[med-svn] [r-cran-r.utils] 05/13: Update upstream source from tag 'upstream/2.5.0'
Andreas Tille
tille at debian.org
Thu Nov 9 13:18:17 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository r-cran-r.utils.
commit 4e29bffeb669e956f88e2e3604f70449e84b66c0
Merge: 8f248a3 d1d912b
Author: Andreas Tille <tille at debian.org>
Date: Thu Nov 9 14:04:55 2017 +0100
Update upstream source from tag 'upstream/2.5.0'
Update to upstream version '2.5.0'
with Debian dir b55a85ef9c0d7d0129d13966ca2ae39eabf126a3
DESCRIPTION | 20 +
MD5 | 539 ++++++++
NAMESPACE | 467 +++++++
NEWS | 1958 ++++++++++++++++++++++++++++++
R/000.R | 4 +
R/006.fixVarArgs.R | 63 +
R/999.NonDocumentedObjects.R | 228 ++++
R/999.package.R | 94 ++
R/Arguments.R | 1531 +++++++++++++++++++++++
R/Assert.R | 237 ++++
R/CmdArgsFunction.R | 34 +
R/FileListTree.R | 86 ++
R/FileProgressBar.R | 151 +++
R/GString-class.R | 825 +++++++++++++
R/GenericSummary.R | 60 +
R/Java.R | 562 +++++++++
R/LComments.R | 42 +
R/MultiVerbose.R | 130 ++
R/NullVerbose.R | 165 +++
R/Options.R | 627 ++++++++++
R/ProgressBar.R | 480 ++++++++
R/Settings.R | 451 +++++++
R/SmartComments.R | 373 ++++++
R/Sys.readlink2.R | 190 +++
R/System.R | 1089 +++++++++++++++++
R/TextStatusBar.R | 397 ++++++
R/TimeoutException.R | 84 ++
R/VComments.R | 318 +++++
R/Verbose.R | 1707 ++++++++++++++++++++++++++
R/addFinalizerToLast.R | 115 ++
R/arrayIndex.R | 75 ++
R/attachLocally.R | 110 ++
R/beta/Options.ui.Rtodo | 53 +
R/beta/singularPlural.Rtrial | 20 +
R/callHooks.R | 157 +++
R/capitalize.R | 121 ++
R/captureOutput.R | 118 ++
R/cmdArgs.R | 220 ++++
R/colClasses.R | 135 ++
R/commandArgs.R | 675 ++++++++++
R/compressFile.R | 402 ++++++
R/compressPDF.R | 143 +++
R/copyDirectory.R | 111 ++
R/copyFile.R | 205 ++++
R/countLines.R | 120 ++
R/createFileAtomically.R | 136 +++
R/createLink.R | 293 +++++
R/createWindowsShortcut.R | 178 +++
R/dataFrame.R | 57 +
R/density.EXTS.R | 170 +++
R/detachPackage.R | 70 ++
R/detachPlain.R | 35 +
R/devel/doCall.R | 172 +++
R/devel/fileSizeToHumanReadable.R | 109 ++
R/devel/splitUrl.R | 95 ++
R/dimNA.R | 94 ++
R/displayCode.R | 228 ++++
R/doCall.R | 101 ++
R/downloadFile.R | 281 +++++
R/eget.R | 138 +++
R/egsub.R | 98 ++
R/env.R | 53 +
R/extract.array.R | 125 ++
R/fileAccess.R | 283 +++++
R/filePath.R | 429 +++++++
R/finalizeSession.R | 42 +
R/findFiles.R | 258 ++++
R/findSourceTraceback.R | 1 +
R/gcDLLs.R | 108 ++
R/gcat.R | 80 ++
R/getAbsolutePath.R | 168 +++
R/getCommonPrefix.R | 49 +
R/getParent.R | 151 +++
R/getPathIfEmpty.R | 33 +
R/getRelativePath.R | 195 +++
R/gstring.R | 92 ++
R/hasUrlProtocol.R | 36 +
R/hpaste.R | 101 ++
R/hsize.R | 95 ++
R/inAnyInterval.R | 41 +
R/insert.R | 187 +++
R/installPackages.R | 149 +++
R/intToBin.R | 103 ++
R/intToHex.R | 22 +
R/intToOct.R | 22 +
R/intervalsToSeq.R | 75 ++
R/isAbsolutePath.R | 77 ++
R/isDirectory.R | 153 +++
R/isEof.connection.R | 49 +
R/isFile.R | 97 ++
R/isOpen.character.R | 99 ++
R/isPackageInstalled.R | 46 +
R/isPackageLoaded.R | 53 +
R/isReplicated.R | 62 +
R/isSingle.R | 47 +
R/isUrl.R | 39 +
R/isZero.R | 65 +
R/lastModified.R | 48 +
R/listDirectory.R | 122 ++
R/loadObject.R | 94 ++
R/loadToEnv.R | 46 +
R/mapToIntervals.R | 102 ++
R/mergeByCommonTails.R | 22 +
R/mergeIntervals.R | 120 ++
R/mkdirs.R | 175 +++
R/mout.R | 158 +++
R/moveInSearchPath.R | 150 +++
R/mpager.R | 69 ++
R/nullfile.R | 29 +
R/onGarbageCollect.R | 55 +
R/onSessionExit.R | 68 ++
R/parseArgs.R | 65 +
R/patchCode.R | 184 +++
R/popBackupFile.R | 149 +++
R/popTemporaryFile.R | 117 ++
R/printf.R | 55 +
R/pushBackupFile.R | 131 ++
R/pushTemporaryFile.R | 111 ++
R/queryRCmdCheck.R | 85 ++
R/readBinFragments.R | 217 ++++
R/readRdHelp.R | 122 ++
R/readTable.R | 403 ++++++
R/readTableIndex.R | 72 ++
R/readWindowsShellLink.R | 952 +++++++++++++++
R/readWindowsShortcut.R | 636 ++++++++++
R/reassignInPackage.R | 92 ++
R/removeDirectory.R | 102 ++
R/renameFile.R | 111 ++
R/resample.R | 51 +
R/resetWarnings.R | 45 +
R/saveObject.R | 120 ++
R/seqToHumanReadable.R | 94 ++
R/seqToIntervals.R | 94 ++
R/setOption.R | 47 +
R/shell.exec2.R | 84 ++
R/sourceDirectory.R | 219 ++++
R/sourceTo.R | 213 ++++
R/splitByCommonTails.R | 35 +
R/splitByPattern.R | 74 ++
R/stext.R | 130 ++
R/subplots.R | 93 ++
R/systemR.R | 86 ++
R/tempvar.R | 73 ++
R/tmpfile.R | 45 +
R/toAsciiRegExprPattern.R | 65 +
R/toCamelCase.R | 123 ++
R/toUrl.R | 115 ++
R/touchFile.R | 122 ++
R/unwrap.array.R | 186 +++
R/use.R | 523 ++++++++
R/useRepos.R | 290 +++++
R/whichVector.R | 95 ++
R/withCapture.R | 246 ++++
R/withLocale.R | 93 ++
R/withOptions.R | 87 ++
R/withRepos.R | 74 ++
R/withSeed.R | 72 ++
R/withSink.R | 167 +++
R/withTimeout.R | 151 +++
R/wrap.array.R | 165 +++
R/writeBinFragments.R | 169 +++
R/writeDataFrame.R | 202 +++
R/zzz.R | 89 ++
inst/data-ex/HISTORY.LNK | Bin 0 -> 1088 bytes
inst/data-ex/NEWS.LNK | Bin 0 -> 1160 bytes
inst/data-ex/exampleVComments.R | 49 +
inst/data-ex/lnkFileWith10BitsInFlag.lnk | Bin 0 -> 1236 bytes
man/Arguments.Rd | 73 ++
man/Assert.Rd | 59 +
man/FileProgressBar.Rd | 85 ++
man/GString-class.Rd | 184 +++
man/Java.Rd | 120 ++
man/LComments.Rd | 75 ++
man/MultiVerbose.Rd | 120 ++
man/Non-documented_objects.Rd | 233 ++++
man/NullVerbose.Rd | 88 ++
man/Options.Rd | 125 ++
man/ProgressBar.Rd | 95 ++
man/R.utils-package.Rd | 115 ++
man/Settings.Rd | 148 +++
man/SmartComments.Rd | 94 ++
man/Sys.readlink2.Rd | 42 +
man/System.Rd | 59 +
man/TextStatusBar.Rd | 136 +++
man/TimeoutException.Rd | 88 ++
man/VComments.Rd | 135 ++
man/Verbose.Rd | 216 ++++
man/addFinalizerToLast.Rd | 45 +
man/arrayIndex.Rd | 72 ++
man/as.character.GString.Rd | 38 +
man/as.character.Options.Rd | 41 +
man/as.character.ProgressBar.Rd | 38 +
man/as.character.Verbose.Rd | 41 +
man/as.character.binmode.Rd | 44 +
man/as.double.Verbose.Rd | 42 +
man/as.list.MultiVerbose.Rd | 38 +
man/as.list.Options.Rd | 39 +
man/as.logical.Verbose.Rd | 42 +
man/asByte.Java.Rd | 44 +
man/asInt.Java.Rd | 44 +
man/asLong.Java.Rd | 44 +
man/asShort.Java.Rd | 44 +
man/attachLocally.list.Rd | 77 ++
man/callHooks.Rd | 89 ++
man/callHooks.function.Rd | 44 +
man/capitalize.Rd | 59 +
man/capture.Verbose.Rd | 40 +
man/captureOutput.Rd | 91 ++
man/cat.Verbose.Rd | 49 +
man/check.Assert.Rd | 47 +
man/cleanup.FileProgressBar.Rd | 39 +
man/cmdArgs.Rd | 79 ++
man/cmdArgsCall.Rd | 50 +
man/colClasses.Rd | 75 ++
man/commandArgs.Rd | 168 +++
man/compile.SmartComments.Rd | 54 +
man/compressFile.Rd | 130 ++
man/compressPDF.Rd | 56 +
man/convertComment.SmartComments.Rd | 41 +
man/convertComment.VComments.Rd | 44 +
man/copyDirectory.Rd | 46 +
man/copyFile.Rd | 77 ++
man/countLines.Rd | 54 +
man/createFileAtomically.Rd | 116 ++
man/createLink.Rd | 76 ++
man/createWindowsShortcut.Rd | 101 ++
man/currentTimeMillis.System.Rd | 41 +
man/dataFrame.Rd | 50 +
man/detachPackage.Rd | 40 +
man/dimNALT_-.Rd | 54 +
man/displayCode.Rd | 67 +
man/doCall.Rd | 52 +
man/downloadFile.character.Rd | 71 ++
man/draw.density.Rd | 50 +
man/eget.Rd | 86 ++
man/egsub.Rd | 86 ++
man/enter.Verbose.Rd | 56 +
man/env.Rd | 70 ++
man/equals.Options.Rd | 40 +
man/equals.Verbose.Rd | 40 +
man/evaluate.GString.Rd | 39 +
man/evaluate.Verbose.Rd | 41 +
man/exit.Verbose.Rd | 48 +
man/extract.array.Rd | 93 ++
man/file.info2.Rd | 46 +
man/fileAccess.Rd | 129 ++
man/filePath.Rd | 103 ++
man/finalizeSession.Rd | 42 +
man/findFiles.Rd | 65 +
man/findGhostscript.System.Rd | 65 +
man/findGraphicsDevice.System.Rd | 86 ++
man/findSettings.Settings.Rd | 50 +
man/findSourceTraceback.Rd | 75 ++
man/flush.TextStatusBar.Rd | 47 +
man/gcDLLs.Rd | 56 +
man/gcat.Rd | 43 +
man/getAbsolutePath.Rd | 51 +
man/getBarString.ProgressBar.Rd | 38 +
man/getBuiltinDate.GString.Rd | 44 +
man/getBuiltinDatetime.GString.Rd | 44 +
man/getBuiltinHostname.GString.Rd | 43 +
man/getBuiltinOs.GString.Rd | 43 +
man/getBuiltinPid.GString.Rd | 43 +
man/getBuiltinRhome.GString.Rd | 43 +
man/getBuiltinRversion.GString.Rd | 43 +
man/getBuiltinTime.GString.Rd | 44 +
man/getBuiltinUsername.GString.Rd | 43 +
man/getCharacters.Arguments.Rd | 67 +
man/getDoubles.Arguments.Rd | 51 +
man/getEnvironment.Arguments.Rd | 49 +
man/getFilename.Arguments.Rd | 74 ++
man/getHostname.System.Rd | 44 +
man/getIndices.Arguments.Rd | 54 +
man/getInstanceOf.Arguments.Rd | 54 +
man/getIntegers.Arguments.Rd | 51 +
man/getLabel.TextStatusBar.Rd | 43 +
man/getLeaves.Options.Rd | 39 +
man/getLoadedPathname.Settings.Rd | 42 +
man/getLogicals.Arguments.Rd | 54 +
man/getMessage.TimeoutException.Rd | 42 +
man/getNumerics.Arguments.Rd | 57 +
man/getOption.Options.Rd | 49 +
man/getParent.Rd | 44 +
man/getRaw.GString.Rd | 39 +
man/getReadablePathname.Arguments.Rd | 71 ++
man/getReadablePathnames.Arguments.Rd | 50 +
man/getRegularExpression.Arguments.Rd | 49 +
man/getRelativePath.Rd | 71 ++
man/getThreshold.Verbose.Rd | 42 +
man/getTimestampFormat.Verbose.Rd | 43 +
man/getUsername.System.Rd | 44 +
man/getVariableValue.GString.Rd | 54 +
man/getVector.Arguments.Rd | 52 +
man/getVerbose.Arguments.Rd | 56 +
man/getWritablePathname.Arguments.Rd | 67 +
man/gstring.Rd | 41 +
man/hasOption.Options.Rd | 43 +
man/hasUrlProtocol.Rd | 37 +
man/header.Verbose.Rd | 49 +
man/hpaste.Rd | 127 ++
man/hsize.Rd | 57 +
man/inAnyInterval.numeric.Rd | 41 +
man/increase.ProgressBar.Rd | 40 +
man/inherits.Assert.Rd | 45 +
man/insert.Rd | 103 ++
man/installPackages.Rd | 54 +
man/intToBin.Rd | 42 +
man/intervalsToSeq.matrix.Rd | 40 +
man/isAbsolutePath.Rd | 39 +
man/isDirectory.Rd | 49 +
man/isDone.ProgressBar.Rd | 38 +
man/isEof.connection.Rd | 37 +
man/isFile.Rd | 49 +
man/isMatrix.Assert.Rd | 46 +
man/isModified.Settings.Rd | 42 +
man/isOn.NullVerbose.Rd | 41 +
man/isOn.Verbose.Rd | 42 +
man/isOpen.character.Rd | 51 +
man/isPackageInstalled.Rd | 41 +
man/isPackageLoaded.Rd | 45 +
man/isReplicated.Rd | 100 ++
man/isScalar.Assert.Rd | 44 +
man/isSingle.Rd | 40 +
man/isUrl.Rd | 37 +
man/isVector.Assert.Rd | 45 +
man/isVisible.NullVerbose.Rd | 41 +
man/isVisible.Verbose.Rd | 44 +
man/isZero.Rd | 79 ++
man/lastModified.Rd | 47 +
man/less.Verbose.Rd | 43 +
man/listDirectory.Rd | 60 +
man/loadAnywhere.Settings.Rd | 48 +
man/loadObject.Rd | 53 +
man/loadToEnv.Rd | 42 +
man/mapToIntervals.numeric.Rd | 55 +
man/mergeIntervals.numeric.Rd | 64 +
man/mkdirs.Rd | 59 +
man/more.Verbose.Rd | 43 +
man/mout.Rd | 68 ++
man/moveInSearchPath.Rd | 57 +
man/mpager.Rd | 46 +
man/names.Options.Rd | 39 +
man/nbrOfOptions.Options.Rd | 39 +
man/newline.TextStatusBar.Rd | 41 +
man/newline.Verbose.Rd | 43 +
man/nullfile.Rd | 33 +
man/off.Verbose.Rd | 42 +
man/on.Verbose.Rd | 42 +
man/onGarbageCollect.Rd | 45 +
man/onSessionExit.Rd | 60 +
man/openBrowser.System.Rd | 85 ++
man/parse.GString.Rd | 38 +
man/parse.SmartComments.Rd | 49 +
man/parseDebian.System.Rd | 57 +
man/patchCode.Rd | 87 ++
man/popBackupFile.Rd | 55 +
man/popMessage.TextStatusBar.Rd | 42 +
man/popTemporaryFile.Rd | 58 +
man/print.GString.Rd | 38 +
man/print.Verbose.Rd | 43 +
man/printf.Rd | 56 +
man/printf.Verbose.Rd | 44 +
man/promptAndSave.Settings.Rd | 54 +
man/pushBackupFile.Rd | 94 ++
man/pushState.Verbose.Rd | 48 +
man/pushTemporaryFile.Rd | 104 ++
man/queryRCmdCheck.Rd | 59 +
man/readBinFragments.Rd | 153 +++
man/readByte.Java.Rd | 52 +
man/readInt.Java.Rd | 50 +
man/readRdHelp.Rd | 37 +
man/readShort.Java.Rd | 48 +
man/readTable.Rd | 101 ++
man/readTableIndex.Rd | 57 +
man/readUTF.Java.Rd | 55 +
man/readWindowsShellLink.Rd | 70 ++
man/readWindowsShortcut.Rd | 81 ++
man/reassignInPackage.Rd | 43 +
man/removeDirectory.Rd | 53 +
man/renameFile.Rd | 49 +
man/resample.Rd | 51 +
man/reset.ProgressBar.Rd | 40 +
man/reset.SmartComments.Rd | 41 +
man/reset.VComments.Rd | 41 +
man/resetWarnings.Rd | 43 +
man/ruler.Verbose.Rd | 46 +
man/saveAnywhere.Settings.Rd | 50 +
man/saveObject.Rd | 52 +
man/seqToHumanReadable.Rd | 47 +
man/seqToIntervals.Rd | 55 +
man/setDefaultLevel.Verbose.Rd | 42 +
man/setLabel.TextStatusBar.Rd | 45 +
man/setLabels.TextStatusBar.Rd | 43 +
man/setMaxValue.ProgressBar.Rd | 39 +
man/setOption.Options.Rd | 46 +
man/setOption.Rd | 40 +
man/setProgress.ProgressBar.Rd | 43 +
man/setStepLength.ProgressBar.Rd | 39 +
man/setThreshold.Verbose.Rd | 43 +
man/setTicks.ProgressBar.Rd | 39 +
man/setTimestampFormat.Verbose.Rd | 46 +
man/setValue.ProgressBar.Rd | 43 +
man/shell.exec2.Rd | 67 +
man/sourceDirectory.Rd | 63 +
man/sourceTo.Rd | 130 ++
man/splitByPattern.Rd | 51 +
man/stext.Rd | 46 +
man/str.Options.Rd | 42 +
man/str.Verbose.Rd | 43 +
man/subplots.Rd | 60 +
man/summary.Verbose.Rd | 43 +
man/swapXY.density.Rd | 41 +
man/systemR.Rd | 59 +
man/tempvar.Rd | 61 +
man/timestamp.Verbose.Rd | 42 +
man/timestampOn.Verbose.Rd | 47 +
man/tmpfile.Rd | 49 +
man/toCamelCase.Rd | 64 +
man/toUrl.Rd | 42 +
man/touchFile.Rd | 77 ++
man/unwrap.array.Rd | 61 +
man/update.FileProgressBar.Rd | 40 +
man/update.ProgressBar.Rd | 39 +
man/update.TextStatusBar.Rd | 41 +
man/updateLabels.TextStatusBar.Rd | 42 +
man/use.Rd | 70 ++
man/useRepos.Rd | 52 +
man/validate.SmartComments.Rd | 42 +
man/validate.VComments.Rd | 42 +
man/warnings.Verbose.Rd | 47 +
man/whichVector.logical.Rd | 123 ++
man/withCapture.Rd | 107 ++
man/withLocale.Rd | 61 +
man/withOptions.Rd | 76 ++
man/withRepos.Rd | 64 +
man/withSeed.Rd | 70 ++
man/withSink.Rd | 71 ++
man/withTimeout.Rd | 137 +++
man/wrap.array.Rd | 162 +++
man/writeBinFragments.Rd | 48 +
man/writeByte.Java.Rd | 48 +
man/writeDataFrame.data.frame.Rd | 59 +
man/writeInt.Java.Rd | 44 +
man/writeRaw.MultiVerbose.Rd | 42 +
man/writeRaw.NullVerbose.Rd | 86 ++
man/writeRaw.Verbose.Rd | 44 +
man/writeShort.Java.Rd | 44 +
man/writeUTF.Java.Rd | 42 +
tests/Arguments-FILES.R | 20 +
tests/FileProgressBar.R | 14 +
tests/GString.R | 114 ++
tests/Java.R | 60 +
tests/MultiVerbose.R | 46 +
tests/NullVerbose.R | 7 +
tests/Options.R | 45 +
tests/ProgressBar.R | 33 +
tests/Settings.R | 33 +
tests/System.R | 6 +
tests/TextStatusBar.R | 56 +
tests/VComments.R | 16 +
tests/Verbose.R | 65 +
tests/absolute-relative-paths.R | 58 +
tests/arrayIndex.R | 15 +
tests/attachLocally.R | 28 +
tests/callHooks.R | 56 +
tests/capitalize.R | 34 +
tests/captureOutput.R | 36 +
tests/cmdArgs.R | 58 +
tests/colClasses.R | 34 +
tests/commandArgs.R | 87 ++
tests/compressFile.R | 57 +
tests/compressPDF.R | 28 +
tests/copyRenameFile.R | 56 +
tests/countLines.R | 106 ++
tests/cout.R | 86 ++
tests/createFileAtomically.R | 52 +
tests/createLink.R | 26 +
tests/dataFrame.R | 6 +
tests/dimNA.R | 15 +
tests/displayCode.R | 37 +
tests/doCall.R | 22 +
tests/eget.R | 22 +
tests/egsub.R | 39 +
tests/env.R | 22 +
tests/extract.array.R | 49 +
tests/fileAccess.R | 63 +
tests/filePath.R | 44 +
tests/findFiles.R | 42 +
tests/findSourceTraceback.R | 29 +
tests/gcDLLs.R | 14 +
tests/gcat.R | 33 +
tests/getOption.R | 27 +
tests/getParent.R | 6 +
tests/hpaste.R | 68 ++
tests/insert.R | 66 +
tests/intToHex.R | 11 +
tests/isPackageLoaded.R | 8 +
tests/isReplicated.R | 48 +
tests/isUrl.R | 20 +
tests/isZero.R | 29 +
tests/listDirectory.R | 18 +
tests/loadObject.R | 41 +
tests/loadToEnv.R | 12 +
tests/mkdirs.R | 83 ++
tests/mout.R | 87 ++
tests/mpager.R | 6 +
tests/nullfile.R | 2 +
tests/parseRepos.R | 46 +
tests/pushBackupFile.R | 34 +
tests/pushTemporaryFile.R | 38 +
tests/queryRCmdCheck.R | 18 +
tests/readBinFragments.R | 110 ++
tests/readWindowsShellLink.R | 10 +
tests/readWindowsShortcut.R | 14 +
tests/resample.R | 11 +
tests/seqToHumanReadable.R | 47 +
tests/seqToIntervals.R | 30 +
tests/sourceTo.R | 58 +
tests/splitByPattern.R | 7 +
tests/subplots.R | 30 +
tests/symlinks,dirs.R | 90 ++
tests/symlinks,files.R | 139 +++
tests/systemR.R | 9 +
tests/tempvar.R | 14 +
tests/tmpfile.R | 22 +
tests/toCamelCase.R | 56 +
tests/touchFile.R | 45 +
tests/use.R | 28 +
tests/useRepos.R | 14 +
tests/whichVector.R | 25 +
tests/withCapture.R | 115 ++
tests/withLocale.R | 59 +
tests/withOptions.R | 70 ++
tests/withRepos.R | 102 ++
tests/withSeed.R | 48 +
tests/withSink.R | 80 ++
tests/withTimeout.R | 122 ++
tests/wrap.array.R | 146 +++
tests/writeDataFrame.R | 32 +
tests/zzz_finalizer_crash.R | 31 +
540 files changed, 51894 insertions(+)
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