[med-svn] [htslib] 04/08: Update symbols file for 1.4.1
Diane Trout
diane at moszumanska.debian.org
Thu Nov 9 22:37:13 UTC 2017
This is an automated email from the git hooks/post-receive script.
diane pushed a commit to branch debian/unstable
in repository htslib.
commit eaa8b369b6f21ec03d791d1639698ec7b8c0259c
Author: Diane Trout <diane at ghic.org>
Date: Thu Nov 9 13:37:25 2017 -0800
Update symbols file for 1.4.1
A number of symbols were added, the symbols that were removed were not
in the "public api"
---
debian/libhts2.symbols | 118 +++++++++++++++++++++++++++++++++++++++++--------
1 file changed, 100 insertions(+), 18 deletions(-)
diff --git a/debian/libhts2.symbols b/debian/libhts2.symbols
index a16fa1c..500d69b 100644
--- a/debian/libhts2.symbols
+++ b/debian/libhts2.symbols
@@ -5,9 +5,13 @@ libhts.so.2 libhts2 #MINVER#
bam_aux2Z at Base 1.0
bam_aux2f at Base 1.0
bam_aux2i at Base 1.0
+ bam_auxB2f at Base 1.4.1
+ bam_auxB2i at Base 1.4.1
+ bam_auxB_len at Base 1.4.1
bam_aux_append at Base 1.0
bam_aux_del at Base 1.0
bam_aux_get at Base 1.0
+ bam_aux_update_str at Base 1.4.1
bam_cigar2qlen at Base 1.0
bam_cigar2rlen at Base 1.0
bam_construct_seq at Base 1.0
@@ -25,13 +29,18 @@ libhts.so.2 libhts2 #MINVER#
bam_index_build at Base 1.0
bam_init1 at Base 1.0
bam_mplp_auto at Base 1.0
+ bam_mplp_constructor at Base 1.4.1
bam_mplp_destroy at Base 1.0
+ bam_mplp_destructor at Base 1.4.1
bam_mplp_init at Base 1.0
bam_mplp_init_overlaps at Base 1.0
+ bam_mplp_reset at Base 1.4.1
bam_mplp_set_maxcnt at Base 1.0
bam_name2id at Base 1.0
bam_plp_auto at Base 1.0
+ bam_plp_constructor at Base 1.4.1
bam_plp_destroy at Base 1.0
+ bam_plp_destructor at Base 1.4.1
bam_plp_init at Base 1.0
bam_plp_init_overlaps at Base 1.0
bam_plp_next at Base 1.0
@@ -75,6 +84,7 @@ libhts.so.2 libhts2 #MINVER#
bcf_hdr_destroy at Base 1.0
bcf_hdr_dup at Base 1.0
bcf_hdr_fmt_text at Base 1.0
+ bcf_hdr_format at Base 1.4.1
bcf_hdr_get_hrec at Base 1.0
bcf_hdr_get_version at Base 1.0
bcf_hdr_id2int at Base 1.0
@@ -104,6 +114,7 @@ libhts.so.2 libhts2 #MINVER#
bcf_hrec_set_val at Base 1.0
bcf_index at Base 1.0
bcf_index_build2 at Base 1.3
+ bcf_index_build3 at Base 1.4.1
bcf_index_build at Base 1.0
bcf_index_load2 at Base 1.3
bcf_init at Base 1.0
@@ -115,6 +126,7 @@ libhts.so.2 libhts2 #MINVER#
bcf_remove_filter at Base 1.0
bcf_sr_add_reader at Base 1.0
bcf_sr_destroy at Base 1.0
+ bcf_sr_destroy_threads at Base 1.4.1
bcf_sr_init at Base 1.0
bcf_sr_next_line at Base 1.0
bcf_sr_regions_destroy at Base 1.0
@@ -125,9 +137,15 @@ libhts.so.2 libhts2 #MINVER#
bcf_sr_regions_seek at Base 1.0
bcf_sr_remove_reader at Base 1.0
bcf_sr_seek at Base 1.0
+ bcf_sr_set_opt at Base 1.4.1
bcf_sr_set_regions at Base 1.0
bcf_sr_set_samples at Base 1.0
bcf_sr_set_targets at Base 1.0
+ bcf_sr_set_threads at Base 1.4.1
+ bcf_sr_sort_destroy at Base 1.4.1
+ bcf_sr_sort_init at Base 1.4.1
+ bcf_sr_sort_next at Base 1.4.1
+ bcf_sr_sort_remove_reader at Base 1.4.1
bcf_sr_strerror at Base 1.2.1
bcf_subset at Base 1.0
bcf_subset_format at Base 1.0
@@ -148,10 +166,14 @@ libhts.so.2 libhts2 #MINVER#
bcf_update_id at Base 1.0
bcf_update_info at Base 1.0
bcf_write at Base 1.0
+ bgzf_block_write at Base 1.4.1
bgzf_check_EOF at Base 1.0
bgzf_close at Base 1.0
bgzf_compress at Base 1.3
+ bgzf_compression at Base 1.4.1
+ bgzf_decode_func at Base 1.4.1
bgzf_dopen at Base 1.0
+ bgzf_encode_func at Base 1.4.1
bgzf_flush at Base 1.0
bgzf_flush_try at Base 1.0
bgzf_getc at Base 1.0
@@ -161,9 +183,13 @@ libhts.so.2 libhts2 #MINVER#
bgzf_index_build_init at Base 1.0
bgzf_index_destroy at Base 1.0
bgzf_index_dump at Base 1.0
+ bgzf_index_dump_hfile at Base 1.4.1
bgzf_index_load at Base 1.0
+ bgzf_index_load_hfile at Base 1.4.1
bgzf_is_bgzf at Base 1.0
bgzf_mt at Base 1.0
+ bgzf_mt_read_block at Base 1.4.1
+ bgzf_nul_func at Base 1.4.1
bgzf_open at Base 1.0
bgzf_raw_read at Base 1.0
bgzf_raw_write at Base 1.0
@@ -171,6 +197,7 @@ libhts.so.2 libhts2 #MINVER#
bgzf_read_block at Base 1.0
bgzf_seek at Base 1.0
bgzf_set_cache_size at Base 1.0
+ bgzf_thread_pool at Base 1.4.1
bgzf_useek at Base 1.0
bgzf_utell at Base 1.0
bgzf_write at Base 1.0
@@ -218,6 +245,7 @@ libhts.so.2 libhts2 #MINVER#
cram_byte_array_stop_encode_free at Base 1.0
cram_byte_array_stop_encode_init at Base 1.0
cram_byte_array_stop_encode_store at Base 1.0
+ cram_check_EOF at Base 1.4.1
cram_close at Base 1.0
cram_codec_decoder2encoder at Base 1.3
cram_codec_to_id at Base 1.2.1
@@ -278,6 +306,7 @@ libhts.so.2 libhts2 #MINVER#
cram_gamma_decode_init at Base 1.0
cram_get_bam_seq at Base 1.0
cram_get_ref at Base 1.0
+ cram_get_refs at Base 1.4.1
cram_get_seq at Base 1.0
cram_header_to_bam at Base 1.0
cram_huffman_decode_char0 at Base 1.0
@@ -306,6 +335,7 @@ libhts.so.2 libhts2 #MINVER#
cram_new_container at Base 1.0
cram_new_metrics at Base 1.0
cram_new_slice at Base 1.0
+ cram_nop_decode_reset at Base 1.4.1
cram_open at Base 1.0
cram_put_bam_seq at Base 1.0
cram_read_SAM_hdr at Base 1.0
@@ -332,21 +362,29 @@ libhts.so.2 libhts2 #MINVER#
cram_subexp_decode at Base 1.0
cram_subexp_decode_free at Base 1.0
cram_subexp_decode_init at Base 1.0
+ cram_to_bam at Base 1.4.1
cram_transcode_rg at Base 1.3
cram_uncompress_block at Base 1.0
+ cram_update_curr_slice at Base 1.4.1
cram_write_SAM_hdr at Base 1.0
cram_write_block at Base 1.0
cram_write_container at Base 1.0
cram_write_file_def at Base 1.0
debug_buffer at Base 1.0
debug_buffers at Base 1.0
+ debug_vbuf at Base 1.4.1
+ debug_vsets at Base 1.4.1
+ errmod_cal at Base 1.4.1
+ errmod_destroy at Base 1.4.1
+ errmod_init at Base 1.4.1
expand_cache_path at Base 1.0
+ fai_build3 at Base 1.4.1
fai_build at Base 1.0
fai_build_core at Base 1.0
fai_destroy at Base 1.0
fai_fetch at Base 1.0
+ fai_load3 at Base 1.4.1
fai_load at Base 1.0
- fai_save at Base 1.0
faidx_fetch_nseq at Base 1.2.1
faidx_fetch_seq at Base 1.0
faidx_has_seq at Base 1.0
@@ -358,6 +396,7 @@ libhts.so.2 libhts2 #MINVER#
find_file_url at Base 1.0
find_path at Base 1.3
flen at Base 1.0
+ grp_create_key at Base 1.4.1
hclose at Base 1.0
hclose_abruptly at Base 1.0
hdopen at Base 1.0
@@ -366,14 +405,19 @@ libhts.so.2 libhts2 #MINVER#
hfile_always_remote at Base 1.3
hfile_destroy at Base 1.0
hfile_init at Base 1.0
+ hfile_init_fixed at Base 1.4.1
hfile_oflags at Base 1.0
+ hfile_plugin_init_gcs at Base 1.4.1
hfile_plugin_init_libcurl at Base 1.3.1
hfile_plugin_init_net at Base 1.3
+ hfile_plugin_init_s3 at Base 1.4.1
hflush at Base 1.0
hgetc2 at Base 1.0
+ hgetdelim at Base 1.4.1
+ hgets at Base 1.4.1
hisremote at Base 1.2.1
hopen at Base 1.0
- hopen_libcurl at Base 1.3.1
+ hopen_json_redirect at Base 1.4.1
hopen_net at Base 1.0
hpeek at Base 1.0
hputc2 at Base 1.0
@@ -381,7 +425,11 @@ libhts.so.2 libhts2 #MINVER#
hread2 at Base 1.0
hrec_add_idx at Base 1.0
hseek at Base 1.0
+ hts_base64_decoded_length at Base 1.4.1
+ hts_check_EOF at Base 1.4.1
hts_close at Base 1.0
+ hts_decode_base64 at Base 1.4.1
+ hts_decode_percent at Base 1.4.1
hts_detect_format at Base 1.2.1
hts_file_type at Base 1.0
hts_format_description at Base 1.2.1
@@ -408,6 +456,10 @@ libhts.so.2 libhts2 #MINVER#
hts_itr_next at Base 1.0
hts_itr_query at Base 1.0
hts_itr_querys at Base 1.0
+ hts_json_fnext at Base 1.4.1
+ hts_json_fskip_value at Base 1.4.1
+ hts_json_snext at Base 1.4.1
+ hts_json_sskip_value at Base 1.4.1
hts_md5_destroy at Base 1.3
hts_md5_final at Base 1.3
hts_md5_hex at Base 1.3
@@ -425,9 +477,36 @@ libhts.so.2 libhts2 #MINVER#
hts_parse_reg at Base 1.0
hts_readlines at Base 1.0
hts_readlist at Base 1.0
+ hts_realloc_or_die at Base 1.4.1
+ hts_set_cache_size at Base 1.4.1
hts_set_fai_filename at Base 1.0
hts_set_opt at Base 1.2.1
+ hts_set_thread_pool at Base 1.4.1
hts_set_threads at Base 1.0
+ hts_tpool_delete_result at Base 1.4.1
+ hts_tpool_destroy at Base 1.4.1
+ hts_tpool_dispatch2 at Base 1.4.1
+ hts_tpool_dispatch at Base 1.4.1
+ hts_tpool_init at Base 1.4.1
+ hts_tpool_kill at Base 1.4.1
+ hts_tpool_next_result at Base 1.4.1
+ hts_tpool_next_result_wait at Base 1.4.1
+ hts_tpool_process_attach at Base 1.4.1
+ hts_tpool_process_destroy at Base 1.4.1
+ hts_tpool_process_detach at Base 1.4.1
+ hts_tpool_process_empty at Base 1.4.1
+ hts_tpool_process_flush at Base 1.4.1
+ hts_tpool_process_init at Base 1.4.1
+ hts_tpool_process_len at Base 1.4.1
+ hts_tpool_process_qsize at Base 1.4.1
+ hts_tpool_process_ref_decr at Base 1.4.1
+ hts_tpool_process_ref_incr at Base 1.4.1
+ hts_tpool_process_reset at Base 1.4.1
+ hts_tpool_process_shutdown at Base 1.4.1
+ hts_tpool_process_sz at Base 1.4.1
+ hts_tpool_result_data at Base 1.4.1
+ hts_tpool_size at Base 1.4.1
+ hts_tpool_wake_dispatch at Base 1.4.1
hts_useek at Base 1.0
hts_utell at Base 1.0
hts_verbose at Base 1.0
@@ -469,17 +548,26 @@ libhts.so.2 libhts2 #MINVER#
knet_open at Base 1.0
knet_read at Base 1.0
knet_seek at Base 1.0
+ kputd at Base 1.4.1
ks_combsort__off at Base 1.0
ks_destroy at Base 1.0
ks_getuntil2 at Base 1.0
+ ks_combsort_uint16_t at Base 1.4.1
ks_heapadjust__off at Base 1.0
+ ks_heapadjust_uint16_t at Base 1.4.1
ks_heapmake__off at Base 1.0
+ ks_heapmake_uint16_t at Base 1.4.1
ks_heapsort__off at Base 1.0
ks_init at Base 1.0
+ ks_heapsort_uint16_t at Base 1.4.1
ks_introsort__off at Base 1.0
+ ks_introsort_uint16_t at Base 1.4.1
ks_ksmall__off at Base 1.0
+ ks_ksmall_uint16_t at Base 1.4.1
ks_mergesort__off at Base 1.0
+ ks_mergesort_uint16_t at Base 1.4.1
ks_shuffle__off at Base 1.0
+ ks_shuffle_uint16_t at Base 1.4.1
ksplit_core at Base 1.0
ksprintf at Base 1.0
kstrnstr at Base 1.0
@@ -487,10 +575,10 @@ libhts.so.2 libhts2 #MINVER#
kstrtok at Base 1.0
kt_fisher_exact at Base 1.0
kvsprintf at Base 1.0
+ ltf8_bytes at Base 1.4.1
ltf8_decode at Base 1.0
ltf8_decode_crc at Base 1.3
- ltf8_get at Base 1.0
- ltf8_put at Base 1.0
+ merge_vsets at Base 1.4.1
mfascii at Base 1.0
mfclose at Base 1.0
mfcreate at Base 1.0
@@ -519,11 +607,13 @@ libhts.so.2 libhts2 #MINVER#
mstdout at Base 1.0
mungetc at Base 1.0
open_path_mfile at Base 1.0
- paranoid_fclose at Base 1.0
+ pairing_score at Base 1.4.1
pool_alloc at Base 1.0
pool_create at Base 1.0
pool_destroy at Base 1.0
pool_free at Base 1.0
+ probaln_glocal at Base 1.4.1
+ push_vset at Base 1.4.1
rans_compress at Base 1.2.1
rans_compress_O0 at Base 1.2.1
rans_compress_O1 at Base 1.2.1
@@ -541,6 +631,8 @@ libhts.so.2 libhts2 #MINVER#
regidx_parse_tab at Base 1.2.1
regidx_seq_names at Base 1.2.1
regidx_seq_nregs at Base 1.2.1
+ remove_vset at Base 1.4.1
+ sam_cap_mapq at Base 1.4.1
sam_format1 at Base 1.0
sam_hdr_PG_ID at Base 1.0
sam_hdr_add at Base 1.0
@@ -569,6 +661,7 @@ libhts.so.2 libhts2 #MINVER#
sam_hdr_vadd at Base 1.0
sam_hdr_write at Base 1.0
sam_index_build2 at Base 1.3
+ sam_index_build3 at Base 1.4.1
sam_index_build at Base 1.3
sam_index_load2 at Base 1.3
sam_index_load at Base 1.0
@@ -577,6 +670,7 @@ libhts.so.2 libhts2 #MINVER#
sam_open_mode at Base 1.0
sam_open_mode_opts at Base 1.3
sam_parse1 at Base 1.0
+ sam_prob_realn at Base 1.4.1
sam_read1 at Base 1.0
sam_write1 at Base 1.0
seq_nt16_int at Base 1.2.1
@@ -588,19 +682,6 @@ libhts.so.2 libhts2 #MINVER#
string_pool_create at Base 1.0
string_pool_destroy at Base 1.0
stringify_argv at Base 1.0
- t_pool_delete_result at Base 1.0
- t_pool_destroy at Base 1.0
- t_pool_dispatch2 at Base 1.0
- t_pool_dispatch at Base 1.0
- t_pool_flush at Base 1.0
- t_pool_init at Base 1.0
- t_pool_next_result at Base 1.0
- t_pool_next_result_wait at Base 1.0
- t_pool_results_queue_empty at Base 1.0
- t_pool_results_queue_len at Base 1.0
- t_pool_results_queue_sz at Base 1.0
- t_results_queue_destroy at Base 1.0
- t_results_queue_init at Base 1.0
tbx_conf_bed at Base 1.0
tbx_conf_gff at Base 1.0
tbx_conf_psltbl at Base 1.0
@@ -609,6 +690,7 @@ libhts.so.2 libhts2 #MINVER#
tbx_destroy at Base 1.0
tbx_index at Base 1.0
tbx_index_build2 at Base 1.3
+ tbx_index_build3 at Base 1.4.1
tbx_index_build at Base 1.0
tbx_index_load2 at Base 1.3
tbx_index_load at Base 1.0
--
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