[med-svn] [r-bioc-rtracklayer] branch upstream updated (a0babb9 -> 6942ae9)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch upstream
in repository r-bioc-rtracklayer.

      from  a0babb9   New upstream version 1.36.6
       new  6942ae9   New upstream version 1.38.0

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 DESCRIPTION              |  15 ++++++++-------
 NAMESPACE                |   2 +-
 R/bed.R                  |   5 +++--
 R/bigWig.R               |  18 ++++++++++++++++--
 R/browser.R              |   4 ++--
 R/chain.R                |  20 ++++++++++++++++++--
 R/gff.R                  |   3 +--
 R/ucsc.R                 |   7 ++++++-
 R/wig.R                  |  14 ++++++++++++--
 inst/doc/rtracklayer.pdf | Bin 311311 -> 311498 bytes
 inst/tests/test.bedGraph |  18 +++++++++---------
 man/BEDFile-class.Rd     |   1 +
 man/BigWigFile.Rd        |  21 ++++++++++++++++++---
 man/GFFFile-class.Rd     |   1 -
 man/GenomicData.Rd       |   1 -
 man/TwoBitFile-class.Rd  |   2 +-
 man/browseGenome.Rd      |   6 +++---
 man/export.Rd            |   1 -
 src/Makevars             |   2 +-
 src/Makevars.in          |   2 +-
 src/bigWig.c             |   5 +++--
 src/chain_io.c           |  11 ++++++-----
 src/ucsc/bPlusTree.c     |   4 +---
 src/ucsc/bbiRead.c       |   7 +++----
 src/ucsc/dnautil.c       |  28 +++++++++++++---------------
 src/ucsc/net.c           |   4 ++--
 src/ucsc/udc.c           |  12 +++++-------
 src/utils.c              |   1 -
 28 files changed, 134 insertions(+), 81 deletions(-)

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