[med-svn] [r-bioc-variantannotation] branch master updated (5a4d594 -> 4d2b7b3)

[Andreas Tille]

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tille pushed a change to branch master
in repository r-bioc-variantannotation.

      from  5a4d594   Upload to unstable
       new  5b617f9   Secure URI in watch file
       new  1e3ba2e   New upstream version 1.24.1
       new  15849c3   Update upstream source from tag 'upstream/1.24.1'
       new  ff06c45   New upstream version
       new  4d2b7b3   Upload to unstable

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repository and will be described in separate emails.  The revisions
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Summary of changes:
 DESCRIPTION                      |   4 +--
 NAMESPACE                        |   2 +-
 NEWS                             |  29 ++++++++++++++++
 R/AllClasses.R                   |   4 +--
 R/methods-VCF-class.R            |  37 +++++++++++++--------
 R/methods-VCFHeader-class.R      |   6 ++--
 R/methods-VRangesList-class.R    |   3 ++
 R/methods-VcfFile.R              |   7 ++--
 R/methods-locateVariants.R       |   2 +-
 build/vignette.rds               | Bin 270 -> 271 bytes
 debian/changelog                 |   7 ++++
 debian/watch                     |   2 +-
 inst/doc/VariantAnnotation.pdf   | Bin 203450 -> 203854 bytes
 inst/doc/filterVcf.pdf           | Bin 176665 -> 176665 bytes
 inst/unitTests/test_VCF-class.R  |   2 +-
 man/VCF-class.Rd                 |  69 ++++++++++++++++++++++++---------------
 man/VRangesList-class.Rd         |  18 ++++++++++
 man/summarizeVariants-methods.Rd |   3 +-
 18 files changed, 139 insertions(+), 56 deletions(-)

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