[med-svn] [r-bioc-ebimage] 03/04: Update upstream source from tag 'upstream/4.20.0'
Andreas Tille
tille at debian.org
Wed Nov 8 13:07:54 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository r-bioc-ebimage.
commit 8952c01d3f807603072d7652fdf01a5a29b07f1f
Merge: bac2871 5e372be
Author: Andreas Tille <tille at debian.org>
Date: Wed Nov 8 13:59:22 2017 +0100
Update upstream source from tag 'upstream/4.20.0'
Update to upstream version '4.20.0'
with Debian dir d3a74273dd416d5a558ab1df29c000bbe11b1474
CHANGES | 467 +++++++++++++++
DESCRIPTION | 20 +
NAMESPACE | 101 ++++
R/AllGenerics.R | 26 +
R/Image.R | 814 ++++++++++++++++++++++++++
R/abind.R | 55 ++
R/clahe.R | 4 +
R/colormap.R | 19 +
R/computeFeatures.R | 362 ++++++++++++
R/display.R | 275 +++++++++
R/drawCircle.R | 28 +
R/equalize.R | 42 ++
R/filter2.R | 125 ++++
R/floodFill.R | 67 +++
R/gblur.R | 3 +
R/localCurvature.R | 25 +
R/medianFilter.R | 9 +
R/morphology.R | 121 ++++
R/normalize.R | 30 +
R/objects.R | 82 +++
R/otsu.R | 30 +
R/segment.R | 78 +++
R/spatial.R | 122 ++++
R/tile.R | 36 ++
R/tools.R | 47 ++
README.md | 23 +
build/vignette.rds | Bin 0 -> 246 bytes
inst/CITATION | 23 +
inst/NEWS.Rd | 348 ++++++++++++
inst/doc/EBImage-introduction.R | 348 ++++++++++++
inst/doc/EBImage-introduction.Rmd | 729 ++++++++++++++++++++++++
inst/doc/EBImage-introduction.html | 782 +++++++++++++++++++++++++
inst/htmlwidgets/displayWidget.js | 23 +
inst/htmlwidgets/displayWidget.yaml | 6 +
inst/htmlwidgets/lib/viewer/display.css | 106 ++++
inst/htmlwidgets/lib/viewer/viewer.js | 611 ++++++++++++++++++++
inst/images/cells.tif | Bin 0 -> 546751 bytes
inst/images/nuclei.tif | Bin 0 -> 472093 bytes
inst/images/sample-color.png | Bin 0 -> 556865 bytes
inst/images/sample.png | Bin 0 -> 187719 bytes
inst/images/shapes.png | Bin 0 -> 3302 bytes
inst/scripts/figDistanceMapDemo.R | 27 +
inst/scripts/readWriteTest.R | 49 ++
inst/scripts/readWriteTest.Rout.save | 114 ++++
inst/viewer/display.css | 97 ++++
inst/viewer/display.template | 10 +
inst/viewer/viewer.js | 569 +++++++++++++++++++
man/EBImage-defunct.Rd | 63 ++
man/EBImage.Rd | 144 +++++
man/Image.Rd | 153 +++++
man/abind.Rd | 62 ++
man/bwlabel.Rd | 67 +++
man/channel.Rd | 85 +++
man/clahe.Rd | 72 +++
man/colorLabels.Rd | 42 ++
man/colormap.Rd | 53 ++
man/combine.Rd | 62 ++
man/computeFeatures.Rd | 159 ++++++
man/display-shiny.Rd | 85 +++
man/display.Rd | 93 +++
man/distmap.Rd | 49 ++
man/drawCircle.Rd | 49 ++
man/equalize.Rd | 56 ++
man/fillHull.Rd | 46 ++
man/filter2.Rd | 75 +++
man/floodFill.Rd | 72 +++
man/gblur.Rd | 49 ++
man/io.Rd | 81 +++
man/localCurvature.Rd | 70 +++
man/medianFilter.Rd | 64 +++
man/morphology.Rd | 112 ++++
man/normalize.Rd | 58 ++
man/ocontour.Rd | 37 ++
man/otsu.Rd | 57 ++
man/paintObjects.Rd | 72 +++
man/propagate.Rd | 123 ++++
man/rmObjects.Rd | 78 +++
man/spatial.Rd | 102 ++++
man/stackObjects.Rd | 91 +++
man/thresh.Rd | 56 ++
man/tile.Rd | 67 +++
man/transpose.Rd | 49 ++
man/watershed.Rd | 68 +++
src/EBImage.c | 72 +++
src/clahe.c | 391 +++++++++++++
src/clahe.h | 30 +
src/distmap.cpp | 146 +++++
src/distmap.h | 17 +
src/drawCircle.c | 87 +++
src/drawCircle.h | 18 +
src/floodFill.cpp | 396 +++++++++++++
src/floodFill.h | 19 +
src/getFrames.c | 107 ++++
src/getFrames.h | 18 +
src/haralick.c | 259 +++++++++
src/haralick.h | 18 +
src/medianFilter.c | 506 +++++++++++++++++
src/medianFilter.h | 17 +
src/morphology.cpp | 383 +++++++++++++
src/morphology.h | 17 +
src/nativeRaster.c | 72 +++
src/nativeRaster.h | 17 +
src/normalize.c | 100 ++++
src/normalize.h | 17 +
src/objects.c | 296 ++++++++++
src/objects.h | 19 +
src/ocontour.c | 92 +++
src/ocontour.h | 17 +
src/propagate.cpp | 216 +++++++
src/propagate.h | 17 +
src/spatial.c | 123 ++++
src/spatial.h | 17 +
src/thresh.cpp | 127 +++++
src/thresh.h | 17 +
src/tile.cpp | 229 ++++++++
src/tile.h | 18 +
src/tools.c | 85 +++
src/tools.h | 46 ++
src/transpose.cpp | 99 ++++
src/transpose.h | 17 +
src/watershed.cpp | 209 +++++++
src/watershed.h | 17 +
tests/test.R | 259 +++++++++
tests/test.Rout.save | 977 ++++++++++++++++++++++++++++++++
vignettes/EBImage-introduction.Rmd | 729 ++++++++++++++++++++++++
vignettes/logo.png | Bin 0 -> 15851 bytes
126 files changed, 15907 insertions(+)
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