[med-svn] [sniffles] branch master updated (46ed72f -> 33c8ab0)

[Afif Elghraoui]

This is an automated email from the git hooks/post-receive script.

afif pushed a change to branch master
in repository sniffles.

      from  46ed72f   Install upstream README
       new  9e17385   d/watch: remove unnecessary script invocations
       new  4cfc4c8   New upstream version 1.0.6+ds
       new  ad2fd93   Merge tag 'upstream/1.0.6+ds'
       new  5fc5368   Add d/upstream/metadata with preprint reference
       new  f1489b3   Bump Standards-Version to 4.1.1
       new  ed10a4f   Add support for the nodoc build profile
       new  33c8ab0   releasing package sniffles version 1.0.6+ds-1

The 7 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 CMakeLists.txt                 |   8 +-
 README.md                      |   5 +
 debian/changelog               |  11 ++
 debian/control                 |   4 +-
 debian/rules                   |  10 +-
 debian/upstream/metadata       |   8 ++
 debian/watch                   |   2 +-
 src/Alignment.cpp              | 233 ++++++++++++++++++++++++-------------
 src/Alignment.h                |  11 +-
 src/Genotyper/Genotyper.cpp    |  55 ++++++---
 src/Paramer.h                  |   8 +-
 src/Sniffles.cpp               |  91 +++++++++------
 src/Version.h                  |   2 +-
 src/cluster/Cluster_SVs.cpp    |  31 +++--
 src/cluster/Cluster_SVs.h      |   2 +
 src/print/BedpePrinter.cpp     |  99 +++++++++-------
 src/print/IPrinter.cpp         | 110 ++++++++++++------
 src/print/IPrinter.h           |  43 ++++---
 src/print/VCFPrinter.cpp       | 253 ++++++++++++++++++++++++++---------------
 src/sub/Breakpoint.cpp         | 112 +++++++-----------
 src/sub/Breakpoint.h           |   1 +
 src/sub/Detect_Breakpoints.cpp | 226 ++++++++++++++++++++----------------
 22 files changed, 818 insertions(+), 507 deletions(-)
 create mode 100644 debian/upstream/metadata

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