[med-svn] [r-bioc-cummerbund] branch upstream updated (fe788b9 -> fe578f8)

[Andreas Tille]

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tille pushed a change to branch upstream
in repository r-bioc-cummerbund.

      from  fe788b9   New upstream version 2.18.0
       new  fe578f8   New upstream version 2.20.0

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 DESCRIPTION                              |   4 +-
 NAMESPACE                                |   4 +-
 R/database-setup.R                       |  15 +++++--
 R/methods-CuffData.R                     |   3 +-
 R/methods-CuffFeatureSet.R               |   1 +
 R/methods-CuffGene.R                     |   2 +-
 README                                   |   5 ++-
 build/vignette.rds                       | Bin 302 -> 303 bytes
 inst/doc/cummeRbund-example-workflow.pdf | Bin 170482 -> 170482 bytes
 inst/doc/cummeRbund-manual.R             |  72 +++++++++++++++----------------
 inst/doc/cummeRbund-manual.Rnw           |   2 +-
 inst/doc/cummeRbund-manual.pdf           | Bin 1370034 -> 1357444 bytes
 vignettes/cummeRbund-manual.Rnw          |   2 +-
 13 files changed, 62 insertions(+), 48 deletions(-)

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