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tille pushed a commit to branch master
in repository r-bioc-000-dependency-scheme.
commit e9c75bd0e75a229756f3580aac520345b6c4b1dd
Author: Andreas Tille <tille at debian.org>
Date: Wed Nov 8 16:41:28 2017 +0100
Add delayedarray to dependency tree
---
3.6/BioC_3.6-dependency-tree.ditaa | 96 ++++++++++++++++++++++++++++++++++++++
3.6/Makefile | 14 ++++++
2 files changed, 110 insertions(+)
diff --git a/3.6/BioC_3.6-dependency-tree.ditaa b/3.6/BioC_3.6-dependency-tree.ditaa
new file mode 100644
index 0000000..bc5f8b0
--- /dev/null
+++ b/3.6/BioC_3.6-dependency-tree.ditaa
@@ -0,0 +1,96 @@
+ +-------+ +------------+
+ | edger | | cummerbund |
+ +-------+ +------------+
+ ^ ^
+ | |
+ +---+---+ +------------+ +--------+ +---+--+
+ | limma | | hilbertvis | | qvalue | | gviz |
+ +-------+ +------------+ +--------+ +------+
+ ^ ^
+ : |
+ : +---------------+ +------+-----+
+ +------+------+ | ensembldb +---------------------->| biovizbase |
+ |cAAA go.db | +---------------+ +------+-----+
+ +-------------+ ^ ^
+ | |
+ +--------------+ +-------+-------+ +-+----------------+ +----------+--------+
+ | protgenerics +------------------------------>| annotationhub |<-----+ annotationfilter | | variantannotation |
+ +--------------+ +---------------+ +------------------+ +-------------------+
+ ^ ^ ^ | ^ ^
+ | | | | | |
+ +-------------------------------------------------------------+ | | | +------------+----+ +-+---------+
+ | | | | | genomicfeatures | | bsgenome |
+ +------------+-----------+ +--------------+ | | | +-----------------+ +-----------+
+ | interactivedisplaybase | | altcdfenvs | | | | ^ ^ ^
+ +------------------------+ +--------------+ | | | | | |
+ ^ ^ ^ ^ | | | | +--+-------+--+
+ | | | | | | | | | rtracklayer |
+ | +------------------------+ | | +-------------------------------+ +-------+ | | +-------------+
+ | | | | | | | | ^
+ | | +-----------++ | | | +-------------+ |
+ | | | makecdfenv | | | +-----------+ | | | +----------+--------+
+ | | +------------+ | | +-------------------->| shortread |<----------|---|-----------+ genomicalignments |
+ | | ^ | | | +-----------+ | | | +-------------------+
+ | | | | | | | | | ^ ^
+ | | | | | | | | | | |
+ | | | | | | | | | +-----------+--+ +--------+-------------+
+ | | | +---------------------+ +------------------------------------>| rsamtools | | summarizedexperiment |
+ | | | | | | | | | | +--------------+ +----------------------+
+ | | | | | | | | | +--+ ^ ^: ^ ^ ^ ^
+ | | | | | | | | | | | |: : | | |
+ | | | | | | | +=====|=======|======|==|=========|:======+ | | |
+ | | | | | | | : | | | | |: | | |
+ | | +-------+--+ | | +--+-----+---+ +--------+---+ | +-----+---+ | | |: | | +--+-----------+
+ | | | affy |<-----------+ | | biostrings | | annotate | | | biomart | | | |: | | | delayedarray |
+ | | +----------+ | | | +------------+ +------------+ | +---------+ | | |: | | +--------------+
+ | | ^ ^ ^ | | | ^ ^ | ^ | | |: | |
+ | | | | | | | | | | | | | | |: | |
+ | | +----------------+ | ++--------+ | | | | +--+-----+----+-+ +-----+--+------+ |: | |
+ | | | preprocesscore | | | affyio | | | | | | annotationdbi | | genomicranges +--|:-----------+ |
+ | | +----------------+ | +---------+ | | | | +---------------+ +---------------+ |: |
+ | | | | | | | ^ ^ ^ ^ |: |
+ | | | | | | | | | | | |: |
+ | | ++--------------+-+ | | +---------|-----------------+ | | | |: |
+ | | | biocinstaller | | | | | | | | |: |
+ | | +-----------------+ | | | | +----------------------|--------+ | |: |
+ | | | | | | | | | |: |
+ | | | | | +---+---+-+ +-+-----------++ |: |
+ | | | | | | xvector | | genomeinfodb | |: |
+ | | | | | +---------+ +--------------+ |: |
+ | | | | | ^ ^ |: |
+ | | | | | | | |: |
+ | ++-----------+ +----------+ | | | +---+-----+ | |: |
+ | | hypergraph | | multtest | | | | | iranges +-------------------------+ |: |
+ | +------------+ +----------+ | | | +-----+---+ |: |
+ | ^ ^ | | | ^ : |: |
+ | | | +-+--+--+-+ | : |: |
+ | | +--------------+ biobase +-------|-:--------------------------------------------------|:---------------+
+ | | +---------+ | v |v
+ | +---+---+ ^ +---+-------+ +----------+---+
+ | | graph |<-----------------------------+ | +----->| s4vectors | | biocparallel |
+ | +-------+ | | | +-----------+ +--------------+
+ | | | | ^
+ | | | | |
+ | | | | +---------------------------------------------------+
+ | | | | |
+ | +--+--+--+---+-+ +----------+
+ +------------------------------------------+ biocgenerics +------------------------------------------------------------------>| snpstats |
+ +--------------+ +----------+
+
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diff --git a/3.6/Makefile b/3.6/Makefile
new file mode 100644
index 0000000..95a24cb
--- /dev/null
+++ b/3.6/Makefile
@@ -0,0 +1,14 @@
+#!/usr/bin/make -f
+
+NAME:=BioC_3.6-dependency-tree
+
+all: png
+
+png: $(NAME).png
+
+%.png: %.ditaa
+ rm -f $@
+ ditaa $^
+
+clean:
+ rm -f $(NAME).png
--
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