[med-svn] [r-bioc-pasillabamsubset] 01/04: The only reason for this package is to run the testsuite for r-bioc-rsamtools. Currently it is not intended to upload the package to the Debian mirror.

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository r-bioc-pasillabamsubset.

commit 2c3a35598ecb48ad6b8a8aafc60d300e1be8546c
Author: Andreas Tille <tille at debian.org>
Date:   Tue Dec 3 13:16:13 2013 +0000

    The only reason for this package is to run the testsuite for r-bioc-rsamtools.  Currently it is not intended to upload the package to the Debian mirror.
---
 debian/README.Debian |  7 +++++++
 debian/changelog     |  6 ++++++
 debian/compat        |  1 +
 debian/control       | 28 ++++++++++++++++++++++++++++
 debian/copyright     | 17 +++++++++++++++++
 debian/rules         |  4 ++++
 debian/source/format |  1 +
 debian/watch         |  3 +++
 8 files changed, 67 insertions(+)

diff --git a/debian/README.Debian b/debian/README.Debian
new file mode 100644
index 0000000..c17ad13
--- /dev/null
+++ b/debian/README.Debian
@@ -0,0 +1,7 @@
+pasillaBamSubset for Debian
+---------------------------
+
+The only reason for this package is to run the testsuite for
+r-bioc-rsamtools.  Currently it is not intended to upload the
+package to the Debian mirror.
+
diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..8791900
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,6 @@
+r-bioc-pasillabamsubset (0.0.8-1) UNRELEASED; urgency=low
+
+  * Initial release (closes: #???)
+    Currently no attempt to release (see README.Debian)
+
+ -- Andreas Tille <tille at debian.org>  Tue, 03 Dec 2013 13:56:27 +0100
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..cac9393
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,28 @@
+Source: r-bioc-pasillabamsubset
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: gnu-r
+Priority: optional
+Build-Depends: debhelper (>= 9),
+               cdbs,
+               r-base-dev
+Standards-Version: 3.9.5
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-pasillabamsubset/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-pasillabamsubset/trunk/
+Homepage: http://bioconductor.org/packages/release/data/experiment/html/pasillaBamSubset.html
+
+Package: r-bioc-pasillabamsubset
+Architecture: any
+Depends: ${R:Depends},
+         ${misc:Depends},
+         ${shlibs:Depends}
+Description: Subset of BAM files from "Pasilla" experiment
+ Subset of BAM files untreated1.bam (single-end reads) and
+ untreated3.bam (paired-end reads) from "Pasilla" experiment (Pasilla
+ knock-down by Brooks et al., Genome Research 2011). See the vignette in
+ the pasilla data package for how BAM files untreated1.bam and
+ untreated3.bam were obtained from the RNA-Seq read sequence data that is
+ provided by NCBI Gene Expression Omnibus under accession numbers
+ GSM461176 to GSM461181. Also contains the DNA sequence for fly
+ chromosome 4 to which the reads can be mapped.
+
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..5fd314e
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,17 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: pasillaBamSubset
+Upstream-Contact: H. Pages <hpages at fhcrc.org>
+Source: http://bioconductor.org/packages/release/data/experiment/html/pasillaBamSubset.html
+
+Files: *
+Copyright: © 2006-2013 H. Pages and P. Aboyoun
+License: LGPL-2.1+
+
+Files: debian/*
+Copyright: 2013 Andreas Tille <tille at debian.org>
+License: LGPL-2.1+
+
+License: LGPL-2.1+
+ On Debian GNU/Linux system you can find the complete text of the
+ LGPL license in '/usr/share/common-licenses/LGPL-2.1'.
+
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..aeb12b3
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,4 @@
+#!/usr/bin/make -f
+
+debRreposname=bioc
+include /usr/share/R/debian/r-cran.mk
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..1e72412
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,3 @@
+version=3
+opts=downloadurlmangle=s/\.\./packages\/release\/data\/experiment/ \
+ http://bioconductor.org/packages/release/data/experiment/html/pasillaBamSubset.html .*/pasillaBamSubset_([\d\.]+).tar.gz

-- 
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