[med-svn] [sniffles] branch upstream updated (b4da08b -> 4cfc4c8)

[Afif Elghraoui]

This is an automated email from the git hooks/post-receive script.

afif pushed a change to branch upstream
in repository sniffles.

      from  b4da08b   New upstream version 1.0.2+ds
       new  4cfc4c8   New upstream version 1.0.6+ds

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 CMakeLists.txt                 |   8 +-
 README.md                      |   5 +
 src/Alignment.cpp              | 233 ++++++++++++++++++++++++-------------
 src/Alignment.h                |  11 +-
 src/Genotyper/Genotyper.cpp    |  55 ++++++---
 src/Paramer.h                  |   8 +-
 src/Sniffles.cpp               |  91 +++++++++------
 src/Version.h                  |   2 +-
 src/cluster/Cluster_SVs.cpp    |  31 +++--
 src/cluster/Cluster_SVs.h      |   2 +
 src/print/BedpePrinter.cpp     |  99 +++++++++-------
 src/print/IPrinter.cpp         | 110 ++++++++++++------
 src/print/IPrinter.h           |  43 ++++---
 src/print/VCFPrinter.cpp       | 253 ++++++++++++++++++++++++++---------------
 src/sub/Breakpoint.cpp         | 112 +++++++-----------
 src/sub/Breakpoint.h           |   1 +
 src/sub/Detect_Breakpoints.cpp | 226 ++++++++++++++++++++----------------
 17 files changed, 790 insertions(+), 500 deletions(-)

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/sniffles.git