[med-svn] [r-bioc-rtracklayer] 02/05: Update upstream source from tag 'upstream/1.38.0'

[Andreas Tille]

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tille pushed a commit to branch master
in repository r-bioc-rtracklayer.

commit c386cc08fa1ef83c7d9aafadba6b3415f97e48d8
Merge: 8039287 6942ae9
Author: Andreas Tille <tille at debian.org>
Date:   Thu Nov 9 09:06:07 2017 +0100

    Update upstream source from tag 'upstream/1.38.0'
    
    Update to upstream version '1.38.0'
    with Debian dir 30246d76312a188a5cc1b3588ca10c9ac6a2d985

 DESCRIPTION              |  15 ++++++++-------
 NAMESPACE                |   2 +-
 R/bed.R                  |   5 +++--
 R/bigWig.R               |  18 ++++++++++++++++--
 R/browser.R              |   4 ++--
 R/chain.R                |  20 ++++++++++++++++++--
 R/gff.R                  |   3 +--
 R/ucsc.R                 |   7 ++++++-
 R/wig.R                  |  14 ++++++++++++--
 inst/doc/rtracklayer.pdf | Bin 311311 -> 311498 bytes
 inst/tests/test.bedGraph |  18 +++++++++---------
 man/BEDFile-class.Rd     |   1 +
 man/BigWigFile.Rd        |  21 ++++++++++++++++++---
 man/GFFFile-class.Rd     |   1 -
 man/GenomicData.Rd       |   1 -
 man/TwoBitFile-class.Rd  |   2 +-
 man/browseGenome.Rd      |   6 +++---
 man/export.Rd            |   1 -
 src/Makevars             |   2 +-
 src/Makevars.in          |   2 +-
 src/bigWig.c             |   5 +++--
 src/chain_io.c           |  11 ++++++-----
 src/ucsc/bPlusTree.c     |   4 +---
 src/ucsc/bbiRead.c       |   7 +++----
 src/ucsc/dnautil.c       |  28 +++++++++++++---------------
 src/ucsc/net.c           |   4 ++--
 src/ucsc/udc.c           |  12 +++++-------
 src/utils.c              |   1 -
 28 files changed, 134 insertions(+), 81 deletions(-)

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