if test -n "$ac_subst_files"; then
- cat <<\_ASBOX
-## ------------------- ##
+ $as_echo "## ------------------- ##
## File substitutions. ##
-## ------------------- ##
-_ASBOX
+## ------------------- ##"
echo
for ac_var in $ac_subst_files
do
@@ -1585,11 +1844,9 @@ _ASBOX
fi
if test -s confdefs.h; then
- cat <<\_ASBOX
-## ----------- ##
+ $as_echo "## ----------- ##
## confdefs.h. ##
-## ----------- ##
-_ASBOX
+## ----------- ##"
echo
cat confdefs.h
echo
@@ -1603,46 +1860,53 @@ _ASBOX
exit $exit_status
' 0
for ac_signal in 1 2 13 15; do
- trap 'ac_signal='$ac_signal'; { (exit 1); exit 1; }' $ac_signal
+ trap 'ac_signal='$ac_signal'; as_fn_exit 1' $ac_signal
done
ac_signal=0
# confdefs.h avoids OS command line length limits that DEFS can exceed.
rm -f -r conftest* confdefs.h
+$as_echo "/* confdefs.h */" > confdefs.h
+
# Predefined preprocessor variables.
cat >>confdefs.h <<_ACEOF
#define PACKAGE_NAME "$PACKAGE_NAME"
_ACEOF
-
cat >>confdefs.h <<_ACEOF
#define PACKAGE_TARNAME "$PACKAGE_TARNAME"
_ACEOF
-
cat >>confdefs.h <<_ACEOF
#define PACKAGE_VERSION "$PACKAGE_VERSION"
_ACEOF
-
cat >>confdefs.h <<_ACEOF
#define PACKAGE_STRING "$PACKAGE_STRING"
_ACEOF
-
cat >>confdefs.h <<_ACEOF
#define PACKAGE_BUGREPORT "$PACKAGE_BUGREPORT"
_ACEOF
+cat >>confdefs.h <<_ACEOF
+#define PACKAGE_URL "$PACKAGE_URL"
+_ACEOF
+
# Let the site file select an alternate cache file if it wants to.
# Prefer an explicitly selected file to automatically selected ones.
ac_site_file1=NONE
ac_site_file2=NONE
if test -n "$CONFIG_SITE"; then
- ac_site_file1=$CONFIG_SITE
+ # We do not want a PATH search for config.site.
+ case $CONFIG_SITE in #((
+ -*) ac_site_file1=./$CONFIG_SITE;;
+ */*) ac_site_file1=$CONFIG_SITE;;
+ *) ac_site_file1=./$CONFIG_SITE;;
+ esac
elif test "x$prefix" != xNONE; then
ac_site_file1=$prefix/share/config.site
ac_site_file2=$prefix/etc/config.site
@@ -1653,19 +1917,23 @@ fi
for ac_site_file in "$ac_site_file1" "$ac_site_file2"
do
test "x$ac_site_file" = xNONE && continue
- if test -r "$ac_site_file"; then
- { $as_echo "$as_me:$LINENO: loading site script $ac_site_file" >&5
+ if test /dev/null != "$ac_site_file" && test -r "$ac_site_file"; then
+ { $as_echo "$as_me:${as_lineno-$LINENO}: loading site script $ac_site_file" >&5
$as_echo "$as_me: loading site script $ac_site_file" >&6;}
sed 's/^/| /' "$ac_site_file" >&5
- . "$ac_site_file"
+ . "$ac_site_file" \
+ || { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
+$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
+as_fn_error $? "failed to load site script $ac_site_file
+See \`config.log' for more details" "$LINENO" 5; }
fi
done
if test -r "$cache_file"; then
- # Some versions of bash will fail to source /dev/null (special
- # files actually), so we avoid doing that.
- if test -f "$cache_file"; then
- { $as_echo "$as_me:$LINENO: loading cache $cache_file" >&5
+ # Some versions of bash will fail to source /dev/null (special files
+ # actually), so we avoid doing that. DJGPP emulates it as a regular file.
+ if test /dev/null != "$cache_file" && test -f "$cache_file"; then
+ { $as_echo "$as_me:${as_lineno-$LINENO}: loading cache $cache_file" >&5
$as_echo "$as_me: loading cache $cache_file" >&6;}
case $cache_file in
[\\/]* | ?:[\\/]* ) . "$cache_file";;
@@ -1673,7 +1941,7 @@ $as_echo "$as_me: loading cache $cache_file" >&6;}
esac
fi
else
- { $as_echo "$as_me:$LINENO: creating cache $cache_file" >&5
+ { $as_echo "$as_me:${as_lineno-$LINENO}: creating cache $cache_file" >&5
$as_echo "$as_me: creating cache $cache_file" >&6;}
>$cache_file
fi
@@ -1688,11 +1956,11 @@ for ac_var in $ac_precious_vars; do
eval ac_new_val=\$ac_env_${ac_var}_value
case $ac_old_set,$ac_new_set in
set,)
- { $as_echo "$as_me:$LINENO: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&5
+ { $as_echo "$as_me:${as_lineno-$LINENO}: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&5
$as_echo "$as_me: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&2;}
ac_cache_corrupted=: ;;
,set)
- { $as_echo "$as_me:$LINENO: error: \`$ac_var' was not set in the previous run" >&5
+ { $as_echo "$as_me:${as_lineno-$LINENO}: error: \`$ac_var' was not set in the previous run" >&5
$as_echo "$as_me: error: \`$ac_var' was not set in the previous run" >&2;}
ac_cache_corrupted=: ;;
,);;
@@ -1702,17 +1970,17 @@ $as_echo "$as_me: error: \`$ac_var' was not set in the previous run" >&2;}
ac_old_val_w=`echo x $ac_old_val`
ac_new_val_w=`echo x $ac_new_val`
if test "$ac_old_val_w" != "$ac_new_val_w"; then
- { $as_echo "$as_me:$LINENO: error: \`$ac_var' has changed since the previous run:" >&5
+ { $as_echo "$as_me:${as_lineno-$LINENO}: error: \`$ac_var' has changed since the previous run:" >&5
$as_echo "$as_me: error: \`$ac_var' has changed since the previous run:" >&2;}
ac_cache_corrupted=:
else
- { $as_echo "$as_me:$LINENO: warning: ignoring whitespace changes in \`$ac_var' since the previous run:" >&5
+ { $as_echo "$as_me:${as_lineno-$LINENO}: warning: ignoring whitespace changes in \`$ac_var' since the previous run:" >&5
$as_echo "$as_me: warning: ignoring whitespace changes in \`$ac_var' since the previous run:" >&2;}
eval $ac_var=\$ac_old_val
fi
- { $as_echo "$as_me:$LINENO: former value: \`$ac_old_val'" >&5
+ { $as_echo "$as_me:${as_lineno-$LINENO}: former value: \`$ac_old_val'" >&5
$as_echo "$as_me: former value: \`$ac_old_val'" >&2;}
- { $as_echo "$as_me:$LINENO: current value: \`$ac_new_val'" >&5
+ { $as_echo "$as_me:${as_lineno-$LINENO}: current value: \`$ac_new_val'" >&5
$as_echo "$as_me: current value: \`$ac_new_val'" >&2;}
fi;;
esac
@@ -1724,35 +1992,20 @@ $as_echo "$as_me: current value: \`$ac_new_val'" >&2;}
esac
case " $ac_configure_args " in
*" '$ac_arg' "*) ;; # Avoid dups. Use of quotes ensures accuracy.
- *) ac_configure_args="$ac_configure_args '$ac_arg'" ;;
+ *) as_fn_append ac_configure_args " '$ac_arg'" ;;
esac
fi
done
if $ac_cache_corrupted; then
- { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5
+ { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
- { $as_echo "$as_me:$LINENO: error: changes in the environment can compromise the build" >&5
+ { $as_echo "$as_me:${as_lineno-$LINENO}: error: changes in the environment can compromise the build" >&5
$as_echo "$as_me: error: changes in the environment can compromise the build" >&2;}
- { { $as_echo "$as_me:$LINENO: error: run \`make distclean' and/or \`rm $cache_file' and start over" >&5
-$as_echo "$as_me: error: run \`make distclean' and/or \`rm $cache_file' and start over" >&2;}
- { (exit 1); exit 1; }; }
+ as_fn_error $? "run \`make distclean' and/or \`rm $cache_file' and start over" "$LINENO" 5
fi
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+## -------------------- ##
+## Main body of script. ##
+## -------------------- ##
ac_ext=c
ac_cpp='$CPP $CPPFLAGS'
@@ -1772,9 +2025,9 @@ ac_compiler_gnu=$ac_cv_c_compiler_gnu
if test -n "$ac_tool_prefix"; then
# Extract the first word of "${ac_tool_prefix}gcc", so it can be a program name with args.
set dummy ${ac_tool_prefix}gcc; ac_word=$2
-{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
$as_echo_n "checking for $ac_word... " >&6; }
-if test "${ac_cv_prog_CC+set}" = set; then
+if ${ac_cv_prog_CC+:} false; then :
$as_echo_n "(cached) " >&6
else
if test -n "$CC"; then
@@ -1785,24 +2038,24 @@ for as_dir in $PATH
do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
- for ac_exec_ext in '' $ac_executable_extensions; do
- if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
ac_cv_prog_CC="${ac_tool_prefix}gcc"
- $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
fi
done
-done
+ done
IFS=$as_save_IFS
fi
fi
CC=$ac_cv_prog_CC
if test -n "$CC"; then
- { $as_echo "$as_me:$LINENO: result: $CC" >&5
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $CC" >&5
$as_echo "$CC" >&6; }
else
- { $as_echo "$as_me:$LINENO: result: no" >&5
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
$as_echo "no" >&6; }
fi
@@ -1812,9 +2065,9 @@ if test -z "$ac_cv_prog_CC"; then
ac_ct_CC=$CC
# Extract the first word of "gcc", so it can be a program name with args.
set dummy gcc; ac_word=$2
-{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
$as_echo_n "checking for $ac_word... " >&6; }
-if test "${ac_cv_prog_ac_ct_CC+set}" = set; then
+if ${ac_cv_prog_ac_ct_CC+:} false; then :
$as_echo_n "(cached) " >&6
else
if test -n "$ac_ct_CC"; then
@@ -1825,24 +2078,24 @@ for as_dir in $PATH
do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
- for ac_exec_ext in '' $ac_executable_extensions; do
- if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
ac_cv_prog_ac_ct_CC="gcc"
- $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
fi
done
-done
+ done
IFS=$as_save_IFS
fi
fi
ac_ct_CC=$ac_cv_prog_ac_ct_CC
if test -n "$ac_ct_CC"; then
- { $as_echo "$as_me:$LINENO: result: $ac_ct_CC" >&5
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_CC" >&5
$as_echo "$ac_ct_CC" >&6; }
else
- { $as_echo "$as_me:$LINENO: result: no" >&5
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
$as_echo "no" >&6; }
fi
@@ -1851,7 +2104,7 @@ fi
else
case $cross_compiling:$ac_tool_warned in
yes:)
-{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5
+{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5
$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;}
ac_tool_warned=yes ;;
esac
@@ -1865,9 +2118,9 @@ if test -z "$CC"; then
if test -n "$ac_tool_prefix"; then
# Extract the first word of "${ac_tool_prefix}cc", so it can be a program name with args.
set dummy ${ac_tool_prefix}cc; ac_word=$2
-{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
$as_echo_n "checking for $ac_word... " >&6; }
-if test "${ac_cv_prog_CC+set}" = set; then
+if ${ac_cv_prog_CC+:} false; then :
$as_echo_n "(cached) " >&6
else
if test -n "$CC"; then
@@ -1878,24 +2131,24 @@ for as_dir in $PATH
do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
- for ac_exec_ext in '' $ac_executable_extensions; do
- if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
ac_cv_prog_CC="${ac_tool_prefix}cc"
- $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
fi
done
-done
+ done
IFS=$as_save_IFS
fi
fi
CC=$ac_cv_prog_CC
if test -n "$CC"; then
- { $as_echo "$as_me:$LINENO: result: $CC" >&5
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $CC" >&5
$as_echo "$CC" >&6; }
else
- { $as_echo "$as_me:$LINENO: result: no" >&5
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
$as_echo "no" >&6; }
fi
@@ -1905,9 +2158,9 @@ fi
if test -z "$CC"; then
# Extract the first word of "cc", so it can be a program name with args.
set dummy cc; ac_word=$2
-{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
$as_echo_n "checking for $ac_word... " >&6; }
-if test "${ac_cv_prog_CC+set}" = set; then
+if ${ac_cv_prog_CC+:} false; then :
$as_echo_n "(cached) " >&6
else
if test -n "$CC"; then
@@ -1919,18 +2172,18 @@ for as_dir in $PATH
do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
- for ac_exec_ext in '' $ac_executable_extensions; do
- if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
if test "$as_dir/$ac_word$ac_exec_ext" = "/usr/ucb/cc"; then
ac_prog_rejected=yes
continue
fi
ac_cv_prog_CC="cc"
- $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
fi
done
-done
+ done
IFS=$as_save_IFS
if test $ac_prog_rejected = yes; then
@@ -1949,10 +2202,10 @@ fi
fi
CC=$ac_cv_prog_CC
if test -n "$CC"; then
- { $as_echo "$as_me:$LINENO: result: $CC" >&5
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $CC" >&5
$as_echo "$CC" >&6; }
else
- { $as_echo "$as_me:$LINENO: result: no" >&5
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
$as_echo "no" >&6; }
fi
@@ -1964,9 +2217,9 @@ if test -z "$CC"; then
do
# Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args.
set dummy $ac_tool_prefix$ac_prog; ac_word=$2
-{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
$as_echo_n "checking for $ac_word... " >&6; }
-if test "${ac_cv_prog_CC+set}" = set; then
+if ${ac_cv_prog_CC+:} false; then :
$as_echo_n "(cached) " >&6
else
if test -n "$CC"; then
@@ -1977,24 +2230,24 @@ for as_dir in $PATH
do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
- for ac_exec_ext in '' $ac_executable_extensions; do
- if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
ac_cv_prog_CC="$ac_tool_prefix$ac_prog"
- $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
fi
done
-done
+ done
IFS=$as_save_IFS
fi
fi
CC=$ac_cv_prog_CC
if test -n "$CC"; then
- { $as_echo "$as_me:$LINENO: result: $CC" >&5
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $CC" >&5
$as_echo "$CC" >&6; }
else
- { $as_echo "$as_me:$LINENO: result: no" >&5
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
$as_echo "no" >&6; }
fi
@@ -2008,9 +2261,9 @@ if test -z "$CC"; then
do
# Extract the first word of "$ac_prog", so it can be a program name with args.
set dummy $ac_prog; ac_word=$2
-{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
$as_echo_n "checking for $ac_word... " >&6; }
-if test "${ac_cv_prog_ac_ct_CC+set}" = set; then
+if ${ac_cv_prog_ac_ct_CC+:} false; then :
$as_echo_n "(cached) " >&6
else
if test -n "$ac_ct_CC"; then
@@ -2021,24 +2274,24 @@ for as_dir in $PATH
do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
- for ac_exec_ext in '' $ac_executable_extensions; do
- if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
ac_cv_prog_ac_ct_CC="$ac_prog"
- $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
break 2
fi
done
-done
+ done
IFS=$as_save_IFS
fi
fi
ac_ct_CC=$ac_cv_prog_ac_ct_CC
if test -n "$ac_ct_CC"; then
- { $as_echo "$as_me:$LINENO: result: $ac_ct_CC" >&5
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_CC" >&5
$as_echo "$ac_ct_CC" >&6; }
else
- { $as_echo "$as_me:$LINENO: result: no" >&5
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
$as_echo "no" >&6; }
fi
@@ -2051,7 +2304,7 @@ done
else
case $cross_compiling:$ac_tool_warned in
yes:)
-{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5
+{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5
$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;}
ac_tool_warned=yes ;;
esac
@@ -2062,57 +2315,37 @@ fi
fi
-test -z "$CC" && { { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5
+test -z "$CC" && { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
-{ { $as_echo "$as_me:$LINENO: error: no acceptable C compiler found in \$PATH
-See \`config.log' for more details." >&5
-$as_echo "$as_me: error: no acceptable C compiler found in \$PATH
-See \`config.log' for more details." >&2;}
- { (exit 1); exit 1; }; }; }
+as_fn_error $? "no acceptable C compiler found in \$PATH
+See \`config.log' for more details" "$LINENO" 5; }
# Provide some information about the compiler.
-$as_echo "$as_me:$LINENO: checking for C compiler version" >&5
+$as_echo "$as_me:${as_lineno-$LINENO}: checking for C compiler version" >&5
set X $ac_compile
ac_compiler=$2
-{ (ac_try="$ac_compiler --version >&5"
-case "(($ac_try" in
- *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
- *) ac_try_echo=$ac_try;;
-esac
-eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
-$as_echo "$ac_try_echo") >&5
- (eval "$ac_compiler --version >&5") 2>&5
- ac_status=$?
- $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }
-{ (ac_try="$ac_compiler -v >&5"
-case "(($ac_try" in
- *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
- *) ac_try_echo=$ac_try;;
-esac
-eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
-$as_echo "$ac_try_echo") >&5
- (eval "$ac_compiler -v >&5") 2>&5
- ac_status=$?
- $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }
-{ (ac_try="$ac_compiler -V >&5"
+for ac_option in --version -v -V -qversion; do
+ { { ac_try="$ac_compiler $ac_option >&5"
case "(($ac_try" in
*\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
*) ac_try_echo=$ac_try;;
esac
-eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
-$as_echo "$ac_try_echo") >&5
- (eval "$ac_compiler -V >&5") 2>&5
+eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""
+$as_echo "$ac_try_echo"; } >&5
+ (eval "$ac_compiler $ac_option >&5") 2>conftest.err
ac_status=$?
- $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }
+ if test -s conftest.err; then
+ sed '10a\
+... rest of stderr output deleted ...
+ 10q' conftest.err >conftest.er1
+ cat conftest.er1 >&5
+ fi
+ rm -f conftest.er1 conftest.err
+ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
+ test $ac_status = 0; }
+done
-cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h. */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
int
@@ -2128,8 +2361,8 @@ ac_clean_files="$ac_clean_files a.out a.out.dSYM a.exe b.out"
# Try to create an executable without -o first, disregard a.out.
# It will help us diagnose broken compilers, and finding out an intuition
# of exeext.
-{ $as_echo "$as_me:$LINENO: checking for C compiler default output file name" >&5
-$as_echo_n "checking for C compiler default output file name... " >&6; }
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether the C compiler works" >&5
+$as_echo_n "checking whether the C compiler works... " >&6; }
ac_link_default=`$as_echo "$ac_link" | sed 's/ -o *conftest[^ ]*//'`
# The possible output files:
@@ -2145,17 +2378,17 @@ do
done
rm -f $ac_rmfiles
-if { (ac_try="$ac_link_default"
+if { { ac_try="$ac_link_default"
case "(($ac_try" in
*\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
*) ac_try_echo=$ac_try;;
esac
-eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
-$as_echo "$ac_try_echo") >&5
+eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""
+$as_echo "$ac_try_echo"; } >&5
(eval "$ac_link_default") 2>&5
ac_status=$?
- $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; then
+ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
+ test $ac_status = 0; }; then :
# Autoconf-2.13 could set the ac_cv_exeext variable to `no'.
# So ignore a value of `no', otherwise this would lead to `EXEEXT = no'
# in a Makefile. We should not override ac_cv_exeext if it was cached,
@@ -2172,7 +2405,7 @@ do
# certainly right.
break;;
*.* )
- if test "${ac_cv_exeext+set}" = set && test "$ac_cv_exeext" != no;
+ if test "${ac_cv_exeext+set}" = set && test "$ac_cv_exeext" != no;
then :; else
ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
fi
@@ -2191,84 +2424,41 @@ test "$ac_cv_exeext" = no && ac_cv_exeext=
else
ac_file=''
fi
-
-{ $as_echo "$as_me:$LINENO: result: $ac_file" >&5
-$as_echo "$ac_file" >&6; }
-if test -z "$ac_file"; then
- $as_echo "$as_me: failed program was:" >&5
+if test -z "$ac_file"; then :
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
+$as_echo "no" >&6; }
+$as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-{ { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5
+{ { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
-{ { $as_echo "$as_me:$LINENO: error: C compiler cannot create executables
-See \`config.log' for more details." >&5
-$as_echo "$as_me: error: C compiler cannot create executables
-See \`config.log' for more details." >&2;}
- { (exit 77); exit 77; }; }; }
+as_fn_error 77 "C compiler cannot create executables
+See \`config.log' for more details" "$LINENO" 5; }
+else
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5
+$as_echo "yes" >&6; }
fi
-
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for C compiler default output file name" >&5
+$as_echo_n "checking for C compiler default output file name... " >&6; }
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_file" >&5
+$as_echo "$ac_file" >&6; }
ac_exeext=$ac_cv_exeext
-# Check that the compiler produces executables we can run. If not, either
-# the compiler is broken, or we cross compile.
-{ $as_echo "$as_me:$LINENO: checking whether the C compiler works" >&5
-$as_echo_n "checking whether the C compiler works... " >&6; }
-# FIXME: These cross compiler hacks should be removed for Autoconf 3.0
-# If not cross compiling, check that we can run a simple program.
-if test "$cross_compiling" != yes; then
- if { ac_try='./$ac_file'
- { (case "(($ac_try" in
- *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
- *) ac_try_echo=$ac_try;;
-esac
-eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
-$as_echo "$ac_try_echo") >&5
- (eval "$ac_try") 2>&5
- ac_status=$?
- $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
- cross_compiling=no
- else
- if test "$cross_compiling" = maybe; then
- cross_compiling=yes
- else
- { { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5
-$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
-{ { $as_echo "$as_me:$LINENO: error: cannot run C compiled programs.
-If you meant to cross compile, use \`--host'.
-See \`config.log' for more details." >&5
-$as_echo "$as_me: error: cannot run C compiled programs.
-If you meant to cross compile, use \`--host'.
-See \`config.log' for more details." >&2;}
- { (exit 1); exit 1; }; }; }
- fi
- fi
-fi
-{ $as_echo "$as_me:$LINENO: result: yes" >&5
-$as_echo "yes" >&6; }
-
rm -f -r a.out a.out.dSYM a.exe conftest$ac_cv_exeext b.out
ac_clean_files=$ac_clean_files_save
-# Check that the compiler produces executables we can run. If not, either
-# the compiler is broken, or we cross compile.
-{ $as_echo "$as_me:$LINENO: checking whether we are cross compiling" >&5
-$as_echo_n "checking whether we are cross compiling... " >&6; }
-{ $as_echo "$as_me:$LINENO: result: $cross_compiling" >&5
-$as_echo "$cross_compiling" >&6; }
-
-{ $as_echo "$as_me:$LINENO: checking for suffix of executables" >&5
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for suffix of executables" >&5
$as_echo_n "checking for suffix of executables... " >&6; }
-if { (ac_try="$ac_link"
+if { { ac_try="$ac_link"
case "(($ac_try" in
*\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
*) ac_try_echo=$ac_try;;
esac
-eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
-$as_echo "$ac_try_echo") >&5
+eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""
+$as_echo "$ac_try_echo"; } >&5
(eval "$ac_link") 2>&5
ac_status=$?
- $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; then
+ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
+ test $ac_status = 0; }; then :
# If both `conftest.exe' and `conftest' are `present' (well, observable)
# catch `conftest.exe'. For instance with Cygwin, `ls conftest' will
# work properly (i.e., refer to `conftest.exe'), while it won't with
@@ -2283,32 +2473,83 @@ for ac_file in conftest.exe conftest conftest.*; do
esac
done
else
- { { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5
+ { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
-{ { $as_echo "$as_me:$LINENO: error: cannot compute suffix of executables: cannot compile and link
-See \`config.log' for more details." >&5
-$as_echo "$as_me: error: cannot compute suffix of executables: cannot compile and link
-See \`config.log' for more details." >&2;}
- { (exit 1); exit 1; }; }; }
+as_fn_error $? "cannot compute suffix of executables: cannot compile and link
+See \`config.log' for more details" "$LINENO" 5; }
fi
-
-rm -f conftest$ac_cv_exeext
-{ $as_echo "$as_me:$LINENO: result: $ac_cv_exeext" >&5
+rm -f conftest conftest$ac_cv_exeext
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_exeext" >&5
$as_echo "$ac_cv_exeext" >&6; }
rm -f conftest.$ac_ext
EXEEXT=$ac_cv_exeext
ac_exeext=$EXEEXT
-{ $as_echo "$as_me:$LINENO: checking for suffix of object files" >&5
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+#include <stdio.h>
+int
+main ()
+{
+FILE *f = fopen ("conftest.out", "w");
+ return ferror (f) || fclose (f) != 0;
+
+ ;
+ return 0;
+}
+_ACEOF
+ac_clean_files="$ac_clean_files conftest.out"
+# Check that the compiler produces executables we can run. If not, either
+# the compiler is broken, or we cross compile.
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether we are cross compiling" >&5
+$as_echo_n "checking whether we are cross compiling... " >&6; }
+if test "$cross_compiling" != yes; then
+ { { ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""
+$as_echo "$ac_try_echo"; } >&5
+ (eval "$ac_link") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
+ test $ac_status = 0; }
+ if { ac_try='./conftest$ac_cv_exeext'
+ { { case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""
+$as_echo "$ac_try_echo"; } >&5
+ (eval "$ac_try") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
+ test $ac_status = 0; }; }; then
+ cross_compiling=no
+ else
+ if test "$cross_compiling" = maybe; then
+ cross_compiling=yes
+ else
+ { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
+$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
+as_fn_error $? "cannot run C compiled programs.
+If you meant to cross compile, use \`--host'.
+See \`config.log' for more details" "$LINENO" 5; }
+ fi
+ fi
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $cross_compiling" >&5
+$as_echo "$cross_compiling" >&6; }
+
+rm -f conftest.$ac_ext conftest$ac_cv_exeext conftest.out
+ac_clean_files=$ac_clean_files_save
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for suffix of object files" >&5
$as_echo_n "checking for suffix of object files... " >&6; }
-if test "${ac_cv_objext+set}" = set; then
+if ${ac_cv_objext+:} false; then :
$as_echo_n "(cached) " >&6
else
- cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h. */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
+ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
int
@@ -2320,17 +2561,17 @@ main ()
}
_ACEOF
rm -f conftest.o conftest.obj
-if { (ac_try="$ac_compile"
+if { { ac_try="$ac_compile"
case "(($ac_try" in
*\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
*) ac_try_echo=$ac_try;;
esac
-eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
-$as_echo "$ac_try_echo") >&5
+eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""
+$as_echo "$ac_try_echo"; } >&5
(eval "$ac_compile") 2>&5
ac_status=$?
- $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; then
+ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
+ test $ac_status = 0; }; then :
for ac_file in conftest.o conftest.obj conftest.*; do
test -f "$ac_file" || continue;
case $ac_file in
@@ -2343,31 +2584,23 @@ else
$as_echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
-{ { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5
+{ { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
-{ { $as_echo "$as_me:$LINENO: error: cannot compute suffix of object files: cannot compile
-See \`config.log' for more details." >&5
-$as_echo "$as_me: error: cannot compute suffix of object files: cannot compile
-See \`config.log' for more details." >&2;}
- { (exit 1); exit 1; }; }; }
+as_fn_error $? "cannot compute suffix of object files: cannot compile
+See \`config.log' for more details" "$LINENO" 5; }
fi
-
rm -f conftest.$ac_cv_objext conftest.$ac_ext
fi
-{ $as_echo "$as_me:$LINENO: result: $ac_cv_objext" >&5
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_objext" >&5
$as_echo "$ac_cv_objext" >&6; }
OBJEXT=$ac_cv_objext
ac_objext=$OBJEXT
-{ $as_echo "$as_me:$LINENO: checking whether we are using the GNU C compiler" >&5
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether we are using the GNU C compiler" >&5
$as_echo_n "checking whether we are using the GNU C compiler... " >&6; }
-if test "${ac_cv_c_compiler_gnu+set}" = set; then
+if ${ac_cv_c_compiler_gnu+:} false; then :
$as_echo_n "(cached) " >&6
else
- cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h. */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
+ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
int
@@ -2381,37 +2614,16 @@ main ()
return 0;
}
_ACEOF
-rm -f conftest.$ac_objext
-if { (ac_try="$ac_compile"
-case "(($ac_try" in
- *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
- *) ac_try_echo=$ac_try;;
-esac
-eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
-$as_echo "$ac_try_echo") >&5
- (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } && {
- test -z "$ac_c_werror_flag" ||
- test ! -s conftest.err
- } && test -s conftest.$ac_objext; then
+if ac_fn_c_try_compile "$LINENO"; then :
ac_compiler_gnu=yes
else
- $as_echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
- ac_compiler_gnu=no
+ ac_compiler_gnu=no
fi
-
rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
ac_cv_c_compiler_gnu=$ac_compiler_gnu
fi
-{ $as_echo "$as_me:$LINENO: result: $ac_cv_c_compiler_gnu" >&5
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_c_compiler_gnu" >&5
$as_echo "$ac_cv_c_compiler_gnu" >&6; }
if test $ac_compiler_gnu = yes; then
GCC=yes
@@ -2420,20 +2632,16 @@ else
fi
ac_test_CFLAGS=${CFLAGS+set}
ac_save_CFLAGS=$CFLAGS
-{ $as_echo "$as_me:$LINENO: checking whether $CC accepts -g" >&5
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether $CC accepts -g" >&5
$as_echo_n "checking whether $CC accepts -g... " >&6; }
-if test "${ac_cv_prog_cc_g+set}" = set; then
+if ${ac_cv_prog_cc_g+:} false; then :
$as_echo_n "(cached) " >&6
else
ac_save_c_werror_flag=$ac_c_werror_flag
ac_c_werror_flag=yes
ac_cv_prog_cc_g=no
CFLAGS="-g"
- cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h. */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
+ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
int
@@ -2444,35 +2652,11 @@ main ()
return 0;
}
_ACEOF
-rm -f conftest.$ac_objext
-if { (ac_try="$ac_compile"
-case "(($ac_try" in
- *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
- *) ac_try_echo=$ac_try;;
-esac
-eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
-$as_echo "$ac_try_echo") >&5
- (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } && {
- test -z "$ac_c_werror_flag" ||
- test ! -s conftest.err
- } && test -s conftest.$ac_objext; then
+if ac_fn_c_try_compile "$LINENO"; then :
ac_cv_prog_cc_g=yes
else
- $as_echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
- CFLAGS=""
- cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h. */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
+ CFLAGS=""
+ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
int
@@ -2483,36 +2667,12 @@ main ()
return 0;
}
_ACEOF
-rm -f conftest.$ac_objext
-if { (ac_try="$ac_compile"
-case "(($ac_try" in
- *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
- *) ac_try_echo=$ac_try;;
-esac
-eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
-$as_echo "$ac_try_echo") >&5
- (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } && {
- test -z "$ac_c_werror_flag" ||
- test ! -s conftest.err
- } && test -s conftest.$ac_objext; then
- :
-else
- $as_echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
+if ac_fn_c_try_compile "$LINENO"; then :
- ac_c_werror_flag=$ac_save_c_werror_flag
+else
+ ac_c_werror_flag=$ac_save_c_werror_flag
CFLAGS="-g"
- cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h. */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
+ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
int
@@ -2523,42 +2683,17 @@ main ()
return 0;
}
_ACEOF
-rm -f conftest.$ac_objext
-if { (ac_try="$ac_compile"
-case "(($ac_try" in
- *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
- *) ac_try_echo=$ac_try;;
-esac
-eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
-$as_echo "$ac_try_echo") >&5
- (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } && {
- test -z "$ac_c_werror_flag" ||
- test ! -s conftest.err
- } && test -s conftest.$ac_objext; then
+if ac_fn_c_try_compile "$LINENO"; then :
ac_cv_prog_cc_g=yes
-else
- $as_echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-
fi
-
rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
fi
-
rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
fi
-
rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
ac_c_werror_flag=$ac_save_c_werror_flag
fi
-{ $as_echo "$as_me:$LINENO: result: $ac_cv_prog_cc_g" >&5
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_prog_cc_g" >&5
$as_echo "$ac_cv_prog_cc_g" >&6; }
if test "$ac_test_CFLAGS" = set; then
CFLAGS=$ac_save_CFLAGS
@@ -2575,23 +2710,18 @@ else
CFLAGS=
fi
fi
-{ $as_echo "$as_me:$LINENO: checking for $CC option to accept ISO C89" >&5
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $CC option to accept ISO C89" >&5
$as_echo_n "checking for $CC option to accept ISO C89... " >&6; }
-if test "${ac_cv_prog_cc_c89+set}" = set; then
+if ${ac_cv_prog_cc_c89+:} false; then :
$as_echo_n "(cached) " >&6
else
ac_cv_prog_cc_c89=no
ac_save_CC=$CC
-cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h. */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
#include <stdarg.h>
#include <stdio.h>
-#include <sys/types.h>
-#include <sys/stat.h>
+struct stat;
/* Most of the following tests are stolen from RCS 5.7's src/conf.sh. */
struct buf { int x; };
FILE * (*rcsopen) (struct buf *, struct stat *, int);
@@ -2638,37 +2768,14 @@ return f (e, argv, 0) != argv[0] || f (e, argv, 1) != argv[1];
;
return 0;
}
-_ACEOF
-for ac_arg in '' -qlanglvl=extc89 -qlanglvl=ansi -std \
- -Ae "-Aa -D_HPUX_SOURCE" "-Xc -D__EXTENSIONS__"
-do
- CC="$ac_save_CC $ac_arg"
- rm -f conftest.$ac_objext
-if { (ac_try="$ac_compile"
-case "(($ac_try" in
- *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
- *) ac_try_echo=$ac_try;;
-esac
-eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
-$as_echo "$ac_try_echo") >&5
- (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } && {
- test -z "$ac_c_werror_flag" ||
- test ! -s conftest.err
- } && test -s conftest.$ac_objext; then
+_ACEOF
+for ac_arg in '' -qlanglvl=extc89 -qlanglvl=ansi -std \
+ -Ae "-Aa -D_HPUX_SOURCE" "-Xc -D__EXTENSIONS__"
+do
+ CC="$ac_save_CC $ac_arg"
+ if ac_fn_c_try_compile "$LINENO"; then :
ac_cv_prog_cc_c89=$ac_arg
-else
- $as_echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-
fi
-
rm -f core conftest.err conftest.$ac_objext
test "x$ac_cv_prog_cc_c89" != "xno" && break
done
@@ -2679,17 +2786,19 @@ fi
# AC_CACHE_VAL
case "x$ac_cv_prog_cc_c89" in
x)
- { $as_echo "$as_me:$LINENO: result: none needed" >&5
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: none needed" >&5
$as_echo "none needed" >&6; } ;;
xno)
- { $as_echo "$as_me:$LINENO: result: unsupported" >&5
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: unsupported" >&5
$as_echo "unsupported" >&6; } ;;
*)
CC="$CC $ac_cv_prog_cc_c89"
- { $as_echo "$as_me:$LINENO: result: $ac_cv_prog_cc_c89" >&5
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_prog_cc_c89" >&5
$as_echo "$ac_cv_prog_cc_c89" >&6; } ;;
esac
+if test "x$ac_cv_prog_cc_c89" != xno; then :
+fi
ac_ext=c
ac_cpp='$CPP $CPPFLAGS'
@@ -2703,14 +2812,14 @@ ac_cpp='$CPP $CPPFLAGS'
ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
ac_compiler_gnu=$ac_cv_c_compiler_gnu
-{ $as_echo "$as_me:$LINENO: checking how to run the C preprocessor" >&5
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking how to run the C preprocessor" >&5
$as_echo_n "checking how to run the C preprocessor... " >&6; }
# On Suns, sometimes $CPP names a directory.
if test -n "$CPP" && test -d "$CPP"; then
CPP=
fi
if test -z "$CPP"; then
- if test "${ac_cv_prog_CPP+set}" = set; then
+ if ${ac_cv_prog_CPP+:} false; then :
$as_echo_n "(cached) " >&6
else
# Double quotes because CPP needs to be expanded
@@ -2725,11 +2834,7 @@ do
# <limits.h> exists even on freestanding compilers.
# On the NeXT, cc -E runs the code through the compiler's parser,
# not just through cpp. "Syntax error" is here to catch this case.
- cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h. */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
+ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
#ifdef __STDC__
# include <limits.h>
@@ -2738,78 +2843,34 @@ cat >>conftest.$ac_ext <<_ACEOF
#endif
Syntax error
_ACEOF
-if { (ac_try="$ac_cpp conftest.$ac_ext"
-case "(($ac_try" in
- *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
- *) ac_try_echo=$ac_try;;
-esac
-eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
-$as_echo "$ac_try_echo") >&5
- (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } >/dev/null && {
- test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" ||
- test ! -s conftest.err
- }; then
- :
-else
- $as_echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
+if ac_fn_c_try_cpp "$LINENO"; then :
+else
# Broken: fails on valid input.
continue
fi
-
-rm -f conftest.err conftest.$ac_ext
+rm -f conftest.err conftest.i conftest.$ac_ext
# OK, works on sane cases. Now check whether nonexistent headers
# can be detected and how.
- cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h. */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
+ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
#include <ac_nonexistent.h>
_ACEOF
-if { (ac_try="$ac_cpp conftest.$ac_ext"
-case "(($ac_try" in
- *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
- *) ac_try_echo=$ac_try;;
-esac
-eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
-$as_echo "$ac_try_echo") >&5
- (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } >/dev/null && {
- test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" ||
- test ! -s conftest.err
- }; then
+if ac_fn_c_try_cpp "$LINENO"; then :
# Broken: success on invalid input.
continue
else
- $as_echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
# Passes both tests.
ac_preproc_ok=:
break
fi
-
-rm -f conftest.err conftest.$ac_ext
+rm -f conftest.err conftest.i conftest.$ac_ext
done
# Because of `break', _AC_PREPROC_IFELSE's cleaning code was skipped.
-rm -f conftest.err conftest.$ac_ext
-if $ac_preproc_ok; then
+rm -f conftest.i conftest.err conftest.$ac_ext
+if $ac_preproc_ok; then :
break
fi
@@ -2821,7 +2882,7 @@ fi
else
ac_cv_prog_CPP=$CPP
fi
-{ $as_echo "$as_me:$LINENO: result: $CPP" >&5
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $CPP" >&5
$as_echo "$CPP" >&6; }
ac_preproc_ok=false
for ac_c_preproc_warn_flag in '' yes
@@ -2832,11 +2893,7 @@ do
# <limits.h> exists even on freestanding compilers.
# On the NeXT, cc -E runs the code through the compiler's parser,
# not just through cpp. "Syntax error" is here to catch this case.
- cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h. */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
+ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
#ifdef __STDC__
# include <limits.h>
@@ -2845,87 +2902,40 @@ cat >>conftest.$ac_ext <<_ACEOF
#endif
Syntax error
_ACEOF
-if { (ac_try="$ac_cpp conftest.$ac_ext"
-case "(($ac_try" in
- *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
- *) ac_try_echo=$ac_try;;
-esac
-eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
-$as_echo "$ac_try_echo") >&5
- (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } >/dev/null && {
- test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" ||
- test ! -s conftest.err
- }; then
- :
-else
- $as_echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
+if ac_fn_c_try_cpp "$LINENO"; then :
+else
# Broken: fails on valid input.
continue
fi
-
-rm -f conftest.err conftest.$ac_ext
+rm -f conftest.err conftest.i conftest.$ac_ext
# OK, works on sane cases. Now check whether nonexistent headers
# can be detected and how.
- cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h. */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
+ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
#include <ac_nonexistent.h>
_ACEOF
-if { (ac_try="$ac_cpp conftest.$ac_ext"
-case "(($ac_try" in
- *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
- *) ac_try_echo=$ac_try;;
-esac
-eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
-$as_echo "$ac_try_echo") >&5
- (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } >/dev/null && {
- test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" ||
- test ! -s conftest.err
- }; then
+if ac_fn_c_try_cpp "$LINENO"; then :
# Broken: success on invalid input.
continue
else
- $as_echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
# Passes both tests.
ac_preproc_ok=:
break
fi
-
-rm -f conftest.err conftest.$ac_ext
+rm -f conftest.err conftest.i conftest.$ac_ext
done
# Because of `break', _AC_PREPROC_IFELSE's cleaning code was skipped.
-rm -f conftest.err conftest.$ac_ext
-if $ac_preproc_ok; then
- :
+rm -f conftest.i conftest.err conftest.$ac_ext
+if $ac_preproc_ok; then :
+
else
- { { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5
+ { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
-{ { $as_echo "$as_me:$LINENO: error: C preprocessor \"$CPP\" fails sanity check
-See \`config.log' for more details." >&5
-$as_echo "$as_me: error: C preprocessor \"$CPP\" fails sanity check
-See \`config.log' for more details." >&2;}
- { (exit 1); exit 1; }; }; }
+as_fn_error $? "C preprocessor \"$CPP\" fails sanity check
+See \`config.log' for more details" "$LINENO" 5; }
fi
ac_ext=c
@@ -2935,9 +2945,9 @@ ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $
ac_compiler_gnu=$ac_cv_c_compiler_gnu
-{ $as_echo "$as_me:$LINENO: checking for grep that handles long lines and -e" >&5
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for grep that handles long lines and -e" >&5
$as_echo_n "checking for grep that handles long lines and -e... " >&6; }
-if test "${ac_cv_path_GREP+set}" = set; then
+if ${ac_cv_path_GREP+:} false; then :
$as_echo_n "(cached) " >&6
else
if test -z "$GREP"; then
@@ -2948,10 +2958,10 @@ for as_dir in $PATH$PATH_SEPARATOR/usr/xpg4/bin
do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
- for ac_prog in grep ggrep; do
+ for ac_prog in grep ggrep; do
for ac_exec_ext in '' $ac_executable_extensions; do
ac_path_GREP="$as_dir/$ac_prog$ac_exec_ext"
- { test -f "$ac_path_GREP" && $as_test_x "$ac_path_GREP"; } || continue
+ as_fn_executable_p "$ac_path_GREP" || continue
# Check for GNU ac_path_GREP and select it if it is found.
# Check for GNU $ac_path_GREP
case `"$ac_path_GREP" --version 2>&1` in
@@ -2968,7 +2978,7 @@ case `"$ac_path_GREP" --version 2>&1` in
$as_echo 'GREP' >> "conftest.nl"
"$ac_path_GREP" -e 'GREP$' -e '-(cannot match)-' < "conftest.nl" >"conftest.out" 2>/dev/null || break
diff "conftest.out" "conftest.nl" >/dev/null 2>&1 || break
- ac_count=`expr $ac_count + 1`
+ as_fn_arith $ac_count + 1 && ac_count=$as_val
if test $ac_count -gt ${ac_path_GREP_max-0}; then
# Best one so far, save it but keep looking for a better one
ac_cv_path_GREP="$ac_path_GREP"
@@ -2983,26 +2993,24 @@ esac
$ac_path_GREP_found && break 3
done
done
-done
+ done
IFS=$as_save_IFS
if test -z "$ac_cv_path_GREP"; then
- { { $as_echo "$as_me:$LINENO: error: no acceptable grep could be found in $PATH$PATH_SEPARATOR/usr/xpg4/bin" >&5
-$as_echo "$as_me: error: no acceptable grep could be found in $PATH$PATH_SEPARATOR/usr/xpg4/bin" >&2;}
- { (exit 1); exit 1; }; }
+ as_fn_error $? "no acceptable grep could be found in $PATH$PATH_SEPARATOR/usr/xpg4/bin" "$LINENO" 5
fi
else
ac_cv_path_GREP=$GREP
fi
fi
-{ $as_echo "$as_me:$LINENO: result: $ac_cv_path_GREP" >&5
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_path_GREP" >&5
$as_echo "$ac_cv_path_GREP" >&6; }
GREP="$ac_cv_path_GREP"
-{ $as_echo "$as_me:$LINENO: checking for egrep" >&5
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for egrep" >&5
$as_echo_n "checking for egrep... " >&6; }
-if test "${ac_cv_path_EGREP+set}" = set; then
+if ${ac_cv_path_EGREP+:} false; then :
$as_echo_n "(cached) " >&6
else
if echo a | $GREP -E '(a|b)' >/dev/null 2>&1
@@ -3016,10 +3024,10 @@ for as_dir in $PATH$PATH_SEPARATOR/usr/xpg4/bin
do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
- for ac_prog in egrep; do
+ for ac_prog in egrep; do
for ac_exec_ext in '' $ac_executable_extensions; do
ac_path_EGREP="$as_dir/$ac_prog$ac_exec_ext"
- { test -f "$ac_path_EGREP" && $as_test_x "$ac_path_EGREP"; } || continue
+ as_fn_executable_p "$ac_path_EGREP" || continue
# Check for GNU ac_path_EGREP and select it if it is found.
# Check for GNU $ac_path_EGREP
case `"$ac_path_EGREP" --version 2>&1` in
@@ -3036,7 +3044,7 @@ case `"$ac_path_EGREP" --version 2>&1` in
$as_echo 'EGREP' >> "conftest.nl"
"$ac_path_EGREP" 'EGREP$' < "conftest.nl" >"conftest.out" 2>/dev/null || break
diff "conftest.out" "conftest.nl" >/dev/null 2>&1 || break
- ac_count=`expr $ac_count + 1`
+ as_fn_arith $ac_count + 1 && ac_count=$as_val
if test $ac_count -gt ${ac_path_EGREP_max-0}; then
# Best one so far, save it but keep looking for a better one
ac_cv_path_EGREP="$ac_path_EGREP"
@@ -3051,12 +3059,10 @@ esac
$ac_path_EGREP_found && break 3
done
done
-done
+ done
IFS=$as_save_IFS
if test -z "$ac_cv_path_EGREP"; then
- { { $as_echo "$as_me:$LINENO: error: no acceptable egrep could be found in $PATH$PATH_SEPARATOR/usr/xpg4/bin" >&5
-$as_echo "$as_me: error: no acceptable egrep could be found in $PATH$PATH_SEPARATOR/usr/xpg4/bin" >&2;}
- { (exit 1); exit 1; }; }
+ as_fn_error $? "no acceptable egrep could be found in $PATH$PATH_SEPARATOR/usr/xpg4/bin" "$LINENO" 5
fi
else
ac_cv_path_EGREP=$EGREP
@@ -3064,21 +3070,17 @@ fi
fi
fi
-{ $as_echo "$as_me:$LINENO: result: $ac_cv_path_EGREP" >&5
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_path_EGREP" >&5
$as_echo "$ac_cv_path_EGREP" >&6; }
EGREP="$ac_cv_path_EGREP"
-{ $as_echo "$as_me:$LINENO: checking for ANSI C header files" >&5
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for ANSI C header files" >&5
$as_echo_n "checking for ANSI C header files... " >&6; }
-if test "${ac_cv_header_stdc+set}" = set; then
+if ${ac_cv_header_stdc+:} false; then :
$as_echo_n "(cached) " >&6
else
- cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h. */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
+ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
#include <stdlib.h>
#include <stdarg.h>
@@ -3093,48 +3095,23 @@ main ()
return 0;
}
_ACEOF
-rm -f conftest.$ac_objext
-if { (ac_try="$ac_compile"
-case "(($ac_try" in
- *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
- *) ac_try_echo=$ac_try;;
-esac
-eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
-$as_echo "$ac_try_echo") >&5
- (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } && {
- test -z "$ac_c_werror_flag" ||
- test ! -s conftest.err
- } && test -s conftest.$ac_objext; then
+if ac_fn_c_try_compile "$LINENO"; then :
ac_cv_header_stdc=yes
else
- $as_echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
- ac_cv_header_stdc=no
+ ac_cv_header_stdc=no
fi
-
rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
if test $ac_cv_header_stdc = yes; then
# SunOS 4.x string.h does not declare mem*, contrary to ANSI.
- cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h. */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
+ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
#include <string.h>
_ACEOF
if (eval "$ac_cpp conftest.$ac_ext") 2>&5 |
- $EGREP "memchr" >/dev/null 2>&1; then
- :
+ $EGREP "memchr" >/dev/null 2>&1; then :
+
else
ac_cv_header_stdc=no
fi
@@ -3144,18 +3121,14 @@ fi
if test $ac_cv_header_stdc = yes; then
# ISC 2.0.2 stdlib.h does not declare free, contrary to ANSI.
- cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h. */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
+ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
#include <stdlib.h>
_ACEOF
if (eval "$ac_cpp conftest.$ac_ext") 2>&5 |
- $EGREP "free" >/dev/null 2>&1; then
- :
+ $EGREP "free" >/dev/null 2>&1; then :
+
else
ac_cv_header_stdc=no
fi
@@ -3165,14 +3138,10 @@ fi
if test $ac_cv_header_stdc = yes; then
# /bin/cc in Irix-4.0.5 gets non-ANSI ctype macros unless using -ansi.
- if test "$cross_compiling" = yes; then
+ if test "$cross_compiling" = yes; then :
:
else
- cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h. */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
+ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
#include <ctype.h>
#include <stdlib.h>
@@ -3199,118 +3168,33 @@ main ()
return 0;
}
_ACEOF
-rm -f conftest$ac_exeext
-if { (ac_try="$ac_link"
-case "(($ac_try" in
- *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
- *) ac_try_echo=$ac_try;;
-esac
-eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
-$as_echo "$ac_try_echo") >&5
- (eval "$ac_link") 2>&5
- ac_status=$?
- $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
- { (case "(($ac_try" in
- *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
- *) ac_try_echo=$ac_try;;
-esac
-eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
-$as_echo "$ac_try_echo") >&5
- (eval "$ac_try") 2>&5
- ac_status=$?
- $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
- :
-else
- $as_echo "$as_me: program exited with status $ac_status" >&5
-$as_echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
+if ac_fn_c_try_run "$LINENO"; then :
-( exit $ac_status )
-ac_cv_header_stdc=no
+else
+ ac_cv_header_stdc=no
fi
-rm -rf conftest.dSYM
-rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext \
+ conftest.$ac_objext conftest.beam conftest.$ac_ext
fi
-
fi
fi
-{ $as_echo "$as_me:$LINENO: result: $ac_cv_header_stdc" >&5
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_header_stdc" >&5
$as_echo "$ac_cv_header_stdc" >&6; }
if test $ac_cv_header_stdc = yes; then
-cat >>confdefs.h <<\_ACEOF
-#define STDC_HEADERS 1
-_ACEOF
+$as_echo "#define STDC_HEADERS 1" >>confdefs.h
fi
# On IRIX 5.3, sys/types and inttypes.h are conflicting.
-
-
-
-
-
-
-
-
-
for ac_header in sys/types.h sys/stat.h stdlib.h string.h memory.h strings.h \
inttypes.h stdint.h unistd.h
-do
-as_ac_Header=`$as_echo "ac_cv_header_$ac_header" | $as_tr_sh`
-{ $as_echo "$as_me:$LINENO: checking for $ac_header" >&5
-$as_echo_n "checking for $ac_header... " >&6; }
-if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
- $as_echo_n "(cached) " >&6
-else
- cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h. */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h. */
-$ac_includes_default
-
-#include <$ac_header>
-_ACEOF
-rm -f conftest.$ac_objext
-if { (ac_try="$ac_compile"
-case "(($ac_try" in
- *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
- *) ac_try_echo=$ac_try;;
-esac
-eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
-$as_echo "$ac_try_echo") >&5
- (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } && {
- test -z "$ac_c_werror_flag" ||
- test ! -s conftest.err
- } && test -s conftest.$ac_objext; then
- eval "$as_ac_Header=yes"
-else
- $as_echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
- eval "$as_ac_Header=no"
-fi
-
-rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
-fi
-ac_res=`eval 'as_val=${'$as_ac_Header'}
- $as_echo "$as_val"'`
- { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
-$as_echo "$ac_res" >&6; }
-as_val=`eval 'as_val=${'$as_ac_Header'}
- $as_echo "$as_val"'`
- if test "x$as_val" = x""yes; then
+do :
+ as_ac_Header=`$as_echo "ac_cv_header_$ac_header" | $as_tr_sh`
+ac_fn_c_check_header_compile "$LINENO" "$ac_header" "$as_ac_Header" "$ac_includes_default
+"
+if eval test \"x\$"$as_ac_Header"\" = x"yes"; then :
cat >>confdefs.h <<_ACEOF
#define `$as_echo "HAVE_$ac_header" | $as_tr_cpp` 1
_ACEOF
@@ -3322,18 +3206,14 @@ done
have_zlib=no
- { $as_echo "$as_me:$LINENO: checking for main in -lz" >&5
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for main in -lz" >&5
$as_echo_n "checking for main in -lz... " >&6; }
-if test "${ac_cv_lib_z_main+set}" = set; then
+if ${ac_cv_lib_z_main+:} false; then :
$as_echo_n "(cached) " >&6
else
ac_check_lib_save_LIBS=$LIBS
LIBS="-lz $LIBS"
-cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h. */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
@@ -3345,184 +3225,29 @@ return main ();
return 0;
}
_ACEOF
-rm -f conftest.$ac_objext conftest$ac_exeext
-if { (ac_try="$ac_link"
-case "(($ac_try" in
- *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
- *) ac_try_echo=$ac_try;;
-esac
-eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
-$as_echo "$ac_try_echo") >&5
- (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } && {
- test -z "$ac_c_werror_flag" ||
- test ! -s conftest.err
- } && test -s conftest$ac_exeext && {
- test "$cross_compiling" = yes ||
- $as_test_x conftest$ac_exeext
- }; then
+if ac_fn_c_try_link "$LINENO"; then :
ac_cv_lib_z_main=yes
else
- $as_echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
- ac_cv_lib_z_main=no
+ ac_cv_lib_z_main=no
fi
-
-rm -rf conftest.dSYM
-rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
- conftest$ac_exeext conftest.$ac_ext
+rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
LIBS=$ac_check_lib_save_LIBS
fi
-{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_z_main" >&5
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_z_main" >&5
$as_echo "$ac_cv_lib_z_main" >&6; }
-if test "x$ac_cv_lib_z_main" = x""yes; then
-
- if test "${ac_cv_header_zlib_h+set}" = set; then
- { $as_echo "$as_me:$LINENO: checking for zlib.h" >&5
-$as_echo_n "checking for zlib.h... " >&6; }
-if test "${ac_cv_header_zlib_h+set}" = set; then
- $as_echo_n "(cached) " >&6
-fi
-{ $as_echo "$as_me:$LINENO: result: $ac_cv_header_zlib_h" >&5
-$as_echo "$ac_cv_header_zlib_h" >&6; }
-else
- # Is the header compilable?
-{ $as_echo "$as_me:$LINENO: checking zlib.h usability" >&5
-$as_echo_n "checking zlib.h usability... " >&6; }
-cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h. */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h. */
-$ac_includes_default
-#include <zlib.h>
-_ACEOF
-rm -f conftest.$ac_objext
-if { (ac_try="$ac_compile"
-case "(($ac_try" in
- *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
- *) ac_try_echo=$ac_try;;
-esac
-eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
-$as_echo "$ac_try_echo") >&5
- (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } && {
- test -z "$ac_c_werror_flag" ||
- test ! -s conftest.err
- } && test -s conftest.$ac_objext; then
- ac_header_compiler=yes
-else
- $as_echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
- ac_header_compiler=no
-fi
-
-rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
-{ $as_echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
-$as_echo "$ac_header_compiler" >&6; }
-
-# Is the header present?
-{ $as_echo "$as_me:$LINENO: checking zlib.h presence" >&5
-$as_echo_n "checking zlib.h presence... " >&6; }
-cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h. */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
-/* end confdefs.h. */
-#include <zlib.h>
-_ACEOF
-if { (ac_try="$ac_cpp conftest.$ac_ext"
-case "(($ac_try" in
- *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
- *) ac_try_echo=$ac_try;;
-esac
-eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
-$as_echo "$ac_try_echo") >&5
- (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } >/dev/null && {
- test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" ||
- test ! -s conftest.err
- }; then
- ac_header_preproc=yes
-else
- $as_echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
- ac_header_preproc=no
-fi
-
-rm -f conftest.err conftest.$ac_ext
-{ $as_echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
-$as_echo "$ac_header_preproc" >&6; }
-
-# So? What about this header?
-case $ac_header_compiler:$ac_header_preproc:$ac_c_preproc_warn_flag in
- yes:no: )
- { $as_echo "$as_me:$LINENO: WARNING: zlib.h: accepted by the compiler, rejected by the preprocessor!" >&5
-$as_echo "$as_me: WARNING: zlib.h: accepted by the compiler, rejected by the preprocessor!" >&2;}
- { $as_echo "$as_me:$LINENO: WARNING: zlib.h: proceeding with the compiler's result" >&5
-$as_echo "$as_me: WARNING: zlib.h: proceeding with the compiler's result" >&2;}
- ac_header_preproc=yes
- ;;
- no:yes:* )
- { $as_echo "$as_me:$LINENO: WARNING: zlib.h: present but cannot be compiled" >&5
-$as_echo "$as_me: WARNING: zlib.h: present but cannot be compiled" >&2;}
- { $as_echo "$as_me:$LINENO: WARNING: zlib.h: check for missing prerequisite headers?" >&5
-$as_echo "$as_me: WARNING: zlib.h: check for missing prerequisite headers?" >&2;}
- { $as_echo "$as_me:$LINENO: WARNING: zlib.h: see the Autoconf documentation" >&5
-$as_echo "$as_me: WARNING: zlib.h: see the Autoconf documentation" >&2;}
- { $as_echo "$as_me:$LINENO: WARNING: zlib.h: section \"Present But Cannot Be Compiled\"" >&5
-$as_echo "$as_me: WARNING: zlib.h: section \"Present But Cannot Be Compiled\"" >&2;}
- { $as_echo "$as_me:$LINENO: WARNING: zlib.h: proceeding with the preprocessor's result" >&5
-$as_echo "$as_me: WARNING: zlib.h: proceeding with the preprocessor's result" >&2;}
- { $as_echo "$as_me:$LINENO: WARNING: zlib.h: in the future, the compiler will take precedence" >&5
-$as_echo "$as_me: WARNING: zlib.h: in the future, the compiler will take precedence" >&2;}
-
- ;;
-esac
-{ $as_echo "$as_me:$LINENO: checking for zlib.h" >&5
-$as_echo_n "checking for zlib.h... " >&6; }
-if test "${ac_cv_header_zlib_h+set}" = set; then
- $as_echo_n "(cached) " >&6
-else
- ac_cv_header_zlib_h=$ac_header_preproc
-fi
-{ $as_echo "$as_me:$LINENO: result: $ac_cv_header_zlib_h" >&5
-$as_echo "$ac_cv_header_zlib_h" >&6; }
+if test "x$ac_cv_lib_z_main" = xyes; then :
-fi
-if test "x$ac_cv_header_zlib_h" = x""yes; then
+ ac_fn_c_check_header_mongrel "$LINENO" "zlib.h" "ac_cv_header_zlib_h" "$ac_includes_default"
+if test "x$ac_cv_header_zlib_h" = xyes; then :
- { $as_echo "$as_me:$LINENO: checking if zlib version >= 1.1.3" >&5
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking if zlib version >= 1.1.3" >&5
$as_echo_n "checking if zlib version >= 1.1.3... " >&6; }
- if test "$cross_compiling" = yes; then
- { $as_echo "$as_me:$LINENO: result: no" >&5
+ if test "$cross_compiling" = yes; then :
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
$as_echo "no" >&6; }
else
- cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h. */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
+ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
#include "confdefs.h"
@@ -3536,46 +3261,19 @@ int main() {
#endif
}
_ACEOF
-rm -f conftest$ac_exeext
-if { (ac_try="$ac_link"
-case "(($ac_try" in
- *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
- *) ac_try_echo=$ac_try;;
-esac
-eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
-$as_echo "$ac_try_echo") >&5
- (eval "$ac_link") 2>&5
- ac_status=$?
- $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
- { (case "(($ac_try" in
- *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
- *) ac_try_echo=$ac_try;;
-esac
-eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
-$as_echo "$ac_try_echo") >&5
- (eval "$ac_try") 2>&5
- ac_status=$?
- $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
- { $as_echo "$as_me:$LINENO: result: yes" >&5
+if ac_fn_c_try_run "$LINENO"; then :
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5
$as_echo "yes" >&6; }
have_zlib=yes
else
- $as_echo "$as_me: program exited with status $ac_status" >&5
-$as_echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
-( exit $ac_status )
-{ $as_echo "$as_me:$LINENO: result: no" >&5
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
$as_echo "no" >&6; }
fi
-rm -rf conftest.dSYM
-rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext \
+ conftest.$ac_objext conftest.beam conftest.$ac_ext
fi
-
fi
@@ -3583,28 +3281,28 @@ fi
fi
if test "${have_zlib}" = yes; then
- cat >>confdefs.h <<\_ACEOF
-#define HAVE_ZLIB 1
-_ACEOF
+ $as_echo "#define HAVE_ZLIB 1" >>confdefs.h
LIBS='-lz '$LIBS
fi
+ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
+
-{ $as_echo "$as_me:$LINENO: checking for pthread_create in -lpthread" >&5
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for pthread_create in -lpthread" >&5
$as_echo_n "checking for pthread_create in -lpthread... " >&6; }
-if test "${ac_cv_lib_pthread_pthread_create+set}" = set; then
+if ${ac_cv_lib_pthread_pthread_create+:} false; then :
$as_echo_n "(cached) " >&6
else
ac_check_lib_save_LIBS=$LIBS
LIBS="-lpthread $LIBS"
-cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h. */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
/* Override any GCC internal prototype to avoid an error.
@@ -3616,49 +3314,24 @@ extern "C"
char pthread_create ();
int
main ()
-{
-return pthread_create ();
- ;
- return 0;
-}
-_ACEOF
-rm -f conftest.$ac_objext conftest$ac_exeext
-if { (ac_try="$ac_link"
-case "(($ac_try" in
- *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
- *) ac_try_echo=$ac_try;;
-esac
-eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
-$as_echo "$ac_try_echo") >&5
- (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } && {
- test -z "$ac_c_werror_flag" ||
- test ! -s conftest.err
- } && test -s conftest$ac_exeext && {
- test "$cross_compiling" = yes ||
- $as_test_x conftest$ac_exeext
- }; then
+{
+return pthread_create ();
+ ;
+ return 0;
+}
+_ACEOF
+if ac_fn_c_try_link "$LINENO"; then :
ac_cv_lib_pthread_pthread_create=yes
else
- $as_echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
- ac_cv_lib_pthread_pthread_create=no
+ ac_cv_lib_pthread_pthread_create=no
fi
-
-rm -rf conftest.dSYM
-rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
- conftest$ac_exeext conftest.$ac_ext
+rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
LIBS=$ac_check_lib_save_LIBS
fi
-{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_pthread_pthread_create" >&5
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_pthread_pthread_create" >&5
$as_echo "$ac_cv_lib_pthread_pthread_create" >&6; }
-if test "x$ac_cv_lib_pthread_pthread_create" = x""yes; then
+if test "x$ac_cv_lib_pthread_pthread_create" = xyes; then :
cat >>confdefs.h <<_ACEOF
#define HAVE_LIBPTHREAD 1
_ACEOF
@@ -3668,11 +3341,7 @@ _ACEOF
fi
-cat >conftest.$ac_ext <<_ACEOF
-/* confdefs.h. */
-_ACEOF
-cat confdefs.h >>conftest.$ac_ext
-cat >>conftest.$ac_ext <<_ACEOF
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
/* Override any GCC internal prototype to avoid an error.
@@ -3690,47 +3359,23 @@ return pthread_create ();
return 0;
}
_ACEOF
-rm -f conftest.$ac_objext conftest$ac_exeext
-if { (ac_try="$ac_link"
-case "(($ac_try" in
- *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
- *) ac_try_echo=$ac_try;;
-esac
-eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
-$as_echo "$ac_try_echo") >&5
- (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } && {
- test -z "$ac_c_werror_flag" ||
- test ! -s conftest.err
- } && test -s conftest$ac_exeext && {
- test "$cross_compiling" = yes ||
- $as_test_x conftest$ac_exeext
- }; then
+if ac_fn_c_try_link "$LINENO"; then :
use_pthreads=yes
else
- $as_echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
- use_pthreads=no
+ use_pthreads=no
fi
+rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
-rm -rf conftest.dSYM
-rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
- conftest$ac_exeext conftest.$ac_ext
-
-{ $as_echo "$as_me:$LINENO: checking if we can use pthreads" >&5
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking if we can use pthreads" >&5
$as_echo_n "checking if we can use pthreads... " >&6; }
-{ $as_echo "$as_me:$LINENO: result: $use_pthreads" >&5
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $use_pthreads" >&5
$as_echo "$use_pthreads" >&6; }
-{ $as_echo "$as_me:$LINENO: checking if PTHREAD_STACK_MIN is defined" >&5
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking if PTHREAD_STACK_MIN is defined" >&5
$as_echo_n "checking if PTHREAD_STACK_MIN is defined... " >&6; }
-cat >conftest.$ac_ext <<_ACEOF
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
#include <pthread.h>
#include <limits.h>
@@ -3739,51 +3384,63 @@ cat >conftest.$ac_ext <<_ACEOF
}
_ACEOF
-rm -f conftest.$ac_objext
-if { (ac_try="$ac_compile"
-case "(($ac_try" in
- *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
- *) ac_try_echo=$ac_try;;
-esac
-eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
-$as_echo "$ac_try_echo") >&5
- (eval "$ac_compile") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } && {
- test -z "$ac_c_werror_flag" ||
- test ! -s conftest.err
- } && test -s conftest.$ac_objext; then
+if ac_fn_c_try_compile "$LINENO"; then :
use_pthread_stack_min=yes
else
- $as_echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
- use_pthread_stack_min=no
+ use_pthread_stack_min=no
fi
-
rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
-{ $as_echo "$as_me:$LINENO: result: $use_pthread_stack_min" >&5
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $use_pthread_stack_min" >&5
$as_echo "$use_pthread_stack_min" >&6; }
-if test "x$use_pthreads" = "xyes"
-then
-if test "x$use_pthread_stack_min" = "xyes"
- then
- LIBS="$LIBS -lpthread"
- cat >>confdefs.h <<\_ACEOF
-#define USE_PTHREADS 1
-_ACEOF
+if test "x$use_pthread_stack_min" = xno; then
+ use_pthreads=no
+fi
+
+
+# Check whether --enable-threading was given.
+if test "${enable_threading+set}" = set; then :
+ enableval=$enable_threading;
+fi
+
+
+
+if test "x$enable_threading" != "xno" ; then :
+
+ if test "x${use_pthreads}" = "xno"; then
+ { $as_echo "$as_me:${as_lineno-$LINENO}: ------------------------------------------" >&5
+$as_echo "$as_me: ------------------------------------------" >&6;}
+ { $as_echo "$as_me:${as_lineno-$LINENO}: Unable to find pthreads on this system. " >&5
+$as_echo "$as_me: Unable to find pthreads on this system. " >&6;}
+ { $as_echo "$as_me:${as_lineno-$LINENO}: Building a single-threaded version. " >&5
+$as_echo "$as_me: Building a single-threaded version. " >&6;}
+ { $as_echo "$as_me:${as_lineno-$LINENO}: ------------------------------------------" >&5
+$as_echo "$as_me: ------------------------------------------" >&6;}
+ fi
+
+
+ if test "x${use_pthreads}" = "xyes"; then
+ { $as_echo "$as_me:${as_lineno-$LINENO}: Enabling threading for affyio" >&5
+$as_echo "$as_me: Enabling threading for affyio" >&6;}
+ $as_echo "#define USE_PTHREADS 1" >>confdefs.h
+
+ fi
+
+else
+
+ { $as_echo "$as_me:${as_lineno-$LINENO}: Disabling threading for affyio" >&5
+$as_echo "$as_me: Disabling threading for affyio" >&6;}
- fi
fi
+
+
+
+
+
ac_config_files="$ac_config_files src/Makevars"
cat >confcache <<\_ACEOF
@@ -3813,13 +3470,13 @@ _ACEOF
case $ac_val in #(
*${as_nl}*)
case $ac_var in #(
- *_cv_*) { $as_echo "$as_me:$LINENO: WARNING: cache variable $ac_var contains a newline" >&5
+ *_cv_*) { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: cache variable $ac_var contains a newline" >&5
$as_echo "$as_me: WARNING: cache variable $ac_var contains a newline" >&2;} ;;
esac
case $ac_var in #(
_ | IFS | as_nl) ;; #(
BASH_ARGV | BASH_SOURCE) eval $ac_var= ;; #(
- *) $as_unset $ac_var ;;
+ *) { eval $ac_var=; unset $ac_var;} ;;
esac ;;
esac
done
@@ -3827,8 +3484,8 @@ $as_echo "$as_me: WARNING: cache variable $ac_var contains a newline" >&2;} ;;
(set) 2>&1 |
case $as_nl`(ac_space=' '; set) 2>&1` in #(
*${as_nl}ac_space=\ *)
- # `set' does not quote correctly, so add quotes (double-quote
- # substitution turns \\\\ into \\, and sed turns \\ into \).
+ # `set' does not quote correctly, so add quotes: double-quote
+ # substitution turns \\\\ into \\, and sed turns \\ into \.
sed -n \
"s/'/'\\\\''/g;
s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1='\\2'/p"
@@ -3850,12 +3507,23 @@ $as_echo "$as_me: WARNING: cache variable $ac_var contains a newline" >&2;} ;;
:end' >>confcache
if diff "$cache_file" confcache >/dev/null 2>&1; then :; else
if test -w "$cache_file"; then
- test "x$cache_file" != "x/dev/null" &&
- { $as_echo "$as_me:$LINENO: updating cache $cache_file" >&5
+ if test "x$cache_file" != "x/dev/null"; then
+ { $as_echo "$as_me:${as_lineno-$LINENO}: updating cache $cache_file" >&5
$as_echo "$as_me: updating cache $cache_file" >&6;}
- cat confcache >$cache_file
+ if test ! -f "$cache_file" || test -h "$cache_file"; then
+ cat confcache >"$cache_file"
+ else
+ case $cache_file in #(
+ */* | ?:*)
+ mv -f confcache "$cache_file"$$ &&
+ mv -f "$cache_file"$$ "$cache_file" ;; #(
+ *)
+ mv -f confcache "$cache_file" ;;
+ esac
+ fi
+ fi
else
- { $as_echo "$as_me:$LINENO: not updating unwritable cache $cache_file" >&5
+ { $as_echo "$as_me:${as_lineno-$LINENO}: not updating unwritable cache $cache_file" >&5
$as_echo "$as_me: not updating unwritable cache $cache_file" >&6;}
fi
fi
@@ -3905,14 +3573,15 @@ DEFS=`sed -n "$ac_script" confdefs.h`
ac_libobjs=
ac_ltlibobjs=
+U=
for ac_i in : $LIBOBJS; do test "x$ac_i" = x: && continue
# 1. Remove the extension, and $U if already installed.
ac_script='s/\$U\././;s/\.o$//;s/\.obj$//'
ac_i=`$as_echo "$ac_i" | sed "$ac_script"`
# 2. Prepend LIBOBJDIR. When used with automake>=1.10 LIBOBJDIR
# will be set to the directory where LIBOBJS objects are built.
- ac_libobjs="$ac_libobjs \${LIBOBJDIR}$ac_i\$U.$ac_objext"
- ac_ltlibobjs="$ac_ltlibobjs \${LIBOBJDIR}$ac_i"'$U.lo'
+ as_fn_append ac_libobjs " \${LIBOBJDIR}$ac_i\$U.$ac_objext"
+ as_fn_append ac_ltlibobjs " \${LIBOBJDIR}$ac_i"'$U.lo'
done
LIBOBJS=$ac_libobjs
@@ -3920,13 +3589,14 @@ LTLIBOBJS=$ac_ltlibobjs
-: ${CONFIG_STATUS=./config.status}
+: "${CONFIG_STATUS=./config.status}"
ac_write_fail=0
ac_clean_files_save=$ac_clean_files
ac_clean_files="$ac_clean_files $CONFIG_STATUS"
-{ $as_echo "$as_me:$LINENO: creating $CONFIG_STATUS" >&5
+{ $as_echo "$as_me:${as_lineno-$LINENO}: creating $CONFIG_STATUS" >&5
$as_echo "$as_me: creating $CONFIG_STATUS" >&6;}
-cat >$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
+as_write_fail=0
+cat >$CONFIG_STATUS <<_ASEOF || as_write_fail=1
#! $SHELL
# Generated by $as_me.
# Run this file to recreate the current configuration.
@@ -3936,17 +3606,18 @@ cat >$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
debug=false
ac_cs_recheck=false
ac_cs_silent=false
-SHELL=\${CONFIG_SHELL-$SHELL}
-_ACEOF
-cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
-## --------------------- ##
-## M4sh Initialization. ##
-## --------------------- ##
+SHELL=\${CONFIG_SHELL-$SHELL}
+export SHELL
+_ASEOF
+cat >>$CONFIG_STATUS <<\_ASEOF || as_write_fail=1
+## -------------------- ##
+## M4sh Initialization. ##
+## -------------------- ##
# Be more Bourne compatible
DUALCASE=1; export DUALCASE # for MKS sh
-if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then
+if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then :
emulate sh
NULLCMD=:
# Pre-4.2 versions of Zsh do word splitting on ${1+"$@"}, which
@@ -3954,23 +3625,15 @@ if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then
alias -g '${1+"$@"}'='"$@"'
setopt NO_GLOB_SUBST
else
- case `(set -o) 2>/dev/null` in
- *posix*) set -o posix ;;
+ case `(set -o) 2>/dev/null` in #(
+ *posix*) :
+ set -o posix ;; #(
+ *) :
+ ;;
esac
-
fi
-
-
-# PATH needs CR
-# Avoid depending upon Character Ranges.
-as_cr_letters='abcdefghijklmnopqrstuvwxyz'
-as_cr_LETTERS='ABCDEFGHIJKLMNOPQRSTUVWXYZ'
-as_cr_Letters=$as_cr_letters$as_cr_LETTERS
-as_cr_digits='0123456789'
-as_cr_alnum=$as_cr_Letters$as_cr_digits
-
as_nl='
'
export as_nl
@@ -3978,7 +3641,13 @@ export as_nl
as_echo='\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\'
as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo
as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo$as_echo
-if (test "X`printf %s $as_echo`" = "X$as_echo") 2>/dev/null; then
+# Prefer a ksh shell builtin over an external printf program on Solaris,
+# but without wasting forks for bash or zsh.
+if test -z "$BASH_VERSION$ZSH_VERSION" \
+ && (test "X`print -r -- $as_echo`" = "X$as_echo") 2>/dev/null; then
+ as_echo='print -r --'
+ as_echo_n='print -rn --'
+elif (test "X`printf %s $as_echo`" = "X$as_echo") 2>/dev/null; then
as_echo='printf %s\n'
as_echo_n='printf %s'
else
@@ -3989,7 +3658,7 @@ else
as_echo_body='eval expr "X$1" : "X\\(.*\\)"'
as_echo_n_body='eval
arg=$1;
- case $arg in
+ case $arg in #(
*"$as_nl"*)
expr "X$arg" : "X\\(.*\\)$as_nl";
arg=`expr "X$arg" : ".*$as_nl\\(.*\\)"`;;
@@ -4012,13 +3681,6 @@ if test "${PATH_SEPARATOR+set}" != set; then
}
fi
-# Support unset when possible.
-if ( (MAIL=60; unset MAIL) || exit) >/dev/null 2>&1; then
- as_unset=unset
-else
- as_unset=false
-fi
-
# IFS
# We need space, tab and new line, in precisely that order. Quoting is
@@ -4028,15 +3690,16 @@ fi
IFS=" "" $as_nl"
# Find who we are. Look in the path if we contain no directory separator.
-case $0 in
+as_myself=
+case $0 in #((
*[\\/]* ) as_myself=$0 ;;
*) as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
- test -r "$as_dir/$0" && as_myself=$as_dir/$0 && break
-done
+ test -r "$as_dir/$0" && as_myself=$as_dir/$0 && break
+ done
IFS=$as_save_IFS
;;
@@ -4048,12 +3711,16 @@ if test "x$as_myself" = x; then
fi
if test ! -f "$as_myself"; then
$as_echo "$as_myself: error: cannot find myself; rerun with an absolute file name" >&2
- { (exit 1); exit 1; }
+ exit 1
fi
-# Work around bugs in pre-3.0 UWIN ksh.
-for as_var in ENV MAIL MAILPATH
-do ($as_unset $as_var) >/dev/null 2>&1 && $as_unset $as_var
+# Unset variables that we do not need and which cause bugs (e.g. in
+# pre-3.0 UWIN ksh). But do not cause bugs in bash 2.01; the "|| exit 1"
+# suppresses any "Segmentation fault" message there. '((' could
+# trigger a bug in pdksh 5.2.14.
+for as_var in BASH_ENV ENV MAIL MAILPATH
+do eval test x\${$as_var+set} = xset \
+ && ( (unset $as_var) || exit 1) >/dev/null 2>&1 && unset $as_var || :
done
PS1='$ '
PS2='> '
@@ -4065,7 +3732,89 @@ export LC_ALL
LANGUAGE=C
export LANGUAGE
-# Required to use basename.
+# CDPATH.
+(unset CDPATH) >/dev/null 2>&1 && unset CDPATH
+
+
+# as_fn_error STATUS ERROR [LINENO LOG_FD]
+# ----------------------------------------
+# Output "`basename $0`: error: ERROR" to stderr. If LINENO and LOG_FD are
+# provided, also output the error to LOG_FD, referencing LINENO. Then exit the
+# script with STATUS, using 1 if that was 0.
+as_fn_error ()
+{
+ as_status=$1; test $as_status -eq 0 && as_status=1
+ if test "$4"; then
+ as_lineno=${as_lineno-"$3"} as_lineno_stack=as_lineno_stack=$as_lineno_stack
+ $as_echo "$as_me:${as_lineno-$LINENO}: error: $2" >&$4
+ fi
+ $as_echo "$as_me: error: $2" >&2
+ as_fn_exit $as_status
+} # as_fn_error
+
+
+# as_fn_set_status STATUS
+# -----------------------
+# Set $? to STATUS, without forking.
+as_fn_set_status ()
+{
+ return $1
+} # as_fn_set_status
+
+# as_fn_exit STATUS
+# -----------------
+# Exit the shell with STATUS, even in a "trap 0" or "set -e" context.
+as_fn_exit ()
+{
+ set +e
+ as_fn_set_status $1
+ exit $1
+} # as_fn_exit
+
+# as_fn_unset VAR
+# ---------------
+# Portably unset VAR.
+as_fn_unset ()
+{
+ { eval $1=; unset $1;}
+}
+as_unset=as_fn_unset
+# as_fn_append VAR VALUE
+# ----------------------
+# Append the text in VALUE to the end of the definition contained in VAR. Take
+# advantage of any shell optimizations that allow amortized linear growth over
+# repeated appends, instead of the typical quadratic growth present in naive
+# implementations.
+if (eval "as_var=1; as_var+=2; test x\$as_var = x12") 2>/dev/null; then :
+ eval 'as_fn_append ()
+ {
+ eval $1+=\$2
+ }'
+else
+ as_fn_append ()
+ {
+ eval $1=\$$1\$2
+ }
+fi # as_fn_append
+
+# as_fn_arith ARG...
+# ------------------
+# Perform arithmetic evaluation on the ARGs, and store the result in the
+# global $as_val. Take advantage of shells that can avoid forks. The arguments
+# must be portable across $(()) and expr.
+if (eval "test \$(( 1 + 1 )) = 2") 2>/dev/null; then :
+ eval 'as_fn_arith ()
+ {
+ as_val=$(( $* ))
+ }'
+else
+ as_fn_arith ()
+ {
+ as_val=`expr "$@" || test $? -eq 1`
+ }
+fi # as_fn_arith
+
+
if expr a : '\(a\)' >/dev/null 2>&1 &&
test "X`expr 00001 : '.*\(...\)'`" = X001; then
as_expr=expr
@@ -4079,8 +3828,12 @@ else
as_basename=false
fi
+if (as_dir=`dirname -- /` && test "X$as_dir" = X/) >/dev/null 2>&1; then
+ as_dirname=dirname
+else
+ as_dirname=false
+fi
-# Name of the executable.
as_me=`$as_basename -- "$0" ||
$as_expr X/"$0" : '.*/\([^/][^/]*\)/*$' \| \
X"$0" : 'X\(//\)$' \| \
@@ -4100,76 +3853,25 @@ $as_echo X/"$0" |
}
s/.*/./; q'`
-# CDPATH.
-$as_unset CDPATH
-
-
-
- as_lineno_1=$LINENO
- as_lineno_2=$LINENO
- test "x$as_lineno_1" != "x$as_lineno_2" &&
- test "x`expr $as_lineno_1 + 1`" = "x$as_lineno_2" || {
-
- # Create $as_me.lineno as a copy of $as_myself, but with $LINENO
- # uniformly replaced by the line number. The first 'sed' inserts a
- # line-number line after each line using $LINENO; the second 'sed'
- # does the real work. The second script uses 'N' to pair each
- # line-number line with the line containing $LINENO, and appends
- # trailing '-' during substitution so that $LINENO is not a special
- # case at line end.
- # (Raja R Harinath suggested sed '=', and Paul Eggert wrote the
- # scripts with optimization help from Paolo Bonzini. Blame Lee
- # E. McMahon (1931-1989) for sed's syntax. :-)
- sed -n '
- p
- /[$]LINENO/=
- ' <$as_myself |
- sed '
- s/[$]LINENO.*/&-/
- t lineno
- b
- :lineno
- N
- :loop
- s/[$]LINENO\([^'$as_cr_alnum'_].*\n\)\(.*\)/\2\1\2/
- t loop
- s/-\n.*//
- ' >$as_me.lineno &&
- chmod +x "$as_me.lineno" ||
- { $as_echo "$as_me: error: cannot create $as_me.lineno; rerun with a POSIX shell" >&2
- { (exit 1); exit 1; }; }
-
- # Don't try to exec as it changes $[0], causing all sort of problems
- # (the dirname of $[0] is not the place where we might find the
- # original and so on. Autoconf is especially sensitive to this).
- . "./$as_me.lineno"
- # Exit status is that of the last command.
- exit
-}
-
-
-if (as_dir=`dirname -- /` && test "X$as_dir" = X/) >/dev/null 2>&1; then
- as_dirname=dirname
-else
- as_dirname=false
-fi
+# Avoid depending upon Character Ranges.
+as_cr_letters='abcdefghijklmnopqrstuvwxyz'
+as_cr_LETTERS='ABCDEFGHIJKLMNOPQRSTUVWXYZ'
+as_cr_Letters=$as_cr_letters$as_cr_LETTERS
+as_cr_digits='0123456789'
+as_cr_alnum=$as_cr_Letters$as_cr_digits
ECHO_C= ECHO_N= ECHO_T=
-case `echo -n x` in
+case `echo -n x` in #(((((
-n*)
- case `echo 'x\c'` in
+ case `echo 'xy\c'` in
*c*) ECHO_T=' ';; # ECHO_T is single tab character.
- *) ECHO_C='\c';;
+ xy) ECHO_C='\c';;
+ *) echo `echo ksh88 bug on AIX 6.1` > /dev/null
+ ECHO_T=' ';;
esac;;
*)
ECHO_N='-n';;
esac
-if expr a : '\(a\)' >/dev/null 2>&1 &&
- test "X`expr 00001 : '.*\(...\)'`" = X001; then
- as_expr=expr
-else
- as_expr=false
-fi
rm -f conf$$ conf$$.exe conf$$.file
if test -d conf$$.dir; then
@@ -4184,49 +3886,85 @@ if (echo >conf$$.file) 2>/dev/null; then
# ... but there are two gotchas:
# 1) On MSYS, both `ln -s file dir' and `ln file dir' fail.
# 2) DJGPP < 2.04 has no symlinks; `ln -s' creates a wrapper executable.
- # In both cases, we have to default to `cp -p'.
+ # In both cases, we have to default to `cp -pR'.
ln -s conf$$.file conf$$.dir 2>/dev/null && test ! -f conf$$.exe ||
- as_ln_s='cp -p'
+ as_ln_s='cp -pR'
elif ln conf$$.file conf$$ 2>/dev/null; then
as_ln_s=ln
else
- as_ln_s='cp -p'
+ as_ln_s='cp -pR'
fi
else
- as_ln_s='cp -p'
+ as_ln_s='cp -pR'
fi
rm -f conf$$ conf$$.exe conf$$.dir/conf$$.file conf$$.file
rmdir conf$$.dir 2>/dev/null
+
+# as_fn_mkdir_p
+# -------------
+# Create "$as_dir" as a directory, including parents if necessary.
+as_fn_mkdir_p ()
+{
+
+ case $as_dir in #(
+ -*) as_dir=./$as_dir;;
+ esac
+ test -d "$as_dir" || eval $as_mkdir_p || {
+ as_dirs=
+ while :; do
+ case $as_dir in #(
+ *\'*) as_qdir=`$as_echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #'(
+ *) as_qdir=$as_dir;;
+ esac
+ as_dirs="'$as_qdir' $as_dirs"
+ as_dir=`$as_dirname -- "$as_dir" ||
+$as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
+ X"$as_dir" : 'X\(//\)[^/]' \| \
+ X"$as_dir" : 'X\(//\)$' \| \
+ X"$as_dir" : 'X\(/\)' \| . 2>/dev/null ||
+$as_echo X"$as_dir" |
+ sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
+ s//\1/
+ q
+ }
+ /^X\(\/\/\)[^/].*/{
+ s//\1/
+ q
+ }
+ /^X\(\/\/\)$/{
+ s//\1/
+ q
+ }
+ /^X\(\/\).*/{
+ s//\1/
+ q
+ }
+ s/.*/./; q'`
+ test -d "$as_dir" && break
+ done
+ test -z "$as_dirs" || eval "mkdir $as_dirs"
+ } || test -d "$as_dir" || as_fn_error $? "cannot create directory $as_dir"
+
+
+} # as_fn_mkdir_p
if mkdir -p . 2>/dev/null; then
- as_mkdir_p=:
+ as_mkdir_p='mkdir -p "$as_dir"'
else
test -d ./-p && rmdir ./-p
as_mkdir_p=false
fi
-if test -x / >/dev/null 2>&1; then
- as_test_x='test -x'
-else
- if ls -dL / >/dev/null 2>&1; then
- as_ls_L_option=L
- else
- as_ls_L_option=
- fi
- as_test_x='
- eval sh -c '\''
- if test -d "$1"; then
- test -d "$1/.";
- else
- case $1 in
- -*)set "./$1";;
- esac;
- case `ls -ld'$as_ls_L_option' "$1" 2>/dev/null` in
- ???[sx]*):;;*)false;;esac;fi
- '\'' sh
- '
-fi
-as_executable_p=$as_test_x
+
+# as_fn_executable_p FILE
+# -----------------------
+# Test if FILE is an executable regular file.
+as_fn_executable_p ()
+{
+ test -f "$1" && test -x "$1"
+} # as_fn_executable_p
+as_test_x='test -x'
+as_executable_p=as_fn_executable_p
# Sed expression to map a string onto a valid CPP name.
as_tr_cpp="eval sed 'y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g'"
@@ -4236,13 +3974,19 @@ as_tr_sh="eval sed 'y%*+%pp%;s%[^_$as_cr_alnum]%_%g'"
exec 6>&1
+## ----------------------------------- ##
+## Main body of $CONFIG_STATUS script. ##
+## ----------------------------------- ##
+_ASEOF
+test $as_write_fail = 0 && chmod +x $CONFIG_STATUS || ac_write_fail=1
-# Save the log message, to keep $[0] and so on meaningful, and to
+cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
+# Save the log message, to keep $0 and so on meaningful, and to
# report actual input values of CONFIG_FILES etc. instead of their
# values after options handling.
ac_log="
This file was extended by $as_me, which was
-generated by GNU Autoconf 2.63. Invocation command line was
+generated by GNU Autoconf 2.69. Invocation command line was
CONFIG_FILES = $CONFIG_FILES
CONFIG_HEADERS = $CONFIG_HEADERS
@@ -4269,13 +4013,15 @@ _ACEOF
cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
ac_cs_usage="\
-\`$as_me' instantiates files from templates according to the
-current configuration.
+\`$as_me' instantiates files and other configuration actions
+from templates according to the current configuration. Unless the files
+and actions are specified as TAGs, all are instantiated by default.
-Usage: $0 [OPTION]... [FILE]...
+Usage: $0 [OPTION]... [TAG]...
-h, --help print this help, then exit
-V, --version print version number and configuration settings, then exit
+ --config print configuration, then exit
-q, --quiet, --silent
do not print progress messages
-d, --debug don't remove temporary files
@@ -4286,16 +4032,17 @@ Usage: $0 [OPTION]... [FILE]...
Configuration files:
$config_files
-Report bugs to <bug-autoconf at gnu.org>."
+Report bugs to the package provider."
_ACEOF
cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
+ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
ac_cs_version="\\
config.status
-configured by $0, generated by GNU Autoconf 2.63,
- with options \\"`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`\\"
+configured by $0, generated by GNU Autoconf 2.69,
+ with options \\"\$ac_cs_config\\"
-Copyright (C) 2008 Free Software Foundation, Inc.
+Copyright (C) 2012 Free Software Foundation, Inc.
This config.status script is free software; the Free Software Foundation
gives unlimited permission to copy, distribute and modify it."
@@ -4310,11 +4057,16 @@ ac_need_defaults=:
while test $# != 0
do
case $1 in
- --*=*)
+ --*=?*)
ac_option=`expr "X$1" : 'X\([^=]*\)='`
ac_optarg=`expr "X$1" : 'X[^=]*=\(.*\)'`
ac_shift=:
;;
+ --*=)
+ ac_option=`expr "X$1" : 'X\([^=]*\)='`
+ ac_optarg=
+ ac_shift=:
+ ;;
*)
ac_option=$1
ac_optarg=$2
@@ -4328,14 +4080,17 @@ do
ac_cs_recheck=: ;;
--version | --versio | --versi | --vers | --ver | --ve | --v | -V )
$as_echo "$ac_cs_version"; exit ;;
+ --config | --confi | --conf | --con | --co | --c )
+ $as_echo "$ac_cs_config"; exit ;;
--debug | --debu | --deb | --de | --d | -d )
debug=: ;;
--file | --fil | --fi | --f )
$ac_shift
case $ac_optarg in
*\'*) ac_optarg=`$as_echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"` ;;
+ '') as_fn_error $? "missing file argument" ;;
esac
- CONFIG_FILES="$CONFIG_FILES '$ac_optarg'"
+ as_fn_append CONFIG_FILES " '$ac_optarg'"
ac_need_defaults=false;;
--he | --h | --help | --hel | -h )
$as_echo "$ac_cs_usage"; exit ;;
@@ -4344,11 +4099,10 @@ do
ac_cs_silent=: ;;
# This is an error.
- -*) { $as_echo "$as_me: error: unrecognized option: $1
-Try \`$0 --help' for more information." >&2
- { (exit 1); exit 1; }; } ;;
+ -*) as_fn_error $? "unrecognized option: \`$1'
+Try \`$0 --help' for more information." ;;
- *) ac_config_targets="$ac_config_targets $1"
+ *) as_fn_append ac_config_targets " $1"
ac_need_defaults=false ;;
esac
@@ -4365,7 +4119,7 @@ fi
_ACEOF
cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
if \$ac_cs_recheck; then
- set X '$SHELL' '$0' $ac_configure_args \$ac_configure_extra_args --no-create --no-recursion
+ set X $SHELL '$0' $ac_configure_args \$ac_configure_extra_args --no-create --no-recursion
shift
\$as_echo "running CONFIG_SHELL=$SHELL \$*" >&6
CONFIG_SHELL='$SHELL'
@@ -4396,9 +4150,7 @@ do
case $ac_config_target in
"src/Makevars") CONFIG_FILES="$CONFIG_FILES src/Makevars" ;;
- *) { { $as_echo "$as_me:$LINENO: error: invalid argument: $ac_config_target" >&5
-$as_echo "$as_me: error: invalid argument: $ac_config_target" >&2;}
- { (exit 1); exit 1; }; };;
+ *) as_fn_error $? "invalid argument: \`$ac_config_target'" "$LINENO" 5;;
esac
done
@@ -4419,26 +4171,24 @@ fi
# after its creation but before its name has been assigned to `$tmp'.
$debug ||
{
- tmp=
+ tmp= ac_tmp=
trap 'exit_status=$?
- { test -z "$tmp" || test ! -d "$tmp" || rm -fr "$tmp"; } && exit $exit_status
+ : "${ac_tmp:=$tmp}"
+ { test ! -d "$ac_tmp" || rm -fr "$ac_tmp"; } && exit $exit_status
' 0
- trap '{ (exit 1); exit 1; }' 1 2 13 15
+ trap 'as_fn_exit 1' 1 2 13 15
}
# Create a (secure) tmp directory for tmp files.
{
tmp=`(umask 077 && mktemp -d "./confXXXXXX") 2>/dev/null` &&
- test -n "$tmp" && test -d "$tmp"
+ test -d "$tmp"
} ||
{
tmp=./conf$$-$RANDOM
(umask 077 && mkdir "$tmp")
-} ||
-{
- $as_echo "$as_me: cannot create a temporary directory in ." >&2
- { (exit 1); exit 1; }
-}
+} || as_fn_error $? "cannot create a temporary directory in ." "$LINENO" 5
+ac_tmp=$tmp
# Set up the scripts for CONFIG_FILES section.
# No need to generate them if there are no CONFIG_FILES.
@@ -4446,7 +4196,13 @@ $debug ||
if test -n "$CONFIG_FILES"; then
-ac_cr='
'
+ac_cr=`echo X | tr X '\015'`
+# On cygwin, bash can eat \r inside `` if the user requested igncr.
+# But we know of no other shell where ac_cr would be empty at this
+# point, so we can use a bashism as a fallback.
+if test "x$ac_cr" = x; then
+ eval ac_cr=\$\'\\r\'
+fi
ac_cs_awk_cr=`$AWK 'BEGIN { print "a\rb" }' </dev/null 2>/dev/null`
if test "$ac_cs_awk_cr" = "a${ac_cr}b"; then
ac_cs_awk_cr='\\r'
@@ -4454,7 +4210,7 @@ else
ac_cs_awk_cr=$ac_cr
fi
-echo 'BEGIN {' >"$tmp/subs1.awk" &&
+echo 'BEGIN {' >"$ac_tmp/subs1.awk" &&
_ACEOF
@@ -4463,24 +4219,18 @@ _ACEOF
echo "$ac_subst_vars" | sed 's/.*/&!$&$ac_delim/' &&
echo "_ACEOF"
} >conf$$subs.sh ||
- { { $as_echo "$as_me:$LINENO: error: could not make $CONFIG_STATUS" >&5
-$as_echo "$as_me: error: could not make $CONFIG_STATUS" >&2;}
- { (exit 1); exit 1; }; }
-ac_delim_num=`echo "$ac_subst_vars" | grep -c '$'`
+ as_fn_error $? "could not make $CONFIG_STATUS" "$LINENO" 5
+ac_delim_num=`echo "$ac_subst_vars" | grep -c '^'`
ac_delim='%!_!# '
for ac_last_try in false false false false false :; do
. ./conf$$subs.sh ||
- { { $as_echo "$as_me:$LINENO: error: could not make $CONFIG_STATUS" >&5
-$as_echo "$as_me: error: could not make $CONFIG_STATUS" >&2;}
- { (exit 1); exit 1; }; }
+ as_fn_error $? "could not make $CONFIG_STATUS" "$LINENO" 5
ac_delim_n=`sed -n "s/.*$ac_delim\$/X/p" conf$$subs.awk | grep -c X`
if test $ac_delim_n = $ac_delim_num; then
break
elif $ac_last_try; then
- { { $as_echo "$as_me:$LINENO: error: could not make $CONFIG_STATUS" >&5
-$as_echo "$as_me: error: could not make $CONFIG_STATUS" >&2;}
- { (exit 1); exit 1; }; }
+ as_fn_error $? "could not make $CONFIG_STATUS" "$LINENO" 5
else
ac_delim="$ac_delim!$ac_delim _$ac_delim!! "
fi
@@ -4488,7 +4238,7 @@ done
rm -f conf$$subs.sh
cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
-cat >>"\$tmp/subs1.awk" <<\\_ACAWK &&
+cat >>"\$ac_tmp/subs1.awk" <<\\_ACAWK &&
_ACEOF
sed -n '
h
@@ -4502,7 +4252,7 @@ s/'"$ac_delim"'$//
t delim
:nl
h
-s/\(.\{148\}\).*/\1/
+s/\(.\{148\}\)..*/\1/
t more1
s/["\\]/\\&/g; s/^/"/; s/$/\\n"\\/
p
@@ -4516,7 +4266,7 @@ s/.\{148\}//
t nl
:delim
h
-s/\(.\{148\}\).*/\1/
+s/\(.\{148\}\)..*/\1/
t more2
s/["\\]/\\&/g; s/^/"/; s/$/"/
p
@@ -4536,7 +4286,7 @@ t delim
rm -f conf$$subs.awk
cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
_ACAWK
-cat >>"\$tmp/subs1.awk" <<_ACAWK &&
+cat >>"\$ac_tmp/subs1.awk" <<_ACAWK &&
for (key in S) S_is_set[key] = 1
FS = ""
@@ -4568,23 +4318,29 @@ if sed "s/$ac_cr//" < /dev/null > /dev/null 2>&1; then
sed "s/$ac_cr\$//; s/$ac_cr/$ac_cs_awk_cr/g"
else
cat
-fi < "$tmp/subs1.awk" > "$tmp/subs.awk" \
- || { { $as_echo "$as_me:$LINENO: error: could not setup config files machinery" >&5
-$as_echo "$as_me: error: could not setup config files machinery" >&2;}
- { (exit 1); exit 1; }; }
+fi < "$ac_tmp/subs1.awk" > "$ac_tmp/subs.awk" \
+ || as_fn_error $? "could not setup config files machinery" "$LINENO" 5
_ACEOF
-# VPATH may cause trouble with some makes, so we remove $(srcdir),
-# ${srcdir} and @srcdir@ from VPATH if srcdir is ".", strip leading and
+# VPATH may cause trouble with some makes, so we remove sole $(srcdir),
+# ${srcdir} and @srcdir@ entries from VPATH if srcdir is ".", strip leading and
# trailing colons and then remove the whole line if VPATH becomes empty
# (actually we leave an empty line to preserve line numbers).
if test "x$srcdir" = x.; then
- ac_vpsub='/^[ ]*VPATH[ ]*=/{
-s/:*\$(srcdir):*/:/
-s/:*\${srcdir}:*/:/
-s/:*@srcdir@:*/:/
-s/^\([^=]*=[ ]*\):*/\1/
+ ac_vpsub='/^[ ]*VPATH[ ]*=[ ]*/{
+h
+s///
+s/^/:/
+s/[ ]*$/:/
+s/:\$(srcdir):/:/g
+s/:\${srcdir}:/:/g
+s/:@srcdir@:/:/g
+s/^:*//
s/:*$//
+x
+s/\(=[ ]*\).*/\1/
+G
+s/\n//
s/^[^=]*=[ ]*$//
}'
fi
@@ -4602,9 +4358,7 @@ do
esac
case $ac_mode$ac_tag in
:[FHL]*:*);;
- :L* | :C*:*) { { $as_echo "$as_me:$LINENO: error: invalid tag $ac_tag" >&5
-$as_echo "$as_me: error: invalid tag $ac_tag" >&2;}
- { (exit 1); exit 1; }; };;
+ :L* | :C*:*) as_fn_error $? "invalid tag \`$ac_tag'" "$LINENO" 5;;
:[FH]-) ac_tag=-:-;;
:[FH]*) ac_tag=$ac_tag:$ac_tag.in;;
esac
@@ -4623,7 +4377,7 @@ $as_echo "$as_me: error: invalid tag $ac_tag" >&2;}
for ac_f
do
case $ac_f in
- -) ac_f="$tmp/stdin";;
+ -) ac_f="$ac_tmp/stdin";;
*) # Look for the file first in the build tree, then in the source tree
# (if the path is not absolute). The absolute path cannot be DOS-style,
# because $ac_f cannot contain `:'.
@@ -4632,12 +4386,10 @@ $as_echo "$as_me: error: invalid tag $ac_tag" >&2;}
[\\/$]*) false;;
*) test -f "$srcdir/$ac_f" && ac_f="$srcdir/$ac_f";;
esac ||
- { { $as_echo "$as_me:$LINENO: error: cannot find input file: $ac_f" >&5
-$as_echo "$as_me: error: cannot find input file: $ac_f" >&2;}
- { (exit 1); exit 1; }; };;
+ as_fn_error 1 "cannot find input file: \`$ac_f'" "$LINENO" 5;;
esac
case $ac_f in *\'*) ac_f=`$as_echo "$ac_f" | sed "s/'/'\\\\\\\\''/g"`;; esac
- ac_file_inputs="$ac_file_inputs '$ac_f'"
+ as_fn_append ac_file_inputs " '$ac_f'"
done
# Let's still pretend it is `configure' which instantiates (i.e., don't
@@ -4648,7 +4400,7 @@ $as_echo "$as_me: error: cannot find input file: $ac_f" >&2;}
`' by configure.'
if test x"$ac_file" != x-; then
configure_input="$ac_file. $configure_input"
- { $as_echo "$as_me:$LINENO: creating $ac_file" >&5
+ { $as_echo "$as_me:${as_lineno-$LINENO}: creating $ac_file" >&5
$as_echo "$as_me: creating $ac_file" >&6;}
fi
# Neutralize special characters interpreted by sed in replacement strings.
@@ -4660,10 +4412,8 @@ $as_echo "$as_me: creating $ac_file" >&6;}
esac
case $ac_tag in
- *:-:* | *:-) cat >"$tmp/stdin" \
- || { { $as_echo "$as_me:$LINENO: error: could not create $ac_file" >&5
-$as_echo "$as_me: error: could not create $ac_file" >&2;}
- { (exit 1); exit 1; }; } ;;
+ *:-:* | *:-) cat >"$ac_tmp/stdin" \
+ || as_fn_error $? "could not create $ac_file" "$LINENO" 5 ;;
esac
;;
esac
@@ -4691,47 +4441,7 @@ $as_echo X"$ac_file" |
q
}
s/.*/./; q'`
- { as_dir="$ac_dir"
- case $as_dir in #(
- -*) as_dir=./$as_dir;;
- esac
- test -d "$as_dir" || { $as_mkdir_p && mkdir -p "$as_dir"; } || {
- as_dirs=
- while :; do
- case $as_dir in #(
- *\'*) as_qdir=`$as_echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #'(
- *) as_qdir=$as_dir;;
- esac
- as_dirs="'$as_qdir' $as_dirs"
- as_dir=`$as_dirname -- "$as_dir" ||
-$as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
- X"$as_dir" : 'X\(//\)[^/]' \| \
- X"$as_dir" : 'X\(//\)$' \| \
- X"$as_dir" : 'X\(/\)' \| . 2>/dev/null ||
-$as_echo X"$as_dir" |
- sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
- s//\1/
- q
- }
- /^X\(\/\/\)[^/].*/{
- s//\1/
- q
- }
- /^X\(\/\/\)$/{
- s//\1/
- q
- }
- /^X\(\/\).*/{
- s//\1/
- q
- }
- s/.*/./; q'`
- test -d "$as_dir" && break
- done
- test -z "$as_dirs" || eval "mkdir $as_dirs"
- } || test -d "$as_dir" || { { $as_echo "$as_me:$LINENO: error: cannot create directory $as_dir" >&5
-$as_echo "$as_me: error: cannot create directory $as_dir" >&2;}
- { (exit 1); exit 1; }; }; }
+ as_dir="$ac_dir"; as_fn_mkdir_p
ac_builddir=.
case "$ac_dir" in
@@ -4779,7 +4489,6 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
# If the template does not know about datarootdir, expand it.
# FIXME: This hack should be removed a few years after 2.60.
ac_datarootdir_hack=; ac_datarootdir_seen=
-
ac_sed_dataroot='
/datarootdir/ {
p
@@ -4789,12 +4498,11 @@ ac_sed_dataroot='
/@docdir@/p
/@infodir@/p
/@localedir@/p
-/@mandir@/p
-'
+/@mandir@/p'
case `eval "sed -n \"\$ac_sed_dataroot\" $ac_file_inputs"` in
*datarootdir*) ac_datarootdir_seen=yes;;
*@datadir@*|*@docdir@*|*@infodir@*|*@localedir@*|*@mandir@*)
- { $as_echo "$as_me:$LINENO: WARNING: $ac_file_inputs seems to ignore the --datarootdir setting" >&5
+ { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: $ac_file_inputs seems to ignore the --datarootdir setting" >&5
$as_echo "$as_me: WARNING: $ac_file_inputs seems to ignore the --datarootdir setting" >&2;}
_ACEOF
cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
@@ -4804,7 +4512,7 @@ cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
s&@infodir@&$infodir&g
s&@localedir@&$localedir&g
s&@mandir@&$mandir&g
- s&\\\${datarootdir}&$datarootdir&g' ;;
+ s&\\\${datarootdir}&$datarootdir&g' ;;
esac
_ACEOF
@@ -4830,27 +4538,24 @@ s&@abs_builddir@&$ac_abs_builddir&;t t
s&@abs_top_builddir@&$ac_abs_top_builddir&;t t
$ac_datarootdir_hack
"
-eval sed \"\$ac_sed_extra\" "$ac_file_inputs" | $AWK -f "$tmp/subs.awk" >$tmp/out \
- || { { $as_echo "$as_me:$LINENO: error: could not create $ac_file" >&5
-$as_echo "$as_me: error: could not create $ac_file" >&2;}
- { (exit 1); exit 1; }; }
+eval sed \"\$ac_sed_extra\" "$ac_file_inputs" | $AWK -f "$ac_tmp/subs.awk" \
+ >$ac_tmp/out || as_fn_error $? "could not create $ac_file" "$LINENO" 5
test -z "$ac_datarootdir_hack$ac_datarootdir_seen" &&
- { ac_out=`sed -n '/\${datarootdir}/p' "$tmp/out"`; test -n "$ac_out"; } &&
- { ac_out=`sed -n '/^[ ]*datarootdir[ ]*:*=/p' "$tmp/out"`; test -z "$ac_out"; } &&
- { $as_echo "$as_me:$LINENO: WARNING: $ac_file contains a reference to the variable \`datarootdir'
-which seems to be undefined. Please make sure it is defined." >&5
+ { ac_out=`sed -n '/\${datarootdir}/p' "$ac_tmp/out"`; test -n "$ac_out"; } &&
+ { ac_out=`sed -n '/^[ ]*datarootdir[ ]*:*=/p' \
+ "$ac_tmp/out"`; test -z "$ac_out"; } &&
+ { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: $ac_file contains a reference to the variable \`datarootdir'
+which seems to be undefined. Please make sure it is defined" >&5
$as_echo "$as_me: WARNING: $ac_file contains a reference to the variable \`datarootdir'
-which seems to be undefined. Please make sure it is defined." >&2;}
+which seems to be undefined. Please make sure it is defined" >&2;}
- rm -f "$tmp/stdin"
+ rm -f "$ac_tmp/stdin"
case $ac_file in
- -) cat "$tmp/out" && rm -f "$tmp/out";;
- *) rm -f "$ac_file" && mv "$tmp/out" "$ac_file";;
+ -) cat "$ac_tmp/out" && rm -f "$ac_tmp/out";;
+ *) rm -f "$ac_file" && mv "$ac_tmp/out" "$ac_file";;
esac \
- || { { $as_echo "$as_me:$LINENO: error: could not create $ac_file" >&5
-$as_echo "$as_me: error: could not create $ac_file" >&2;}
- { (exit 1); exit 1; }; }
+ || as_fn_error $? "could not create $ac_file" "$LINENO" 5
;;
@@ -4860,15 +4565,12 @@ $as_echo "$as_me: error: could not create $ac_file" >&2;}
done # for ac_tag
-{ (exit 0); exit 0; }
+as_fn_exit 0
_ACEOF
-chmod +x $CONFIG_STATUS
ac_clean_files=$ac_clean_files_save
test $ac_write_fail = 0 ||
- { { $as_echo "$as_me:$LINENO: error: write failure creating $CONFIG_STATUS" >&5
-$as_echo "$as_me: error: write failure creating $CONFIG_STATUS" >&2;}
- { (exit 1); exit 1; }; }
+ as_fn_error $? "write failure creating $CONFIG_STATUS" "$LINENO" 5
# configure is writing to config.log, and then calls config.status.
@@ -4889,10 +4591,10 @@ if test "$no_create" != yes; then
exec 5>>config.log
# Use ||, not &&, to avoid exiting from the if with $? = 1, which
# would make configure fail if this is the last instruction.
- $ac_cs_success || { (exit 1); exit 1; }
+ $ac_cs_success || as_fn_exit 1
fi
if test -n "$ac_unrecognized_opts" && test "$enable_option_checking" != no; then
- { $as_echo "$as_me:$LINENO: WARNING: unrecognized options: $ac_unrecognized_opts" >&5
+ { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: unrecognized options: $ac_unrecognized_opts" >&5
$as_echo "$as_me: WARNING: unrecognized options: $ac_unrecognized_opts" >&2;}
fi
diff --git a/configure.in b/configure.in
index 28421ea..aae0117 100755
--- a/configure.in
+++ b/configure.in
@@ -1,12 +1,6 @@
dnl
-dnl Configuration things for affyR.
-dnl (http://www.cbs.dtu.dk/laurent/download/affyR/
-dnl What is below (and in the other configuration fiels
-dnl was taken from different configuration scripts for R version 1.3.0.
+dnl Configuration things for affyio
dnl
-dnl Acknowledgments: The author(s) of the R configure scripts, Kurt Hornik for the tip with autoconf.
-dnl
-dnl Laurent 2001
AC_INIT("DESCRIPTION")
@@ -18,6 +12,8 @@ dnl (taken from the 'writing R extensions manual')
R_ZLIB
+AC_LANG(C)
+
AC_CHECK_LIB(pthread, pthread_create)
@@ -27,25 +23,48 @@ AC_MSG_CHECKING([if we can use pthreads])
AC_MSG_RESULT($use_pthreads)
AC_MSG_CHECKING([if PTHREAD_STACK_MIN is defined])
-AC_COMPILE_IFELSE([
+AC_COMPILE_IFELSE([AC_LANG_SOURCE([
#include <pthread.h>
#include <limits.h>
int main () {size_t stacksize = PTHREAD_STACK_MIN + 0x4000;
}
- ],[use_pthread_stack_min=yes], [use_pthread_stack_min=no])
+ ])],[use_pthread_stack_min=yes], [use_pthread_stack_min=no])
AC_MSG_RESULT($use_pthread_stack_min)
-if test "x$use_pthreads" = "xyes"
-then
-if test "x$use_pthread_stack_min" = "xyes"
- then
- LIBS="$LIBS -lpthread"
- AC_DEFINE(USE_PTHREADS, 1)
- fi
+if test "x$use_pthread_stack_min" = xno; then
+ use_pthreads=no
fi
+AC_ARG_ENABLE([threading],
+ AS_HELP_STRING([--disable-threading],[Disable threading]))
+
+
+AS_IF([test "x$enable_threading" != "xno" ],[
+ if test "x${use_pthreads}" = "xno"; then
+ AC_MSG_NOTICE(------------------------------------------)
+ AC_MSG_NOTICE( Unable to find pthreads on this system. )
+ AC_MSG_NOTICE( Building a single-threaded version. )
+ AC_MSG_NOTICE(------------------------------------------)
+ fi
+
+
+ if test "x${use_pthreads}" = "xyes"; then
+ AC_MSG_NOTICE(Enabling threading for affyio)
+ AC_DEFINE(USE_PTHREADS, 1)
+ fi
+ ],
+ [
+ AC_MSG_NOTICE(Disabling threading for affyio)
+ ])
+
+
+
+
+
+
+
AC_OUTPUT(src/Makevars)
diff --git a/src/Makevars b/src/Makevars
index 0123270..159bea6 100644
--- a/src/Makevars
+++ b/src/Makevars
@@ -1,3 +1,3 @@
PKG_CFLAGS = -g -O2
-PKG_LIBS = -lpthread -lz -lpthread
-PKG_CPPFLAGS = -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1
+PKG_LIBS = -lpthread -lz
+PKG_CPPFLAGS = -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1
diff --git a/src/fread_functions.c b/src/fread_functions.c
index b6d4ddd..9abb465 100644
--- a/src/fread_functions.c
+++ b/src/fread_functions.c
@@ -407,7 +407,7 @@ size_t fread_be_double64(double *destination, int n, FILE *instream){
************************************************************************/
-size_t gzread_int32(int *destination, int n, gzFile *instream){
+size_t gzread_int32(int *destination, int n, gzFile instream){
size_t result;
@@ -431,7 +431,7 @@ size_t gzread_int32(int *destination, int n, gzFile *instream){
-size_t gzread_uint32(unsigned int *destination, int n, gzFile *instream){
+size_t gzread_uint32(unsigned int *destination, int n, gzFile instream){
size_t result;
@@ -452,7 +452,7 @@ size_t gzread_uint32(unsigned int *destination, int n, gzFile *instream){
-size_t gzread_int16(short *destination, int n, gzFile *instream){
+size_t gzread_int16(short *destination, int n, gzFile instream){
size_t result;
result = gzread(instream,destination,sizeof(short)*n);
@@ -470,7 +470,7 @@ size_t gzread_int16(short *destination, int n, gzFile *instream){
-size_t gzread_uint16(unsigned short *destination, int n, gzFile *instream){
+size_t gzread_uint16(unsigned short *destination, int n, gzFile instream){
size_t result;
result = gzread(instream,destination,sizeof(unsigned short)*n);
@@ -489,7 +489,7 @@ size_t gzread_uint16(unsigned short *destination, int n, gzFile *instream){
-size_t gzread_float32(float *destination, int n, gzFile *instream){
+size_t gzread_float32(float *destination, int n, gzFile instream){
size_t result;
@@ -506,7 +506,7 @@ size_t gzread_float32(float *destination, int n, gzFile *instream){
return result;
}
-size_t gzread_char(char *destination, int n, gzFile *instream){
+size_t gzread_char(char *destination, int n, gzFile instream){
size_t result;
@@ -522,7 +522,7 @@ size_t gzread_char(char *destination, int n, gzFile *instream){
}
-size_t gzread_uchar(unsigned char *destination, int n, gzFile *instream){
+size_t gzread_uchar(unsigned char *destination, int n, gzFile instream){
size_t result;
@@ -540,7 +540,7 @@ size_t gzread_uchar(unsigned char *destination, int n, gzFile *instream){
-size_t gzread_double64(double *destination, int n, gzFile *instream){
+size_t gzread_double64(double *destination, int n, gzFile instream){
size_t result;
@@ -568,7 +568,7 @@ size_t gzread_double64(double *destination, int n, gzFile *instream){
************************************************************************/
-size_t gzread_be_int32(int *destination, int n, gzFile *instream){
+size_t gzread_be_int32(int *destination, int n, gzFile instream){
size_t result;
@@ -592,7 +592,7 @@ size_t gzread_be_int32(int *destination, int n, gzFile *instream){
-size_t gzread_be_uint32(unsigned int *destination, int n, gzFile *instream){
+size_t gzread_be_uint32(unsigned int *destination, int n, gzFile instream){
size_t result;
@@ -614,7 +614,7 @@ size_t gzread_be_uint32(unsigned int *destination, int n, gzFile *instream){
-size_t gzread_be_int16(short *destination, int n, gzFile *instream){
+size_t gzread_be_int16(short *destination, int n, gzFile instream){
size_t result;
result = gzread(instream,destination,sizeof(short)*n);
@@ -630,7 +630,7 @@ size_t gzread_be_int16(short *destination, int n, gzFile *instream){
}
-size_t gzread_be_uint16(unsigned short *destination, int n, gzFile *instream){
+size_t gzread_be_uint16(unsigned short *destination, int n, gzFile instream){
size_t result;
result = gzread(instream,destination,sizeof(unsigned short)*n);
@@ -648,7 +648,7 @@ size_t gzread_be_uint16(unsigned short *destination, int n, gzFile *instream){
-size_t gzread_be_float32(float *destination, int n, gzFile *instream){
+size_t gzread_be_float32(float *destination, int n, gzFile instream){
size_t result;
@@ -666,7 +666,7 @@ size_t gzread_be_float32(float *destination, int n, gzFile *instream){
}
-size_t gzread_be_char(char *destination, int n, gzFile *instream){
+size_t gzread_be_char(char *destination, int n, gzFile instream){
size_t result;
@@ -683,7 +683,7 @@ size_t gzread_be_char(char *destination, int n, gzFile *instream){
-size_t gzread_be_uchar(unsigned char *destination, int n, gzFile *instream){
+size_t gzread_be_uchar(unsigned char *destination, int n, gzFile instream){
size_t result;
@@ -699,7 +699,7 @@ size_t gzread_be_uchar(unsigned char *destination, int n, gzFile *instream){
}
-size_t gzread_be_double64(double *destination, int n, gzFile *instream){
+size_t gzread_be_double64(double *destination, int n, gzFile instream){
size_t result;
diff --git a/src/fread_functions.h b/src/fread_functions.h
index a01e3cb..6ca5222 100644
--- a/src/fread_functions.h
+++ b/src/fread_functions.h
@@ -36,23 +36,23 @@ size_t fread_be_double64(double *destination, int n, FILE *instream);
size_t fread_be_wchar(wchar_t *destination, int n, FILE *instream);
#if defined(HAVE_ZLIB)
-size_t gzread_int32(int *destination, int n, gzFile *instream);
-size_t gzread_uint32(unsigned int *destination, int n, gzFile *instream);
-size_t gzread_int16(short *destination, int n, gzFile *instream);
-size_t gzread_uint16(unsigned short *destination, int n, gzFile *instream);
-size_t gzread_float32(float *destination, int n, gzFile *instream);
-size_t gzread_char(char *destination, int n, gzFile *instream);
-size_t gzread_uchar(unsigned char *destination, int n, gzFile *instream);
-size_t gzread_double64(double *destination, int n, gzFile *instream);
-
-size_t gzread_be_int32(int *destination, int n, gzFile *instream);
-size_t gzread_be_uint32(unsigned int *destination, int n, gzFile *instream);
-size_t gzread_be_int16(short *destination, int n, gzFile *instream);
-size_t gzread_be_uint16(unsigned short *destination, int n, gzFile *instream);
-size_t gzread_be_float32(float *destination, int n, gzFile *instream);
-size_t gzread_be_char(char *destination, int n, gzFile *instream);
-size_t gzread_be_uchar(unsigned char *destination, int n, gzFile *instream);
-size_t gzread_be_double64(double *destination, int n, gzFile *instream);
+size_t gzread_int32(int *destination, int n, gzFile instream);
+size_t gzread_uint32(unsigned int *destination, int n, gzFile instream);
+size_t gzread_int16(short *destination, int n, gzFile instream);
+size_t gzread_uint16(unsigned short *destination, int n, gzFile instream);
+size_t gzread_float32(float *destination, int n, gzFile instream);
+size_t gzread_char(char *destination, int n, gzFile instream);
+size_t gzread_uchar(unsigned char *destination, int n, gzFile instream);
+size_t gzread_double64(double *destination, int n, gzFile instream);
+
+size_t gzread_be_int32(int *destination, int n, gzFile instream);
+size_t gzread_be_uint32(unsigned int *destination, int n, gzFile instream);
+size_t gzread_be_int16(short *destination, int n, gzFile instream);
+size_t gzread_be_uint16(unsigned short *destination, int n, gzFile instream);
+size_t gzread_be_float32(float *destination, int n, gzFile instream);
+size_t gzread_be_char(char *destination, int n, gzFile instream);
+size_t gzread_be_uchar(unsigned char *destination, int n, gzFile instream);
+size_t gzread_be_double64(double *destination, int n, gzFile instream);
#endif
diff --git a/src/read_abatch.c b/src/read_abatch.c
index 463bef3..6731f71 100644
--- a/src/read_abatch.c
+++ b/src/read_abatch.c
@@ -151,6 +151,8 @@
** Nov 10, 2009 - Pthread on solaris fix
** May 26, 2010 - Multichannel CEL file support initiated
** Sept 18, 2013 - improve 64bit support for read_abatch
+ ** Jun 22, 2016 - Define PTHREAD_STACK_MIN if missing (e.g. Intel compiler) (DCT)
+ ** Sept 4, 2017 - change gzFile* to gzFile
**
*************************************************************/
@@ -177,6 +179,13 @@
#include <limits.h>
#include <unistd.h>
+
+// Intel Compiler doesn't have PTHREAD_STACK_MIN in limits.h
+//Set to 16K - (Linux standard for x86 / x86_64 (4 x 4K pages)
+#ifndef PTHREAD_STACK_MIN
+#define PTHREAD_STACK_MIN 16384
+#endif
+
pthread_mutex_t mutex_R;
int n_probesets;
int *n_probes = NULL;
@@ -732,7 +741,7 @@ static int read_cel_file_stddev(const char *filename, double *intensity, size_t
#endif
size_t i, cur_x,cur_y,cur_index;
- double cur_mean, cur_stddev;
+ double cur_stddev;
FILE *currentFile;
char buffer[BUF_SIZE];
/* tokenset *cur_tokenset;*/
@@ -785,7 +794,7 @@ static int read_cel_file_stddev(const char *filename, double *intensity, size_t
Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows);
break;
}
- cur_mean = atof(current_token);
+
#if USE_PTHREADS
current_token = strtok_r(NULL," \t",&tmp_pointer);
#else
@@ -838,7 +847,7 @@ static int read_cel_file_npixels(const char *filename, double *intensity, size_t
#endif
size_t i, cur_x,cur_y,cur_index,cur_npixels;
- double cur_mean, cur_stddev;
+
FILE *currentFile;
char buffer[BUF_SIZE];
/* tokenset *cur_tokenset;*/
@@ -892,7 +901,7 @@ static int read_cel_file_npixels(const char *filename, double *intensity, size_t
break;
}
- cur_mean = atof(current_token);
+
#if USE_PTHREADS
current_token = strtok_r(NULL," \t",&tmp_pointer);
@@ -903,7 +912,7 @@ static int read_cel_file_npixels(const char *filename, double *intensity, size_t
Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows);
break;
}
- cur_stddev = atof(current_token);
+
#if USE_PTHREADS
current_token = strtok_r(NULL," \t",&tmp_pointer);
@@ -1400,7 +1409,7 @@ static gzFile open_gz_cel_file(const char *filename){
/******************************************************************
**
- ** void gzfindStartsWith(gzFile *my_file,char *starts, char *buffer)
+ ** void gzfindStartsWith(gzFile my_file,char *starts, char *buffer)
**
** FILE *my_file - an open file to read from
** char *starts - the string to search for at the start of each line
@@ -1627,7 +1636,7 @@ static int read_gzcel_file_stddev(const char *filename, double *intensity, size_
#endif
size_t i, cur_x,cur_y,cur_index;
- double cur_mean, cur_stddev;
+ double cur_stddev;
gzFile currentFile;
char buffer[BUF_SIZE];
/* tokenset *cur_tokenset;*/
@@ -1679,7 +1688,7 @@ static int read_gzcel_file_stddev(const char *filename, double *intensity, size_
break;
}
- cur_mean = atof(current_token);
+
#if USE_PTHREADS
current_token = strtok_r(NULL," \t",&tmp_pointer);
#else
@@ -1732,7 +1741,7 @@ static int read_gzcel_file_npixels(const char *filename, double *intensity, size
#endif
size_t i, cur_x,cur_y,cur_index,cur_npixels;
- double cur_mean, cur_stddev;
+
gzFile currentFile;
char buffer[BUF_SIZE];
/* tokenset *cur_tokenset;*/
@@ -1780,7 +1789,7 @@ static int read_gzcel_file_npixels(const char *filename, double *intensity, size
Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows);
break;
}
- cur_mean = atof(current_token);
+
#if USE_PTHREADS
current_token = strtok_r(NULL," \t",&tmp_pointer);
#else
@@ -1790,7 +1799,7 @@ static int read_gzcel_file_npixels(const char *filename, double *intensity, size
Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows);
break;
}
- cur_stddev = atof(current_token);
+
#if USE_PTHREADS
current_token = strtok_r(NULL," \t",&tmp_pointer);
#else
@@ -1980,7 +1989,7 @@ static char *gz_get_header_info(const char *filename, int *dim1, int *dim2){
static void gz_get_detailed_header_info(const char *filename, detailed_header_info *header_info){
int i,endpos;
- gzFile *currentFile;
+ gzFile currentFile;
char buffer[BUF_SIZE];
char *buffercopy;
@@ -2090,7 +2099,7 @@ static void gz_get_detailed_header_info(const char *filename, detailed_header_in
static void gz_get_masks_outliers(const char *filename, int *nmasks, short **masks_x, short **masks_y, int *noutliers, short **outliers_x, short **outliers_y){
- gzFile *currentFile;
+ gzFile currentFile;
char buffer[BUF_SIZE];
int numcells, cur_x, cur_y;
tokenset *cur_tokenset;
@@ -2320,7 +2329,7 @@ typedef struct{
unsigned int n_masks;
int n_subgrids;
FILE *infile;
- gzFile *gzinfile;
+ gzFile gzinfile;
} binary_header;
@@ -3133,7 +3142,7 @@ static void binary_get_masks_outliers(const char *filename, int *nmasks, short *
static int isgzBinaryCelFile(const char *filename){
- gzFile *infile;
+ gzFile infile;
int magicnumber;
int version_number;
@@ -3183,7 +3192,7 @@ static int isgzBinaryCelFile(const char *filename){
static binary_header *gzread_binary_header(const char *filename, int return_stream){ /* , FILE *infile){ */
- gzFile *infile;
+ gzFile infile;
binary_header *this_header = Calloc(1,binary_header);
@@ -3594,7 +3603,7 @@ static int gzread_binarycel_file_intensities(const char *filename, double *inten
return 1;
}
if (cur_intensity->cur_intens < 0 || cur_intensity->cur_intens > 65536 || isnan(cur_intensity->cur_intens)){
- gzclose(my_header->infile);
+ gzclose(my_header->gzinfile);
delete_binary_header(my_header);
Free(cur_intensity);
return 1;
@@ -3689,7 +3698,7 @@ static int gzread_binarycel_file_npixels(const char *filename, double *intensity
fread_err+= gzread_float32(&(cur_intensity->cur_sd),1,my_header->gzinfile);
fread_err+= gzread_int16(&(cur_intensity->npixels),1,my_header->gzinfile);
if (fread_err < 3){
- gzclose(my_header->infile);
+ gzclose(my_header->gzinfile);
delete_binary_header(my_header);
Free(cur_intensity);
return 1;
@@ -3732,7 +3741,7 @@ static void gz_binary_apply_masks(const char *filename, double *intensity, size_
sizeofrecords = 2*sizeof(float) + sizeof(short); /* sizeof(celintens_record) */
//fseek(my_header->infile,my_header->n_cells*sizeofrecords,SEEK_CUR);
- gzseek(my_header->infile,my_header->n_cells*sizeofrecords,SEEK_CUR);
+ gzseek(my_header->gzinfile,my_header->n_cells*sizeofrecords,SEEK_CUR);
if (rm_mask){
for (i =0; i < my_header->n_masks; i++){
gzread_int16(&(cur_loc->x),1,my_header->gzinfile);
@@ -4366,7 +4375,7 @@ void checkFileCDF(SEXP filenames, int i, const char *cdfName, int ref_dim_1, int
void *readfile_group(void *data){
int num;
struct thread_data *args = (struct thread_data *) data;
- SEXP Current_intensity;
+
args->CurintensityMatrix = Calloc(args->ref_dim_1*args->ref_dim_2, double);
@@ -4435,7 +4444,11 @@ SEXP read_probeintensities(SEXP filenames, SEXP rm_mask, SEXP rm_outliers, SEXP
const char *cur_file_name;
const char *cdfName;
- double *CurintensityMatrix, *pmMatrix=0, *mmMatrix=0;
+ double *pmMatrix=0, *mmMatrix=0;
+
+#ifndef USE_PTHREADS
+ double *CurintensityMatrix;
+#endif
SEXP PM_intensity= R_NilValue, MM_intensity= R_NilValue, Current_intensity, names, dimnames;
SEXP output_list,pmmmnames;
@@ -4476,7 +4489,10 @@ SEXP read_probeintensities(SEXP filenames, SEXP rm_mask, SEXP rm_outliers, SEXP
PROTECT(Current_intensity = allocMatrix(REALSXP, ref_dim_1*ref_dim_2, 1));
cdfName = CHAR(STRING_ELT(ref_cdfName,0));
+
+#ifndef USE_PTHREADS
CurintensityMatrix = NUMERIC_POINTER(AS_NUMERIC(Current_intensity));
+#endif
/* Lets count how many probes we have */
diff --git a/src/read_bpmap.c b/src/read_bpmap.c
index e17a5e9..b48b07d 100644
--- a/src/read_bpmap.c
+++ b/src/read_bpmap.c
@@ -75,7 +75,7 @@ static SEXP ReadBPMAPHeader(FILE *infile){
char *Magicnumber = R_alloc(8,sizeof(char));
float version_number = 0.0;
- int version_number_int;
+
unsigned int unsigned_version_number_int;
diff --git a/src/read_cdf_xda.c b/src/read_cdf_xda.c
index a6b7e21..6d40121 100644
--- a/src/read_cdf_xda.c
+++ b/src/read_cdf_xda.c
@@ -1030,7 +1030,7 @@ SEXP ReadCDFFileIntoRList(SEXP filename,SEXP fullstructure){
- char buf[10];
+ char buf[11];
int i,j,k;
cdf_xda my_cdf;
diff --git a/src/read_cdffile2.c b/src/read_cdffile2.c
index 46d2f37..07abc32 100644
--- a/src/read_cdffile2.c
+++ b/src/read_cdffile2.c
@@ -1068,7 +1068,7 @@ SEXP ReadtextCDFFileIntoRList(SEXP filename){
SEXP UNITSProbeInfoNames;
SEXP UNITSProbeInforow_names;
- char buf[10]; /* temporary buffer for making names */
+ char buf[11]; /* temporary buffer for making names */
int i,j,k,l;
int tmpsum =0;
diff --git a/src/read_celfile_generic.c b/src/read_celfile_generic.c
index 55a565a..a039030 100644
--- a/src/read_celfile_generic.c
+++ b/src/read_celfile_generic.c
@@ -24,6 +24,7 @@
** Feb 13, 2008 - fix problems with generic_get_detailed_header_info(), gzgeneric_get_detailed_header_info()
** May 18, 2009 - Add Ability to extract scan date from CEL file header
** Sep 19, 2013 - Improve ability to deal with large 64bit matrices
+ ** Sept 4, 2017 - change gzFile * to gzFile
**
*************************************************************/
#include <R.h>
@@ -705,10 +706,7 @@ int check_generic_cel_file(const char *filename, const char *ref_cdfName, int re
int read_genericcel_file_intensities(const char *filename, double *intensity, size_t chip_num, size_t rows, size_t cols, size_t chip_dim_rows){
- size_t i=0, j=0;
- size_t cur_index;
-
- int fread_err=0;
+ size_t i=0;
FILE *infile;
@@ -755,10 +753,7 @@ int read_genericcel_file_intensities(const char *filename, double *intensity, si
int read_genericcel_file_stddev(const char *filename, double *intensity, size_t chip_num, size_t rows, size_t cols, size_t chip_dim_rows){
- size_t i=0, j=0;
- size_t cur_index;
-
- int fread_err=0;
+ size_t i=0;
FILE *infile;
@@ -809,10 +804,7 @@ int read_genericcel_file_stddev(const char *filename, double *intensity, size_t
int read_genericcel_file_npixels(const char *filename, double *intensity, size_t chip_num, size_t rows, size_t cols, size_t chip_dim_rows){
- size_t i=0, j=0;
- size_t cur_index;
-
- int fread_err=0;
+ size_t i=0;
FILE *infile;
@@ -871,10 +863,7 @@ void generic_get_masks_outliers(const char *filename, int *nmasks, short **masks
- int i=0, j=0;
- int cur_index;
-
- int fread_err=0;
+ int i=0;
FILE *infile;
@@ -960,13 +949,12 @@ void generic_get_masks_outliers(const char *filename, int *nmasks, short **masks
void generic_apply_masks(const char *filename, double *intensity, size_t chip_num, size_t rows, size_t cols, size_t chip_dim_rows, int rm_mask, int rm_outliers){
- size_t i=0, j=0;
+ size_t i=0;
size_t cur_index;
short cur_x, cur_y;
- int fread_err=0;
int nrows;
int size;
@@ -1060,7 +1048,7 @@ void generic_apply_masks(const char *filename, double *intensity, size_t chip_nu
int isgzGenericCelFile(const char *filename){
- gzFile *infile;
+ gzFile infile;
generic_file_header file_header;
generic_data_header data_header;
@@ -1099,7 +1087,7 @@ int isgzGenericCelFile(const char *filename){
char *gzgeneric_get_header_info(const char *filename, int *dim1, int *dim2){
- gzFile *infile;
+ gzFile infile;
generic_file_header file_header;
generic_data_header data_header;
@@ -1159,7 +1147,7 @@ char *gzgeneric_get_header_info(const char *filename, int *dim1, int *dim2){
void gzgeneric_get_detailed_header_info(const char *filename, detailed_header_info *header_info){
- gzFile *infile;
+ gzFile infile;
generic_file_header file_header;
generic_data_header data_header;
nvt_triplet *triplet;
@@ -1646,7 +1634,7 @@ int check_gzgeneric_cel_file(const char *filename, const char *ref_cdfName, int
int dim1, dim2;
- gzFile *infile;
+ gzFile infile;
generic_file_header file_header;
generic_data_header data_header;
@@ -1709,12 +1697,9 @@ int check_gzgeneric_cel_file(const char *filename, const char *ref_cdfName, int
int gzread_genericcel_file_intensities(const char *filename, double *intensity, size_t chip_num, size_t rows, size_t cols, size_t chip_dim_rows){
- size_t i=0, j=0;
- size_t cur_index;
-
- int fread_err=0;
+ size_t i=0;
- gzFile *infile;
+ gzFile infile;
generic_file_header my_header;
generic_data_header my_data_header;
@@ -1760,12 +1745,9 @@ int gzread_genericcel_file_intensities(const char *filename, double *intensity,
int gzread_genericcel_file_stddev(const char *filename, double *intensity, size_t chip_num, size_t rows, size_t cols, size_t chip_dim_rows){
- size_t i=0, j=0;
- size_t cur_index;
-
- int fread_err=0;
+ size_t i=0;
- gzFile *infile;
+ gzFile infile;
generic_file_header my_header;
generic_data_header my_data_header;
@@ -1814,12 +1796,9 @@ int gzread_genericcel_file_stddev(const char *filename, double *intensity, size_
int gzread_genericcel_file_npixels(const char *filename, double *intensity, size_t chip_num, size_t rows, size_t cols, size_t chip_dim_rows){
- size_t i=0, j=0;
- size_t cur_index;
-
- int fread_err=0;
+ size_t i=0;
- gzFile *infile;
+ gzFile infile;
generic_file_header my_header;
generic_data_header my_data_header;
@@ -1879,12 +1858,9 @@ void gzgeneric_get_masks_outliers(const char *filename, int *nmasks, short **mas
- int i=0, j=0;
- int cur_index;
-
- int fread_err=0;
+ int i=0;
- gzFile *infile;
+ gzFile infile;
generic_file_header my_header;
generic_data_header my_data_header;
@@ -1968,17 +1944,16 @@ void gzgeneric_get_masks_outliers(const char *filename, int *nmasks, short **mas
void gzgeneric_apply_masks(const char *filename, double *intensity, size_t chip_num, size_t rows, size_t cols, size_t chip_dim_rows, int rm_mask, int rm_outliers){
- size_t i=0, j=0;
+ size_t i=0;
size_t cur_index;
short cur_x, cur_y;
- int fread_err=0;
int nrows;
int size;
- gzFile *infile;
+ gzFile infile;
generic_file_header my_header;
generic_data_header my_data_header;
diff --git a/src/read_clf.c b/src/read_clf.c
index 99fc1eb..4776853 100644
--- a/src/read_clf.c
+++ b/src/read_clf.c
@@ -554,7 +554,7 @@ void read_clf_header(FILE *cur_file, char *buffer, clf_headers *header){
tokenset *cur_tokenset;
- int i;
+
char *temp_str;
diff --git a/src/read_generic.c b/src/read_generic.c
index d94d3d5..4505828 100644
--- a/src/read_generic.c
+++ b/src/read_generic.c
@@ -27,6 +27,7 @@
** Jan 15, 2008 - Fix VECTOR_ELT/STRING_ELT issues
** Feb, 2011 - Some debugging code for checking Generic file format parsing
** Nov, 2011 - Some additional fixed to deal with fixed width fields for strings in dataset rows
+ ** Sept 4, 2017 - change gzFile * to gzFile
**
*************************************************************/
@@ -903,7 +904,7 @@ int read_generic_data_set_rows(generic_data_set *data_set, FILE *instream){
-static int gzread_ASTRING(ASTRING *destination, gzFile *instream){
+static int gzread_ASTRING(ASTRING *destination, gzFile instream){
gzread_be_int32(&(destination->len),1,instream);
if (destination->len > 0){
@@ -917,7 +918,7 @@ static int gzread_ASTRING(ASTRING *destination, gzFile *instream){
-static int gzread_ASTRING_fw(ASTRING *destination, gzFile *instream, int length){
+static int gzread_ASTRING_fw(ASTRING *destination, gzFile instream, int length){
gzread_be_int32(&(destination->len),1,instream);
if (destination->len > 0){
@@ -933,7 +934,7 @@ static int gzread_ASTRING_fw(ASTRING *destination, gzFile *instream, int length)
}
-static int gzread_AWSTRING(AWSTRING *destination, gzFile *instream){
+static int gzread_AWSTRING(AWSTRING *destination, gzFile instream){
uint16_t temp; /* Affy file wchar_t are 16 bits, the platform may have 32 bit wchar_t (notatbly linux) */
@@ -955,7 +956,7 @@ static int gzread_AWSTRING(AWSTRING *destination, gzFile *instream){
}
-static int gzread_AWSTRING_fw(AWSTRING *destination, gzFile *instream, int length){
+static int gzread_AWSTRING_fw(AWSTRING *destination, gzFile instream, int length){
uint16_t temp; /* Affy file wchar_t are 16 bits, the platform may have 32 bit wchar_t (notatbly linux) */
@@ -981,7 +982,7 @@ static int gzread_AWSTRING_fw(AWSTRING *destination, gzFile *instream, int lengt
}
-static int gzread_nvt_triplet(nvt_triplet *destination, gzFile *instream){
+static int gzread_nvt_triplet(nvt_triplet *destination, gzFile instream){
if (!(gzread_AWSTRING(&(destination->name),instream)) ||
!(gzread_ASTRING(&(destination->value),instream)) ||
@@ -993,7 +994,7 @@ static int gzread_nvt_triplet(nvt_triplet *destination, gzFile *instream){
-static int gzread_nvts_triplet(col_nvts_triplet *destination, gzFile *instream){
+static int gzread_nvts_triplet(col_nvts_triplet *destination, gzFile instream){
if (!(gzread_AWSTRING(&(destination->name),instream)) ||
!(gzread_be_uchar(&(destination->type), 1, instream)) ||
@@ -1004,7 +1005,7 @@ static int gzread_nvts_triplet(col_nvts_triplet *destination, gzFile *instream){
}
-int gzread_generic_file_header(generic_file_header* file_header, gzFile *instream){
+int gzread_generic_file_header(generic_file_header* file_header, gzFile instream){
if (!gzread_be_uchar(&(file_header->magic_number),1,instream)){
return 0;
@@ -1032,7 +1033,7 @@ int gzread_generic_file_header(generic_file_header* file_header, gzFile *instrea
-int gzread_generic_data_header(generic_data_header *data_header, gzFile *instream){
+int gzread_generic_data_header(generic_data_header *data_header, gzFile instream){
int i;
@@ -1074,7 +1075,7 @@ int gzread_generic_data_header(generic_data_header *data_header, gzFile *instrea
-int gzread_generic_data_group(generic_data_group *data_group, gzFile *instream){
+int gzread_generic_data_group(generic_data_group *data_group, gzFile instream){
if (!gzread_be_uint32(&(data_group->file_position_nextgroup),1,instream) ||
!gzread_be_uint32(&(data_group->file_position_first_data),1,instream) ||
@@ -1090,7 +1091,7 @@ int gzread_generic_data_group(generic_data_group *data_group, gzFile *instream){
-int gzread_generic_data_set(generic_data_set *data_set, gzFile *instream){
+int gzread_generic_data_set(generic_data_set *data_set, gzFile instream){
int i;
@@ -1159,7 +1160,7 @@ int gzread_generic_data_set(generic_data_set *data_set, gzFile *instream){
-int gzread_generic_data_set_rows(generic_data_set *data_set, gzFile *instream){
+int gzread_generic_data_set_rows(generic_data_set *data_set, gzFile instream){
int i,j;
@@ -1493,7 +1494,7 @@ SEXP gzRead_Generic(SEXP filename){
SEXP return_value = R_NilValue;
- gzFile *infile;
+ gzFile infile;
generic_file_header my_header;
generic_data_header my_data_header;
diff --git a/src/read_generic.h b/src/read_generic.h
index 25f6752..04b0ff5 100644
--- a/src/read_generic.h
+++ b/src/read_generic.h
@@ -134,8 +134,8 @@ void Free_generic_data_group(generic_data_group *data_group);
void Free_generic_data_set(generic_data_set *data_set);
-int gzread_generic_file_header(generic_file_header* file_header, gzFile *instream);
-int gzread_generic_data_header(generic_data_header *data_header, gzFile *instream);
-int gzread_generic_data_group(generic_data_group *data_group,gzFile *instream);
-int gzread_generic_data_set(generic_data_set *data_set, gzFile *instream);
-int gzread_generic_data_set_rows(generic_data_set *data_set, gzFile *instream);
+int gzread_generic_file_header(generic_file_header* file_header, gzFile instream);
+int gzread_generic_data_header(generic_data_header *data_header, gzFile instream);
+int gzread_generic_data_group(generic_data_group *data_group,gzFile instream);
+int gzread_generic_data_set(generic_data_set *data_set, gzFile instream);
+int gzread_generic_data_set_rows(generic_data_set *data_set, gzFile instream);
diff --git a/src/read_multichannel_celfile_generic.c b/src/read_multichannel_celfile_generic.c
index dd2c7c6..7e92264 100644
--- a/src/read_multichannel_celfile_generic.c
+++ b/src/read_multichannel_celfile_generic.c
@@ -24,6 +24,7 @@
** Feb 13, 2008 - fix problems with generic_get_detailed_header_info(), gzgeneric_get_detailed_header_info()
** May 18, 2009 - Add Ability to extract scan date from CEL file header
** May 25, 2010 - Multichannel CELfile support adapted from single channel parser
+ ** Sep 4, 2017 - change gzFile* to gzFile
**
*************************************************************/
#include <R.h>
@@ -102,11 +103,9 @@ static int compare_AWSTRING_Intensity(AWSTRING string){
int multichannel_determine_number_channels(const char *filename){
- int i=0, j=0, k=0;
- int cur_index;
+ int j=0;
int returnvalue = 0;
- int fread_err=0;
FILE *infile;
@@ -158,21 +157,16 @@ int multichannel_determine_number_channels(const char *filename){
char *multichannel_determine_channel_name(const char *filename, int channelindex){
- int i=0, j=0, k=0;
- int cur_index;
+ int k=0;
char *returnvalue = 0;
- int fread_err=0;
-
FILE *infile;
generic_file_header my_header;
generic_data_header my_data_header;
generic_data_group my_data_group;
- generic_data_set my_data_set;
-
- uint32_t next_group =1;
+ uint32_t next_group =1;
if ((infile = fopen(filename, "rb")) == NULL)
@@ -217,10 +211,7 @@ char *multichannel_determine_channel_name(const char *filename, int channelindex
int read_genericcel_file_intensities_multichannel(const char *filename, double *intensity, int chip_num, int rows, int cols,int chip_dim_rows, int channelindex){
- int i=0, j=0, k=0;
- int cur_index;
-
- int fread_err=0;
+ int i=0, k=0;
FILE *infile;
@@ -274,11 +265,8 @@ int read_genericcel_file_intensities_multichannel(const char *filename, double *
int read_genericcel_file_stddev_multichannel(const char *filename, double *intensity, int chip_num, int rows, int cols,int chip_dim_rows, int channelindex){
- int i=0, j=0, k=0;
- int cur_index;
-
- int fread_err=0;
-
+ int i=0, k=0;
+
FILE *infile;
generic_file_header my_header;
@@ -338,10 +326,7 @@ int read_genericcel_file_stddev_multichannel(const char *filename, double *inten
int read_genericcel_file_npixels_multichannel(const char *filename, double *intensity, int chip_num, int rows, int cols,int chip_dim_rows, int channelindex){
- int i=0, j=0, k=0;
- int cur_index;
-
- int fread_err=0;
+ int i=0, k=0;
FILE *infile;
@@ -409,14 +394,8 @@ int read_genericcel_file_npixels_multichannel(const char *filename, double *inte
void generic_get_masks_outliers_multichannel(const char *filename, int *nmasks, short **masks_x, short **masks_y, int *noutliers, short **outliers_x, short **outliers_y, int channelindex){
-
-
-
- int i=0, j=0, k=0;
- int cur_index;
-
- int fread_err=0;
-
+ int i=0, k=0;
+
FILE *infile;
generic_file_header my_header;
@@ -513,13 +492,12 @@ void generic_get_masks_outliers_multichannel(const char *filename, int *nmasks,
void generic_apply_masks_multichannel(const char *filename, double *intensity, int chip_num, int rows, int cols,int chip_dim_rows, int rm_mask, int rm_outliers, int channelindex){
- int i=0, j=0;
+ int i=0;
int cur_index;
short cur_x, cur_y;
- int fread_err=0;
int nrows;
int size;
@@ -613,7 +591,7 @@ void generic_apply_masks_multichannel(const char *filename, double *intensity, i
int isgzGenericMultiChannelCelFile(const char *filename){
- gzFile *infile;
+ gzFile infile;
generic_file_header file_header;
generic_data_header data_header;
@@ -657,13 +635,11 @@ int isgzGenericMultiChannelCelFile(const char *filename){
int gzmultichannel_determine_number_channels(const char *filename){
- int i=0, j=0, k=0;
- int cur_index;
+ int j=0;
+
int returnvalue = 0;
-
- int fread_err=0;
-
- gzFile *infile;
+
+ gzFile infile;
generic_file_header my_header;
generic_data_header my_data_header;
@@ -710,20 +686,16 @@ int gzmultichannel_determine_number_channels(const char *filename){
char *gzmultichannel_determine_channel_name(const char *filename, int channelindex){
- int i=0, j=0, k=0;
- int cur_index;
+ int k=0;
+
char *returnvalue = 0;
- int fread_err=0;
-
- gzFile *infile;
+ gzFile infile;
generic_file_header my_header;
generic_data_header my_data_header;
generic_data_group my_data_group;
- generic_data_set my_data_set;
-
uint32_t next_group =1;
if ((infile = gzopen(filename, "rb")) == NULL)
@@ -760,12 +732,9 @@ char *gzmultichannel_determine_channel_name(const char *filename, int channelind
int gzread_genericcel_file_intensities_multichannel(const char *filename, double *intensity, int chip_num, int rows, int cols,int chip_dim_rows, int channelindex){
- int i=0, j=0, k=0;
- int cur_index;
-
- int fread_err=0;
-
- gzFile *infile;
+ int i=0, k=0;
+
+ gzFile infile;
generic_file_header my_header;
generic_data_header my_data_header;
@@ -816,12 +785,9 @@ int gzread_genericcel_file_intensities_multichannel(const char *filename, double
int gzread_genericcel_file_stddev_multichannel(const char *filename, double *intensity, int chip_num, int rows, int cols,int chip_dim_rows, int channelindex){
- int i=0, j=0, k=0;
- int cur_index;
-
- int fread_err=0;
-
- gzFile *infile;
+ int i=0, k=0;
+
+ gzFile infile;
generic_file_header my_header;
generic_data_header my_data_header;
@@ -878,12 +844,9 @@ int gzread_genericcel_file_stddev_multichannel(const char *filename, double *int
int gzread_genericcel_file_npixels_multichannel(const char *filename, double *intensity, int chip_num, int rows, int cols,int chip_dim_rows, int channelindex){
- int i=0, j=0, k=0;
- int cur_index;
-
- int fread_err=0;
+ int i=0, k=0;
- gzFile *infile;
+ gzFile infile;
generic_file_header my_header;
generic_data_header my_data_header;
@@ -945,14 +908,9 @@ int gzread_genericcel_file_npixels_multichannel(const char *filename, double *in
void gzgeneric_get_masks_outliers_multichannel(const char *filename, int *nmasks, short **masks_x, short **masks_y, int *noutliers, short **outliers_x, short **outliers_y, int channelindex){
-
-
- int i=0, j=0, k=0;
- int cur_index;
-
- int fread_err=0;
-
- gzFile *infile;
+ int i=0, k=0;
+
+ gzFile infile;
generic_file_header my_header;
generic_data_header my_data_header;
@@ -1046,17 +1004,15 @@ void gzgeneric_get_masks_outliers_multichannel(const char *filename, int *nmasks
void gzgeneric_apply_masks_multichannel(const char *filename, double *intensity, int chip_num, int rows, int cols,int chip_dim_rows, int rm_mask, int rm_outliers, int channelindex){
- int i=0, j=0;
+ int i=0;
int cur_index;
short cur_x, cur_y;
-
- int fread_err=0;
int nrows;
int size;
- gzFile *infile;
+ gzFile infile;
generic_file_header my_header;
generic_data_header my_data_header;
diff --git a/src/read_pgf.c b/src/read_pgf.c
index 5df93f0..114afa7 100644
--- a/src/read_pgf.c
+++ b/src/read_pgf.c
@@ -898,7 +898,7 @@ void read_pgf_header(FILE *cur_file, char *buffer, pgf_headers *header){
tokenset *cur_tokenset;
- int i;
+
char *temp_str;
@@ -1164,7 +1164,7 @@ void insert_level0(char *buffer, probeset_list_header *probeset_list, header_0 *
char *temp_str;
tokenset *cur_tokenset;
- probeset_list_node *temp_ptr;
+
probeset_list_node *temp_node = Calloc(1,probeset_list_node);
--
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