[med-svn] [r-bioc-protgenerics] 03/06: New upstream version 1.10.0

[Andreas Tille]

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tille pushed a commit to branch master
in repository r-bioc-protgenerics.

commit 920e01e16e5ed3ec619ecb982b25a0798355626a
Author: Andreas Tille <tille at debian.org>
Date:   Thu Nov 9 10:06:56 2017 +0100

    New upstream version 1.10.0
---
 DESCRIPTION         | 4 ++--
 NAMESPACE           | 4 +++-
 NEWS                | 4 ++++
 R/protgenerics.R    | 3 +++
 man/protgenerics.Rd | 7 +++++--
 5 files changed, 17 insertions(+), 5 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 2c80643..634d907 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -2,7 +2,7 @@ Package: ProtGenerics
 Title: S4 generic functions for Bioconductor proteomics infrastructure
 Description: S4 generic functions needed by Bioconductor proteomics
         packages.
-Version: 1.8.0
+Version: 1.10.0
 Author: Laurent Gatto <lg390 at cam.ac.uk>
 Maintainer: Laurent Gatto <lg390 at cam.ac.uk>
 biocViews: Infrastructure, Proteomics, MassSpectrometry
@@ -10,4 +10,4 @@ URL: https://github.com/lgatto/ProtGenerics
 Depends: methods
 License: Artistic-2.0
 NeedsCompilation: no
-Packaged: 2017-04-25 00:08:05 UTC; biocbuild
+Packaged: 2017-10-31 00:15:23 UTC; biocbuild
diff --git a/NAMESPACE b/NAMESPACE
index 2d5be34..6d948a7 100644
--- a/NAMESPACE
+++ b/NAMESPACE
@@ -17,4 +17,6 @@ export(psms,
        ions,
        chromatograms,
        chromatogram,
-       isCentroided)
+       isCentroided,
+       writeMSData
+       )
diff --git a/NEWS b/NEWS
index 5e405a3..2bfbee6 100644
--- a/NEWS
+++ b/NEWS
@@ -1,3 +1,7 @@
+CHANGES IN VERSION 1.9.1
+------------------------
+ o add writeMSData <2017-09-20 Wed>
+
 CHANGES IN VERSION 1.5.1
 ------------------------
  o added isCentroided generic <2016-07-23 Sat>
diff --git a/R/protgenerics.R b/R/protgenerics.R
index 6e11659..3083ae7 100644
--- a/R/protgenerics.R
+++ b/R/protgenerics.R
@@ -22,3 +22,6 @@ setGeneric("chromatograms", function(object, ...) standardGeneric("chromatograms
 setGeneric("chromatogram", function(object, ...) standardGeneric("chromatogram"))
 setGeneric("mz<-", function(object, value) standardGeneric("mz<-"))
 setGeneric("isCentroided", function(object, ...) standardGeneric("isCentroided"))
+
+setGeneric("writeMSData", function(object, file, ...)
+    standardGeneric("writeMSData"))
diff --git a/man/protgenerics.Rd b/man/protgenerics.Rd
index b49fdf0..5afd510 100644
--- a/man/protgenerics.Rd
+++ b/man/protgenerics.Rd
@@ -21,7 +21,7 @@
 \alias{chromatograms}
 \alias{chromatogram}
 \alias{isCentroided}
-
+\alias{writeMSData}
 
 \title{
   S4 generic functions for Bioconductor proteomics infrastructure
@@ -106,11 +106,14 @@ ions(object, ...)
 chromatograms(object, ...)
 chromatogram(object, ...)
 isCentroided(object, ...)
+writeMSData(object, file, ...)
 }
 
 
 \arguments{
-  \item{object}{Object of class for which methods are defined. } 
+  \item{object}{Object of class for which methods are defined. }
+  \item{file}{for \code{writeMSData}}: the name of the file to which the
+  data should be exported.
   \item{\dots}{Further arguments, possibly used by downstream methods. }
 }
 

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