[med-svn] [r-bioc-ebimage] branch master updated (d0187f3 -> 9c5337e)
Andreas Tille
tille at debian.org
Wed Nov 8 13:07:53 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch master
in repository r-bioc-ebimage.
from d0187f3 Moved packaging from SVN to Git
new bac2871 Fix Watch file
new 5e372be New upstream version 4.20.0
new 8952c01 Update upstream source from tag 'upstream/4.20.0'
new 9c5337e Update packaging - problem to distribute r-cran-locfit remains
The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
CHANGES | 467 +++++++++++++++
DESCRIPTION | 20 +
NAMESPACE | 101 ++++
R/AllGenerics.R | 26 +
R/Image.R | 814 ++++++++++++++++++++++++++
R/abind.R | 55 ++
R/clahe.R | 4 +
R/colormap.R | 19 +
R/computeFeatures.R | 362 ++++++++++++
R/display.R | 275 +++++++++
R/drawCircle.R | 28 +
R/equalize.R | 42 ++
R/filter2.R | 125 ++++
R/floodFill.R | 67 +++
R/gblur.R | 3 +
R/localCurvature.R | 25 +
R/medianFilter.R | 9 +
R/morphology.R | 121 ++++
R/normalize.R | 30 +
R/objects.R | 82 +++
R/otsu.R | 30 +
R/segment.R | 78 +++
R/spatial.R | 122 ++++
R/tile.R | 36 ++
R/tools.R | 47 ++
README.md | 23 +
build/vignette.rds | Bin 0 -> 246 bytes
debian/changelog | 9 +-
debian/compat | 2 +-
debian/control | 12 +-
debian/watch | 5 +-
inst/CITATION | 23 +
inst/NEWS.Rd | 348 ++++++++++++
inst/doc/EBImage-introduction.R | 348 ++++++++++++
inst/doc/EBImage-introduction.Rmd | 729 ++++++++++++++++++++++++
inst/doc/EBImage-introduction.html | 782 +++++++++++++++++++++++++
inst/htmlwidgets/displayWidget.js | 23 +
inst/htmlwidgets/displayWidget.yaml | 6 +
inst/htmlwidgets/lib/viewer/display.css | 106 ++++
inst/htmlwidgets/lib/viewer/viewer.js | 611 ++++++++++++++++++++
inst/images/cells.tif | Bin 0 -> 546751 bytes
inst/images/nuclei.tif | Bin 0 -> 472093 bytes
inst/images/sample-color.png | Bin 0 -> 556865 bytes
inst/images/sample.png | Bin 0 -> 187719 bytes
inst/images/shapes.png | Bin 0 -> 3302 bytes
inst/scripts/figDistanceMapDemo.R | 27 +
inst/scripts/readWriteTest.R | 49 ++
inst/scripts/readWriteTest.Rout.save | 114 ++++
inst/viewer/display.css | 97 ++++
inst/viewer/display.template | 10 +
inst/viewer/viewer.js | 569 +++++++++++++++++++
man/EBImage-defunct.Rd | 63 ++
man/EBImage.Rd | 144 +++++
man/Image.Rd | 153 +++++
man/abind.Rd | 62 ++
man/bwlabel.Rd | 67 +++
man/channel.Rd | 85 +++
man/clahe.Rd | 72 +++
man/colorLabels.Rd | 42 ++
man/colormap.Rd | 53 ++
man/combine.Rd | 62 ++
man/computeFeatures.Rd | 159 ++++++
man/display-shiny.Rd | 85 +++
man/display.Rd | 93 +++
man/distmap.Rd | 49 ++
man/drawCircle.Rd | 49 ++
man/equalize.Rd | 56 ++
man/fillHull.Rd | 46 ++
man/filter2.Rd | 75 +++
man/floodFill.Rd | 72 +++
man/gblur.Rd | 49 ++
man/io.Rd | 81 +++
man/localCurvature.Rd | 70 +++
man/medianFilter.Rd | 64 +++
man/morphology.Rd | 112 ++++
man/normalize.Rd | 58 ++
man/ocontour.Rd | 37 ++
man/otsu.Rd | 57 ++
man/paintObjects.Rd | 72 +++
man/propagate.Rd | 123 ++++
man/rmObjects.Rd | 78 +++
man/spatial.Rd | 102 ++++
man/stackObjects.Rd | 91 +++
man/thresh.Rd | 56 ++
man/tile.Rd | 67 +++
man/transpose.Rd | 49 ++
man/watershed.Rd | 68 +++
src/EBImage.c | 72 +++
src/clahe.c | 391 +++++++++++++
src/clahe.h | 30 +
src/distmap.cpp | 146 +++++
src/distmap.h | 17 +
src/drawCircle.c | 87 +++
src/drawCircle.h | 18 +
src/floodFill.cpp | 396 +++++++++++++
src/floodFill.h | 19 +
src/getFrames.c | 107 ++++
src/getFrames.h | 18 +
src/haralick.c | 259 +++++++++
src/haralick.h | 18 +
src/medianFilter.c | 506 +++++++++++++++++
src/medianFilter.h | 17 +
src/morphology.cpp | 383 +++++++++++++
src/morphology.h | 17 +
src/nativeRaster.c | 72 +++
src/nativeRaster.h | 17 +
src/normalize.c | 100 ++++
src/normalize.h | 17 +
src/objects.c | 296 ++++++++++
src/objects.h | 19 +
src/ocontour.c | 92 +++
src/ocontour.h | 17 +
src/propagate.cpp | 216 +++++++
src/propagate.h | 17 +
src/spatial.c | 123 ++++
src/spatial.h | 17 +
src/thresh.cpp | 127 +++++
src/thresh.h | 17 +
src/tile.cpp | 229 ++++++++
src/tile.h | 18 +
src/tools.c | 85 +++
src/tools.h | 46 ++
src/transpose.cpp | 99 ++++
src/transpose.h | 17 +
src/watershed.cpp | 209 +++++++
src/watershed.h | 17 +
tests/test.R | 259 +++++++++
tests/test.Rout.save | 977 ++++++++++++++++++++++++++++++++
vignettes/EBImage-introduction.Rmd | 729 ++++++++++++++++++++++++
vignettes/logo.png | Bin 0 -> 15851 bytes
130 files changed, 15919 insertions(+), 16 deletions(-)
create mode 100644 CHANGES
create mode 100644 DESCRIPTION
create mode 100644 NAMESPACE
create mode 100644 R/AllGenerics.R
create mode 100644 R/Image.R
create mode 100644 R/abind.R
create mode 100644 R/clahe.R
create mode 100644 R/colormap.R
create mode 100644 R/computeFeatures.R
create mode 100644 R/display.R
create mode 100644 R/drawCircle.R
create mode 100644 R/equalize.R
create mode 100644 R/filter2.R
create mode 100644 R/floodFill.R
create mode 100644 R/gblur.R
create mode 100644 R/localCurvature.R
create mode 100644 R/medianFilter.R
create mode 100644 R/morphology.R
create mode 100755 R/normalize.R
create mode 100644 R/objects.R
create mode 100644 R/otsu.R
create mode 100644 R/segment.R
create mode 100644 R/spatial.R
create mode 100644 R/tile.R
create mode 100644 R/tools.R
create mode 100644 README.md
create mode 100644 build/vignette.rds
create mode 100644 inst/CITATION
create mode 100644 inst/NEWS.Rd
create mode 100644 inst/doc/EBImage-introduction.R
create mode 100644 inst/doc/EBImage-introduction.Rmd
create mode 100644 inst/doc/EBImage-introduction.html
create mode 100644 inst/htmlwidgets/displayWidget.js
create mode 100644 inst/htmlwidgets/displayWidget.yaml
create mode 100755 inst/htmlwidgets/lib/viewer/display.css
create mode 100644 inst/htmlwidgets/lib/viewer/viewer.js
create mode 100644 inst/images/cells.tif
create mode 100644 inst/images/nuclei.tif
create mode 100644 inst/images/sample-color.png
create mode 100644 inst/images/sample.png
create mode 100644 inst/images/shapes.png
create mode 100644 inst/scripts/figDistanceMapDemo.R
create mode 100644 inst/scripts/readWriteTest.R
create mode 100644 inst/scripts/readWriteTest.Rout.save
create mode 100755 inst/viewer/display.css
create mode 100644 inst/viewer/display.template
create mode 100644 inst/viewer/viewer.js
create mode 100644 man/EBImage-defunct.Rd
create mode 100644 man/EBImage.Rd
create mode 100644 man/Image.Rd
create mode 100644 man/abind.Rd
create mode 100644 man/bwlabel.Rd
create mode 100644 man/channel.Rd
create mode 100644 man/clahe.Rd
create mode 100644 man/colorLabels.Rd
create mode 100644 man/colormap.Rd
create mode 100644 man/combine.Rd
create mode 100644 man/computeFeatures.Rd
create mode 100644 man/display-shiny.Rd
create mode 100644 man/display.Rd
create mode 100644 man/distmap.Rd
create mode 100644 man/drawCircle.Rd
create mode 100644 man/equalize.Rd
create mode 100644 man/fillHull.Rd
create mode 100644 man/filter2.Rd
create mode 100644 man/floodFill.Rd
create mode 100644 man/gblur.Rd
create mode 100644 man/io.Rd
create mode 100644 man/localCurvature.Rd
create mode 100644 man/medianFilter.Rd
create mode 100644 man/morphology.Rd
create mode 100644 man/normalize.Rd
create mode 100644 man/ocontour.Rd
create mode 100644 man/otsu.Rd
create mode 100644 man/paintObjects.Rd
create mode 100644 man/propagate.Rd
create mode 100644 man/rmObjects.Rd
create mode 100644 man/spatial.Rd
create mode 100644 man/stackObjects.Rd
create mode 100644 man/thresh.Rd
create mode 100644 man/tile.Rd
create mode 100644 man/transpose.Rd
create mode 100644 man/watershed.Rd
create mode 100644 src/EBImage.c
create mode 100644 src/clahe.c
create mode 100644 src/clahe.h
create mode 100644 src/distmap.cpp
create mode 100644 src/distmap.h
create mode 100644 src/drawCircle.c
create mode 100644 src/drawCircle.h
create mode 100644 src/floodFill.cpp
create mode 100644 src/floodFill.h
create mode 100644 src/getFrames.c
create mode 100644 src/getFrames.h
create mode 100644 src/haralick.c
create mode 100644 src/haralick.h
create mode 100644 src/medianFilter.c
create mode 100644 src/medianFilter.h
create mode 100644 src/morphology.cpp
create mode 100644 src/morphology.h
create mode 100644 src/nativeRaster.c
create mode 100644 src/nativeRaster.h
create mode 100644 src/normalize.c
create mode 100644 src/normalize.h
create mode 100644 src/objects.c
create mode 100644 src/objects.h
create mode 100644 src/ocontour.c
create mode 100644 src/ocontour.h
create mode 100644 src/propagate.cpp
create mode 100644 src/propagate.h
create mode 100644 src/spatial.c
create mode 100644 src/spatial.h
create mode 100644 src/thresh.cpp
create mode 100644 src/thresh.h
create mode 100644 src/tile.cpp
create mode 100644 src/tile.h
create mode 100644 src/tools.c
create mode 100644 src/tools.h
create mode 100644 src/transpose.cpp
create mode 100644 src/transpose.h
create mode 100644 src/watershed.cpp
create mode 100644 src/watershed.h
create mode 100644 tests/test.R
create mode 100644 tests/test.Rout.save
create mode 100644 vignettes/EBImage-introduction.Rmd
create mode 100644 vignettes/logo.png
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