[med-svn] [r-bioc-annotationhub] branch upstream updated (fbb6aad -> dff0956)

[Andreas Tille]

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tille pushed a change to branch upstream
in repository r-bioc-annotationhub.

      from  fbb6aad   New upstream version 2.8.3
       new  dff0956   New upstream version 2.10.1

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 DESCRIPTION                             |  17 +-
 NAMESPACE                               |   4 +-
 NEWS                                    |  36 ++++
 R/AnnotationHub-class.R                 |  42 +---
 R/AnnotationHubResource-class.R         |  21 ++
 R/Hub-class.R                           |  49 ++++-
 R/cache-utils.R                         |   2 +-
 R/db-utils.R                            |   8 +-
 R/readMetadataFromCsv.R                 |  83 ++++++++
 R/sql-utils.R                           |   2 -
 R/utilities.R                           |  18 +-
 build/vignette.rds                      | Bin 287 -> 339 bytes
 inst/doc/AnnotationHub-HOWTO.R          |   4 +-
 inst/doc/AnnotationHub-HOWTO.Rmd        |   4 +-
 inst/doc/AnnotationHub-HOWTO.html       | 232 ++++++++++++++------
 inst/doc/AnnotationHub.R                |  42 ++--
 inst/doc/AnnotationHub.html             | 300 +++++++++++++++++---------
 inst/doc/CreateAnAnnotationPackage.R    |  25 +++
 inst/doc/CreateAnAnnotationPackage.Rmd  | 354 +++++++++++++++++++++++++++++++
 inst/doc/CreateAnAnnotationPackage.html | 364 ++++++++++++++++++++++++++++++++
 man/AnnotationHub-class.Rd              |  21 +-
 man/AnnotationHub-package.Rd            |  10 +-
 man/AnnotationHubResource-class.Rd      |  39 +---
 man/listResources.Rd                    |  54 +----
 man/readMetadataFromCsv.Rd              | 194 +++++++++++++++++
 vignettes/AnnotationHub-HOWTO.Rmd       |   4 +-
 vignettes/CreateAnAnnotationPackage.Rmd | 354 +++++++++++++++++++++++++++++++
 27 files changed, 1931 insertions(+), 352 deletions(-)
 create mode 100644 R/readMetadataFromCsv.R
 create mode 100644 inst/doc/CreateAnAnnotationPackage.R
 create mode 100644 inst/doc/CreateAnAnnotationPackage.Rmd
 create mode 100644 inst/doc/CreateAnAnnotationPackage.html
 create mode 100644 man/readMetadataFromCsv.Rd
 create mode 100644 vignettes/CreateAnAnnotationPackage.Rmd

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